| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is tal [H]
Identifier: 91790185
GI number: 91790185
Start: 4589338
End: 4590300
Strand: Reverse
Name: tal [H]
Synonym: Bpro_4350
Alternate gene names: 91790185
Gene position: 4590300-4589338 (Counterclockwise)
Preceding gene: 91790186
Following gene: 91790184
Centisome position: 88.27
GC content: 53.37
Gene sequence:
>963_bases ATGAATCAGCTCGAATCACTCAGGCAATTTACTACTGTCGTTGTCGATACCGGAGATTTCAATGAGATATCACGCTTTCG ACCAACAGATGCGACAACCAACCCATCGTTAATTCTGAAGGCAGTCCAGCAGCAAGAATATCGAAGCTTGTTGGATTCAA CAGTCAGTGCTGAAAAAAAACAACCGCTCGACCTCGTCATGGATCAGCTACTGGTTCGATTCGGTTGCGAAATCCTCAAG TTGGTCCCGGGACGGGTATCAACCGAGATCGATCCACGCTTAAGCTTTGATGCCAACGCCACCGTGGCTCGCGCAGAGAG AATCATCGCCTTGTACGAGGCTAACGGCATCGCGCCAGAGCGAGTGCTGATCAAAATTGCCTCGACGTGGGAAGGCATCC AGGCCGCGGCCCAGCTTGAGAGCCGAGGTATTCATACGAATCTGACGCTTCTGTTCTCGCTAACCCAGGCGGTCGCTTGC AGCCAGGCAAAGGTAAAACTCATCTCCCCATTTGTCGGTCGAATATACGACTGGCACCGCAAGCAAGCGGGGGCAGCTTG GAACGAAGGCGAGGGCTTGGGGGTGACCGATCCAGGCGTGCAGGTTGTCCGTCAGATATTCCATTACTACAAAAAGTTTG CAATCCCGACGGAAGTAATGGGCGCTAGCTTCAGAAACCTCCACCAAATCCGTAGTTTGGCTGGTTGCGATCTGCTAACG ATCAGCCCGCAGCTTCTGGCGCAACTTGAGTCCCATGATGAGCCTTGCAGTATTCATCTCGCCGCGAGTGATGCGGACGA CGTAGCGCTAGCGCCGCTGGCTTGCGACGAAGCAAGCTTCCGCTTTGCAATGAATGAAGATGCCATGGTGACCGAGAAGC TGGCGGAGGGAATCCGCCTGTTTTGTAGAGATCTTCAGGCACTTGAACAGATTATTGCCGGCACTACTTCCGTCCCCGCA TGA
Upstream 100 bases:
>100_bases GACTAGCATTTCTTTCAACTCCCAGGTCATTGGCTGAGGATATGCGTCGTCAGTTGCGGGGCTGCGCTATTTCCCGGACC TATATCTTCAAAGTGTCACC
Downstream 100 bases:
>100_bases GCAGGCGGATTGCCAAGGATCTGCAATAGCACTGCAGCTGCCCAATAAAAATCTTACTGAACCTCAGGCAACCGACAATG ACTGCTTCATCCCTCTCTCT
Product: transaldolase B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MNQLESLRQFTTVVVDTGDFNEISRFRPTDATTNPSLILKAVQQQEYRSLLDSTVSAEKKQPLDLVMDQLLVRFGCEILK LVPGRVSTEIDPRLSFDANATVARAERIIALYEANGIAPERVLIKIASTWEGIQAAAQLESRGIHTNLTLLFSLTQAVAC SQAKVKLISPFVGRIYDWHRKQAGAAWNEGEGLGVTDPGVQVVRQIFHYYKKFAIPTEVMGASFRNLHQIRSLAGCDLLT ISPQLLAQLESHDEPCSIHLAASDADDVALAPLACDEASFRFAMNEDAMVTEKLAEGIRLFCRDLQALEQIIAGTTSVPA
Sequences:
>Translated_320_residues MNQLESLRQFTTVVVDTGDFNEISRFRPTDATTNPSLILKAVQQQEYRSLLDSTVSAEKKQPLDLVMDQLLVRFGCEILK LVPGRVSTEIDPRLSFDANATVARAERIIALYEANGIAPERVLIKIASTWEGIQAAAQLESRGIHTNLTLLFSLTQAVAC SQAKVKLISPFVGRIYDWHRKQAGAAWNEGEGLGVTDPGVQVVRQIFHYYKKFAIPTEVMGASFRNLHQIRSLAGCDLLT ISPQLLAQLESHDEPCSIHLAASDADDVALAPLACDEASFRFAMNEDAMVTEKLAEGIRLFCRDLQALEQIIAGTTSVPA >Mature_320_residues MNQLESLRQFTTVVVDTGDFNEISRFRPTDATTNPSLILKAVQQQEYRSLLDSTVSAEKKQPLDLVMDQLLVRFGCEILK LVPGRVSTEIDPRLSFDANATVARAERIIALYEANGIAPERVLIKIASTWEGIQAAAQLESRGIHTNLTLLFSLTQAVAC SQAKVKLISPFVGRIYDWHRKQAGAAWNEGEGLGVTDPGVQVVRQIFHYYKKFAIPTEVMGASFRNLHQIRSLAGCDLLT ISPQLLAQLESHDEPCSIHLAASDADDVALAPLACDEASFRFAMNEDAMVTEKLAEGIRLFCRDLQALEQIIAGTTSVPA
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway [H]
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 1 subfamily [H]
Homologues:
Organism=Homo sapiens, GI5803187, Length=316, Percent_Identity=51.5822784810127, Blast_Score=315, Evalue=2e-86, Organism=Escherichia coli, GI1786189, Length=318, Percent_Identity=50.314465408805, Blast_Score=300, Evalue=1e-82, Organism=Escherichia coli, GI1788807, Length=322, Percent_Identity=49.3788819875776, Blast_Score=297, Evalue=7e-82, Organism=Caenorhabditis elegans, GI25153750, Length=320, Percent_Identity=53.4375, Blast_Score=329, Evalue=1e-90, Organism=Caenorhabditis elegans, GI25153752, Length=166, Percent_Identity=51.8072289156626, Blast_Score=169, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17570473, Length=93, Percent_Identity=52.6881720430108, Blast_Score=100, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6321480, Length=321, Percent_Identity=48.9096573208723, Blast_Score=304, Evalue=1e-83, Organism=Saccharomyces cerevisiae, GI6323386, Length=321, Percent_Identity=53.5825545171339, Blast_Score=301, Evalue=1e-82, Organism=Drosophila melanogaster, GI45549185, Length=319, Percent_Identity=52.0376175548589, Blast_Score=322, Evalue=2e-88,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004730 - InterPro: IPR018225 [H]
Pfam domain/function: PF00923 Transaldolase [H]
EC number: =2.2.1.2 [H]
Molecular weight: Translated: 35212; Mature: 35212
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS01054 TRANSALDOLASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQLESLRQFTTVVVDTGDFNEISRFRPTDATTNPSLILKAVQQQEYRSLLDSTVSAEKK CCHHHHHHHHHHHEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC QPLDLVMDQLLVRFGCEILKLVPGRVSTEIDPRLSFDANATVARAERIIALYEANGIAPE CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEECCCCCHH RVLIKIASTWEGIQAAAQLESRGIHTNLTLLFSLTQAVACSQAKVKLISPFVGRIYDWHR HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQAGAAWNEGEGLGVTDPGVQVVRQIFHYYKKFAIPTEVMGASFRNLHQIRSLAGCDLLT HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE ISPQLLAQLESHDEPCSIHLAASDADDVALAPLACDEASFRFAMNEDAMVTEKLAEGIRL ECHHHHHHHHCCCCCEEEEEEECCCCCEEECCEECCCCCEEEECCCCHHHHHHHHHHHHH FCRDLQALEQIIAGTTSVPA HHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNQLESLRQFTTVVVDTGDFNEISRFRPTDATTNPSLILKAVQQQEYRSLLDSTVSAEKK CCHHHHHHHHHHHEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC QPLDLVMDQLLVRFGCEILKLVPGRVSTEIDPRLSFDANATVARAERIIALYEANGIAPE CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEEECCCCCHH RVLIKIASTWEGIQAAAQLESRGIHTNLTLLFSLTQAVACSQAKVKLISPFVGRIYDWHR HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQAGAAWNEGEGLGVTDPGVQVVRQIFHYYKKFAIPTEVMGASFRNLHQIRSLAGCDLLT HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEE ISPQLLAQLESHDEPCSIHLAASDADDVALAPLACDEASFRFAMNEDAMVTEKLAEGIRL ECHHHHHHHHCCCCCEEEEEEECCCCCEEECCEECCCCCEEEECCCCHHHHHHHHHHHHH FCRDLQALEQIIAGTTSVPA HHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA