| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91790210
Identifier: 91790210
GI number: 91790210
Start: 4617399
End: 4617776
Strand: Reverse
Name: 91790210
Synonym: Bpro_4375
Alternate gene names: NA
Gene position: 4617776-4617399 (Counterclockwise)
Preceding gene: 91790211
Following gene: 91790209
Centisome position: 88.8
GC content: 67.2
Gene sequence:
>378_bases ATGCCCACTGATTCCTTCTTCCAACCGCTGGCCCAGGCCGGCGCCTCCACGGCGGCGACCATCGCCGTAACCCTCAACGG CCAGCCGCTGCAGGTGCCCGTGGGCTCCAGCGTGGCGGCCGCCCTGCTAGCTGCCGGCGTTAATCGCTTTCGTAATTCGC CGGTGTCGGGCGAGGGCCGCGCACCTTACTGCATGATGGGCGTGTGCTTTGAATGCCTGCTGGAAATCAACGGCGTGCCC AACCGCCAGGGCTGCCTGGTGCCGCTGGAGGCCGGCATGGCCATCCGTACCCAGGACGGTATGCGCGACCTGCTTGCCGA AGCCAAAGACCCGGCCATGGCTCTCGCCCAGGCGATGGAGGCACCCCATGGCGTTTGA
Upstream 100 bases:
>100_bases GCATTCCGCGTCGCACCCTGGGTCGGCGGTGCGCCGCGGCCCGAAGAGATCGGCGTCTTCCAGGGCGACCGTTTTTTGAA CCCCAACTACCGCCCCAGCC
Downstream 100 bases:
>100_bases AACATCATCCCGGATGGCGCCCGGCCGGCCAGCTGACATGGTTGATATCGCCATCATCGGCGCTGGCCCCGCCGGCATGG CCGCGGCCATCGCCGCGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: SoxA Protein; Sarcosine Oxidase Subunit Alpha; NAD(FAD)-Dependent Dehydrogenase; Ferredoxin
Number of amino acids: Translated: 125; Mature: 124
Protein sequence:
>125_residues MPTDSFFQPLAQAGASTAATIAVTLNGQPLQVPVGSSVAAALLAAGVNRFRNSPVSGEGRAPYCMMGVCFECLLEINGVP NRQGCLVPLEAGMAIRTQDGMRDLLAEAKDPAMALAQAMEAPHGV
Sequences:
>Translated_125_residues MPTDSFFQPLAQAGASTAATIAVTLNGQPLQVPVGSSVAAALLAAGVNRFRNSPVSGEGRAPYCMMGVCFECLLEINGVP NRQGCLVPLEAGMAIRTQDGMRDLLAEAKDPAMALAQAMEAPHGV >Mature_124_residues PTDSFFQPLAQAGASTAATIAVTLNGQPLQVPVGSSVAAALLAAGVNRFRNSPVSGEGRAPYCMMGVCFECLLEINGVPN RQGCLVPLEAGMAIRTQDGMRDLLAEAKDPAMALAQAMEAPHGV
Specific function: Unknown
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12871; Mature: 12740
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 8.8 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 8.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTDSFFQPLAQAGASTAATIAVTLNGQPLQVPVGSSVAAALLAAGVNRFRNSPVSGEGR CCCHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC APYCMMGVCFECLLEINGVPNRQGCLVPLEAGMAIRTQDGMRDLLAEAKDPAMALAQAME CCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEECHHHHHHHHHHCCCHHHHHHHHHC APHGV CCCCC >Mature Secondary Structure PTDSFFQPLAQAGASTAATIAVTLNGQPLQVPVGSSVAAALLAAGVNRFRNSPVSGEGR CCHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC APYCMMGVCFECLLEINGVPNRQGCLVPLEAGMAIRTQDGMRDLLAEAKDPAMALAQAME CCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEECHHHHHHHHHHCCCHHHHHHHHHC APHGV CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA