| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is paaF [C]
Identifier: 91789997
GI number: 91789997
Start: 4374335
End: 4375114
Strand: Reverse
Name: paaF [C]
Synonym: Bpro_4159
Alternate gene names: 91789997
Gene position: 4375114-4374335 (Counterclockwise)
Preceding gene: 91789998
Following gene: 91789996
Centisome position: 84.13
GC content: 63.59
Gene sequence:
>780_bases ATGGCTGCAATTCAAATTACCCAAGCGGGGCCGCTGCTGACCCTCACCCTGAGTCGTCCGGAGGTGCGCAATGCTTTCAA CGATGAAGTGATCGCCGAATTGACAGCGGCGTTCGCGCAGGCAGGCCGGCGCGAGGACGTGCGCGCGGTGGTGCTGGCGG CCGAAGGGCCGGCCTTTTGCGCTGGCGCCGACCTGAACTGGATGCGGCGCATGGCGGACTACACGCGCGAGGAAAACCTG GCCGATGCGGCGCAACTGGCCGAGATGCTGCGTGCCATTTATGAATGCCCGAAACCCACCGTGGCGCGCATTCAGGGCGA TGTGTATGCGGGCGGCATGGGGCTGGTGGCGGCCTGCGACATCGCCGTCTCTGGCGACACGGCGCAGTACTGCCTCAGCG AAGTCAAGCTGGGCCTGATCCCAGCCACCATCAGCCCTTATGTGATTCGCGCCATGGGCGCGCGCGCAGCCCACCGCTAT TTTTTGACGGCTGAGCGTTTTGATGCCCAGGAGGCGCATCGCATCGGTTTCATTCATGAAGTGGTGAGCGCCGTCGCGCT CGATGCCAAGGTGGCCGAGATTGCACAGGCGCTGGTCAATGCCAGCCCGCAGGCGGTGAAAGCCTGCAAGCGGCTGGTGC AGGATGTGGCACAGCACGACATCACGCCCGCCCTGATCGCGCAAACCGTGCAGGGCATTGCCGATATTCGTTCCAGCGAA CAGGGCAAGGAGGGCGTGCAGTCTTTCCTGCAAAAGCGCAAGCCGTCCTGGATCATCTGA
Upstream 100 bases:
>100_bases CGACCCGGCCGATACGCGCCGTGTGCTGGCGCTGGGCTTGAGCGCTGCGCGCAATGCGCCGATTCCAGAGACCAAGTTTG GTTTGTTCAGGATGTAAGCC
Downstream 100 bases:
>100_bases TGCTCCCCCCCTTTGCTTGCTCACTTCGTGTAGCCGCCTCCCCCCTCAAGGGGGTAACACCAGCGGTCCGGCCCTTCGAC AGGCTCAGGACAGGCCAAGG
Product: enoyl-CoA hydratase
Products: NA
Alternate protein names: 3-hydroxypropionyl-CoA dehydratase [H]
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MAAIQITQAGPLLTLTLSRPEVRNAFNDEVIAELTAAFAQAGRREDVRAVVLAAEGPAFCAGADLNWMRRMADYTREENL ADAAQLAEMLRAIYECPKPTVARIQGDVYAGGMGLVAACDIAVSGDTAQYCLSEVKLGLIPATISPYVIRAMGARAAHRY FLTAERFDAQEAHRIGFIHEVVSAVALDAKVAEIAQALVNASPQAVKACKRLVQDVAQHDITPALIAQTVQGIADIRSSE QGKEGVQSFLQKRKPSWII
Sequences:
>Translated_259_residues MAAIQITQAGPLLTLTLSRPEVRNAFNDEVIAELTAAFAQAGRREDVRAVVLAAEGPAFCAGADLNWMRRMADYTREENL ADAAQLAEMLRAIYECPKPTVARIQGDVYAGGMGLVAACDIAVSGDTAQYCLSEVKLGLIPATISPYVIRAMGARAAHRY FLTAERFDAQEAHRIGFIHEVVSAVALDAKVAEIAQALVNASPQAVKACKRLVQDVAQHDITPALIAQTVQGIADIRSSE QGKEGVQSFLQKRKPSWII >Mature_258_residues AAIQITQAGPLLTLTLSRPEVRNAFNDEVIAELTAAFAQAGRREDVRAVVLAAEGPAFCAGADLNWMRRMADYTREENLA DAAQLAEMLRAIYECPKPTVARIQGDVYAGGMGLVAACDIAVSGDTAQYCLSEVKLGLIPATISPYVIRAMGARAAHRYF LTAERFDAQEAHRIGFIHEVVSAVALDAKVAEIAQALVNASPQAVKACKRLVQDVAQHDITPALIAQTVQGIADIRSSEQ GKEGVQSFLQKRKPSWII
Specific function: Plays a role in autotrophic carbon fixation via the 3- hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl- CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crot
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI31542718, Length=244, Percent_Identity=28.6885245901639, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI194097323, Length=246, Percent_Identity=27.2357723577236, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI70995211, Length=259, Percent_Identity=29.3436293436293, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI221136756, Length=248, Percent_Identity=22.9838709677419, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI221136753, Length=248, Percent_Identity=22.9838709677419, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI221307494, Length=248, Percent_Identity=22.9838709677419, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI4502327, Length=258, Percent_Identity=26.7441860465116, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI116235487, Length=232, Percent_Identity=22.8448275862069, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787659, Length=259, Percent_Identity=29.7297297297297, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1788597, Length=249, Percent_Identity=27.710843373494, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI221142681, Length=268, Percent_Identity=27.2388059701493, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787660, Length=251, Percent_Identity=29.0836653386454, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI87082183, Length=239, Percent_Identity=23.4309623430962, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788682, Length=187, Percent_Identity=28.3422459893048, Blast_Score=64, Evalue=9e-12, Organism=Caenorhabditis elegans, GI25145438, Length=246, Percent_Identity=26.4227642276423, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17540714, Length=213, Percent_Identity=30.0469483568075, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17554946, Length=244, Percent_Identity=26.6393442622951, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17540306, Length=178, Percent_Identity=27.5280898876405, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17535521, Length=225, Percent_Identity=23.5555555555556, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17536985, Length=240, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17549921, Length=213, Percent_Identity=24.8826291079812, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560910, Length=180, Percent_Identity=27.2222222222222, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI20129971, Length=242, Percent_Identity=28.5123966942149, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24653477, Length=242, Percent_Identity=28.5123966942149, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24653139, Length=249, Percent_Identity=26.1044176706827, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24654903, Length=218, Percent_Identity=26.605504587156, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI19922422, Length=243, Percent_Identity=23.4567901234568, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI19920382, Length=209, Percent_Identity=27.7511961722488, Blast_Score=72, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.116 [H]
Molecular weight: Translated: 27874; Mature: 27743
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAIQITQAGPLLTLTLSRPEVRNAFNDEVIAELTAAFAQAGRREDVRAVVLAAEGPAFC CCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEE AGADLNWMRRMADYTREENLADAAQLAEMLRAIYECPKPTVARIQGDVYAGGMGLVAACD CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECCCHHHHHHH IAVSGDTAQYCLSEVKLGLIPATISPYVIRAMGARAAHRYFLTAERFDAQEAHRIGFIHE EEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH VVSAVALDAKVAEIAQALVNASPQAVKACKRLVQDVAQHDITPALIAQTVQGIADIRSSE HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC QGKEGVQSFLQKRKPSWII CHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AAIQITQAGPLLTLTLSRPEVRNAFNDEVIAELTAAFAQAGRREDVRAVVLAAEGPAFC CEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEE AGADLNWMRRMADYTREENLADAAQLAEMLRAIYECPKPTVARIQGDVYAGGMGLVAACD CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEECCCHHHHHHH IAVSGDTAQYCLSEVKLGLIPATISPYVIRAMGARAAHRYFLTAERFDAQEAHRIGFIHE EEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH VVSAVALDAKVAEIAQALVNASPQAVKACKRLVQDVAQHDITPALIAQTVQGIADIRSSE HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC QGKEGVQSFLQKRKPSWII CHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA