| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is cysU [C]
Identifier: 91790191
GI number: 91790191
Start: 4594774
End: 4595538
Strand: Reverse
Name: cysU [C]
Synonym: Bpro_4356
Alternate gene names: 91790191
Gene position: 4595538-4594774 (Counterclockwise)
Preceding gene: 91790193
Following gene: 91790190
Centisome position: 88.37
GC content: 52.81
Gene sequence:
>765_bases ATGATTCGATCGATTTCCGTGGTGTACGGAATCTATTTGCTGCTACCCATCGCCCTCCTGATGGTGGGCAGCGTCGGTGG TTCCTGGACCAACTCACTTCTGCCAACCGGAATAACGTCGCAGTGGTATCTTGATCTGTGGAGTGATACCTCCTTTCGCA AGGCGTTCACCACGAGTCTTGTGGTTGCAGGCAGTGCCTGCGTAGTTAACGCATTGATCGCCGTCCCGCTGTCTTATTCC CTCTATCACGGTGCCAAGAACCGAGGTAGCTTCGCTGCAAAGATTGTCAGCGCCATGCCGGTGGCGGTGCCAACCATCAC TCTTGGCTTCGGATACATCATTGTCTTCAACAGTGATCTCGCGCCATGGCTGGGCTCGATGCCACTGCTGATTGCCGCGC ATGCAGTGCACACATTGCCGTATTTAACAAATACGTTGCTCTCGGATTTGCGTCATCTTGGACTCGAGCGCTTGGAGAAC GCCGCGGCAACGCTGGGTGCTTCTGCTTGGCAGCAGTTCACGGGAATCGTCGTACCGAACTTGCGCCAGAGCCTTCTAAG TGGTCTTGTGATGGTTGCTGCCATTTCCATCGGTGAGTTTGGGCTATCGAATTTACTGACGAGTTTTCAGAATCGAACCT ACCCAGTCGTGCTACTGCAGGCCTTCTATGGCGCAACGGGTTTTGCTTGTGCAGCTACCGTAATTTTGTTGGTGCTGGCC AGCTTCTCCGCATTCATTTCTTCAACAGTTGTCAAAAAATCATGA
Upstream 100 bases:
>100_bases TTCACTTGTCGCCTGCGAGGTGAAGCCTAGAATTCGAGCATTGCTGGAAGACTTCAGCGTAAAACAGTTCAGGTTTGAAA CCTGACAGGCGGAGACAAAA
Downstream 100 bases:
>100_bases GTCTAGTCTTAGAGCAAGTTGGCTTTTCCTATCCGGGCACCAGCCATGGCGTCGAAAACATCTCAATCAATGTAGCGTCT GGGGAACTGGTGGCGGTTAT
Product: binding-protein-dependent transport systems inner membrane component
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: ABC Transporter Permease; Spermidine/Putrescine ABC Transporter Permease; ABC-Type Transporter Permease Component; Permease Of ABC Transporter; Polyamine ABC Transporter Permease Protein; Spermidine/Putrescine ABC Transporter Permease Protein; Spermidine/Putrescine ABC Transporter; Transmembrane Component Of ABC Transporter; ABC Transporter Membrane Protein; Ornithine Carbamoyltransferase; Spermidine/Putrescine Transport System Permease Protein; ABC Transporter Membrane Component; Sulfate ABC Transporter Permease Protein CysW; ABC Transporter; Sulfate ABC Transporter Inner Membrane Subunit CysW; ABC-Type Iron(III) Transport System Permease Component; ABC Polyamine Transporter Inner Membrane Subunit; ABC Transport System Permease Protein; ABC Transporter Integral Membrane Protein; ABC-Type Transport System Permease Protein; ABC TRANSPORTER Membrane Component; ABC Transporter Inner Membrane Protein; ABC Transport System Permease Component; Molybdenum ABC Transporter Permease; Spermidine/Putrescine Abc Transporter Permease Protein; Permease Protein; ABC Transporter Membrane Spanning Protein; ABC Transporter, Permease Component Fragment; ABC Transporter Permease Component; Iron ABC Transporter Permease
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MIRSISVVYGIYLLLPIALLMVGSVGGSWTNSLLPTGITSQWYLDLWSDTSFRKAFTTSLVVAGSACVVNALIAVPLSYS LYHGAKNRGSFAAKIVSAMPVAVPTITLGFGYIIVFNSDLAPWLGSMPLLIAAHAVHTLPYLTNTLLSDLRHLGLERLEN AAATLGASAWQQFTGIVVPNLRQSLLSGLVMVAAISIGEFGLSNLLTSFQNRTYPVVLLQAFYGATGFACAATVILLVLA SFSAFISSTVVKKS
Sequences:
>Translated_254_residues MIRSISVVYGIYLLLPIALLMVGSVGGSWTNSLLPTGITSQWYLDLWSDTSFRKAFTTSLVVAGSACVVNALIAVPLSYS LYHGAKNRGSFAAKIVSAMPVAVPTITLGFGYIIVFNSDLAPWLGSMPLLIAAHAVHTLPYLTNTLLSDLRHLGLERLEN AAATLGASAWQQFTGIVVPNLRQSLLSGLVMVAAISIGEFGLSNLLTSFQNRTYPVVLLQAFYGATGFACAATVILLVLA SFSAFISSTVVKKS >Mature_254_residues MIRSISVVYGIYLLLPIALLMVGSVGGSWTNSLLPTGITSQWYLDLWSDTSFRKAFTTSLVVAGSACVVNALIAVPLSYS LYHGAKNRGSFAAKIVSAMPVAVPTITLGFGYIIVFNSDLAPWLGSMPLLIAAHAVHTLPYLTNTLLSDLRHLGLERLEN AAATLGASAWQQFTGIVVPNLRQSLLSGLVMVAAISIGEFGLSNLLTSFQNRTYPVVLLQAFYGATGFACAATVILLVLA SFSAFISSTVVKKS
Specific function: Part Of The Abc Transporter Complex Cysawtp (Tc 3.A.1.6.1) Involved In Sulfate/Thiosulfate Import. Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]
COG id: COG1177
COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26950; Mature: 26950
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRSISVVYGIYLLLPIALLMVGSVGGSWTNSLLPTGITSQWYLDLWSDTSFRKAFTTSL CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHEECCCCHHHHHHHHHH VVAGSACVVNALIAVPLSYSLYHGAKNRGSFAAKIVSAMPVAVPTITLGFGYIIVFNSDL HHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEECCCC APWLGSMPLLIAAHAVHTLPYLTNTLLSDLRHLGLERLENAAATLGASAWQQFTGIVVPN CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LRQSLLSGLVMVAAISIGEFGLSNLLTSFQNRTYPVVLLQAFYGATGFACAATVILLVLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH SFSAFISSTVVKKS HHHHHHHHHHHCCC >Mature Secondary Structure MIRSISVVYGIYLLLPIALLMVGSVGGSWTNSLLPTGITSQWYLDLWSDTSFRKAFTTSL CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHEECCCCHHHHHHHHHH VVAGSACVVNALIAVPLSYSLYHGAKNRGSFAAKIVSAMPVAVPTITLGFGYIIVFNSDL HHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEECCCC APWLGSMPLLIAAHAVHTLPYLTNTLLSDLRHLGLERLENAAATLGASAWQQFTGIVVPN CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH LRQSLLSGLVMVAAISIGEFGLSNLLTSFQNRTYPVVLLQAFYGATGFACAATVILLVLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH SFSAFISSTVVKKS HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA