| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yngE [H]
Identifier: 91789998
GI number: 91789998
Start: 4375118
End: 4376725
Strand: Reverse
Name: yngE [H]
Synonym: Bpro_4160
Alternate gene names: 91789998
Gene position: 4376725-4375118 (Counterclockwise)
Preceding gene: 91789999
Following gene: 91789997
Centisome position: 84.16
GC content: 63.5
Gene sequence:
>1608_bases ATGACCATCCTCGATACCAATTTGAACCCCCGCTCGGCCGATTTTCAGGCCAACGCCGACGCCATGCGCGCGCTGGTGGA CGACCTCCATGTGCAGATTGCCAAGGCGGCGGCCGGCGGTGGTGACGCCGCGCGCGCCAAGCACACGGCCCGCGGCAAGC TGCTGCCGCGCGAGCGCGTGCAGATGCTGCTGGACCCGGGCACACCATTCCTTGAATTGGCGCCGCTGGCCGCGCACGGC ATGTACCACGGCGATGCGCCCTGCGCCGGCCTCATTGCGGGCATAGGCCGCGTCAGTGGCGTGGACTGCATGATCGTCTG CAATGACGCCACCGTCAAAGGCGGCACCTACTACCCGCTCACGGTCAAAAAACATTTGCGGGCCCAGGAAATCGCGCAGC AGAACTGCTTGCCCTGTGTTTACCTGGTGGACTCGGGCGGCGCCAATTTGCCGAACCAGGACGAGGTGTTTCCTGACCGC GATCACTTCGGCCGCATCTTTTACAACCAGGCCAATATGAGCGCGCAGGGCATCGCACAGATTGCCGTGGTGATGGGCTC CTGCACGGCGGGCGGTGCGTATGTGCCTGCCATGAGCGACGAAAGCATCATCGTCAAGAACCAGGGCACGATTTTTCTGG GTGGGCCGCCCCTGGTCAAGGCGGCGACGGGCGAAGTCGTCAGCGCCGAGGACCTGGGCGGTGGCGATGTGCACACCCGC CTGTCGGGCGTGGCCGATCATCTGGCGCAAAACGACATGCATGCGCTGGCGCTGGCCCGTGCCTCCGTCAAGAATTTGAA TAAAAACAAGGCCTCAGCCCAGACGGTACAGGCGTCAATAGCTCCTAAATTCATGGCAAAAGAGCTGTACGGCGTGATTC CCGTGGACACGCGCAAACCCTTCGACGTGCGCGAGATCATCGCCCGCATCGTCGATGGCAGCGAGTTCGACGAGTTCAAG GCGCGTTACGGCGCCACGCTGGTCTGCGGCTTCGCGCATATCGAGGGCATGCCGGTCGGCATCATTGCCAACAATGGCAT TTTGTTCAGCGAGTCGGCGCTCAAGGCCACGCATTTCATCGAGCTGTGCTGCCAGCGCAAGATTCCGCTGGTGTTCTTGC AGAACATCACCGGCTTCATGGTGGGCCGCAAGTACGAAAACGAAGGCATCGCGCGCAATGGCGCCAAGATGGTCACGGCC GTGGCCACGGCGGCGGTGCCCAAGTTCACCATCATCATCGGCGGCAGCTTTGGCGCGGGCAACTACGGCATGTGCGGCCG CGCCTATTCGCCGCGCTTCCTCTGGATGTGGCCGAACGCGCGCATCAGCGTGATGGGCGGCGACCAGGCCGCCGGCGTAC TGGCAACGGTCAAGCGCGACGGCATTGAAGCCAAGGGCGGCGCCTGGTCGCCCGAGGAGGAAGAGGCCTTCAAGGCGCCG ATACGCCAGCAGTACGAACACCAGGGCCACCCCTACTATGCGACGGCGCGGCTCTGGGATGACGGTGTGATCGACCCGGC CGATACGCGCCGTGTGCTGGCGCTGGGCTTGAGCGCTGCGCGCAATGCGCCGATTCCAGAGACCAAGTTTGGTTTGTTCA GGATGTAA
Upstream 100 bases:
>100_bases TGACGGTGACCGGCAAAATCCAGAAGTTCAAGATTCGCGACGAAATGAAGCACCAGCTGGGGCTGGAAGAAGACAAAACC GCTTGAAAGAGACAGTCTGA
Downstream 100 bases:
>100_bases GCCATGGCTGCAATTCAAATTACCCAAGCGGGGCCGCTGCTGACCCTCACCCTGAGTCGTCCGGAGGTGCGCAATGCTTT CAACGATGAAGTGATCGCCG
Product: propionyl-CoA carboxylase
Products: ADP; phosphate; (S)-methylmalonyl-CoA
Alternate protein names: NA
Number of amino acids: Translated: 535; Mature: 534
Protein sequence:
>535_residues MTILDTNLNPRSADFQANADAMRALVDDLHVQIAKAAAGGGDAARAKHTARGKLLPRERVQMLLDPGTPFLELAPLAAHG MYHGDAPCAGLIAGIGRVSGVDCMIVCNDATVKGGTYYPLTVKKHLRAQEIAQQNCLPCVYLVDSGGANLPNQDEVFPDR DHFGRIFYNQANMSAQGIAQIAVVMGSCTAGGAYVPAMSDESIIVKNQGTIFLGGPPLVKAATGEVVSAEDLGGGDVHTR LSGVADHLAQNDMHALALARASVKNLNKNKASAQTVQASIAPKFMAKELYGVIPVDTRKPFDVREIIARIVDGSEFDEFK ARYGATLVCGFAHIEGMPVGIIANNGILFSESALKATHFIELCCQRKIPLVFLQNITGFMVGRKYENEGIARNGAKMVTA VATAAVPKFTIIIGGSFGAGNYGMCGRAYSPRFLWMWPNARISVMGGDQAAGVLATVKRDGIEAKGGAWSPEEEEAFKAP IRQQYEHQGHPYYATARLWDDGVIDPADTRRVLALGLSAARNAPIPETKFGLFRM
Sequences:
>Translated_535_residues MTILDTNLNPRSADFQANADAMRALVDDLHVQIAKAAAGGGDAARAKHTARGKLLPRERVQMLLDPGTPFLELAPLAAHG MYHGDAPCAGLIAGIGRVSGVDCMIVCNDATVKGGTYYPLTVKKHLRAQEIAQQNCLPCVYLVDSGGANLPNQDEVFPDR DHFGRIFYNQANMSAQGIAQIAVVMGSCTAGGAYVPAMSDESIIVKNQGTIFLGGPPLVKAATGEVVSAEDLGGGDVHTR LSGVADHLAQNDMHALALARASVKNLNKNKASAQTVQASIAPKFMAKELYGVIPVDTRKPFDVREIIARIVDGSEFDEFK ARYGATLVCGFAHIEGMPVGIIANNGILFSESALKATHFIELCCQRKIPLVFLQNITGFMVGRKYENEGIARNGAKMVTA VATAAVPKFTIIIGGSFGAGNYGMCGRAYSPRFLWMWPNARISVMGGDQAAGVLATVKRDGIEAKGGAWSPEEEEAFKAP IRQQYEHQGHPYYATARLWDDGVIDPADTRRVLALGLSAARNAPIPETKFGLFRM >Mature_534_residues TILDTNLNPRSADFQANADAMRALVDDLHVQIAKAAAGGGDAARAKHTARGKLLPRERVQMLLDPGTPFLELAPLAAHGM YHGDAPCAGLIAGIGRVSGVDCMIVCNDATVKGGTYYPLTVKKHLRAQEIAQQNCLPCVYLVDSGGANLPNQDEVFPDRD HFGRIFYNQANMSAQGIAQIAVVMGSCTAGGAYVPAMSDESIIVKNQGTIFLGGPPLVKAATGEVVSAEDLGGGDVHTRL SGVADHLAQNDMHALALARASVKNLNKNKASAQTVQASIAPKFMAKELYGVIPVDTRKPFDVREIIARIVDGSEFDEFKA RYGATLVCGFAHIEGMPVGIIANNGILFSESALKATHFIELCCQRKIPLVFLQNITGFMVGRKYENEGIARNGAKMVTAV ATAAVPKFTIIIGGSFGAGNYGMCGRAYSPRFLWMWPNARISVMGGDQAAGVLATVKRDGIEAKGGAWSPEEEEAFKAPI RQQYEHQGHPYYATARLWDDGVIDPADTRRVLALGLSAARNAPIPETKFGLFRM
Specific function: Unknown
COG id: COG4799
COG function: function code I; Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 carboxyltransferase domain [H]
Homologues:
Organism=Homo sapiens, GI11545863, Length=533, Percent_Identity=66.4165103189493, Blast_Score=719, Evalue=0.0, Organism=Homo sapiens, GI119943100, Length=489, Percent_Identity=31.6973415132924, Blast_Score=216, Evalue=5e-56, Organism=Homo sapiens, GI295821216, Length=510, Percent_Identity=30.3921568627451, Blast_Score=206, Evalue=5e-53, Organism=Homo sapiens, GI310133460, Length=135, Percent_Identity=60, Blast_Score=155, Evalue=6e-38, Organism=Caenorhabditis elegans, GI17552936, Length=533, Percent_Identity=60.2251407129456, Blast_Score=687, Evalue=0.0, Organism=Caenorhabditis elegans, GI25147359, Length=489, Percent_Identity=33.1288343558282, Blast_Score=228, Evalue=6e-60, Organism=Caenorhabditis elegans, GI25147362, Length=489, Percent_Identity=33.1288343558282, Blast_Score=228, Evalue=7e-60, Organism=Drosophila melanogaster, GI24586065, Length=551, Percent_Identity=63.7023593466425, Blast_Score=719, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000022 - InterPro: IPR011763 - InterPro: IPR011762 [H]
Pfam domain/function: PF01039 Carboxyl_trans [H]
EC number: 6.4.1.3
Molecular weight: Translated: 57170; Mature: 57039
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: PS50980 COA_CT_NTER ; PS50989 COA_CT_CTER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTILDTNLNPRSADFQANADAMRALVDDLHVQIAKAAAGGGDAARAKHTARGKLLPRERV CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH QMLLDPGTPFLELAPLAAHGMYHGDAPCAGLIAGIGRVSGVDCMIVCNDATVKGGTYYPL HEEECCCCCCEEECHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEECCCEEEEE TVKKHLRAQEIAQQNCLPCVYLVDSGGANLPNQDEVFPDRDHFGRIFYNQANMSAQGIAQ HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH IAVVMGSCTAGGAYVPAMSDESIIVKNQGTIFLGGPPLVKAATGEVVSAEDLGGGDVHTR HHHHHHCCCCCCEEEECCCCCEEEEECCCEEEECCCCEEEECCCCEEECCCCCCCHHHHH LSGVADHLAQNDMHALALARASVKNLNKNKASAQTVQASIAPKFMAKELYGVIPVDTRKP HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCC FDVREIIARIVDGSEFDEFKARYGATLVCGFAHIEGMPVGIIANNGILFSESALKATHFI CCHHHHHHHHHCCCCHHHHHHHHCCEEEEEEHHHCCCEEEEEECCCEEEECHHHHHHHHH ELCCQRKIPLVFLQNITGFMVGRKYENEGIARNGAKMVTAVATAAVPKFTIIIGGSFGAG HHHHCCCCCEEEECCCHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC NYGMCGRAYSPRFLWMWPNARISVMGGDQAAGVLATVKRDGIEAKGGAWSPEEEEAFKAP CCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHH IRQQYEHQGHPYYATARLWDDGVIDPADTRRVLALGLSAARNAPIPETKFGLFRM HHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TILDTNLNPRSADFQANADAMRALVDDLHVQIAKAAAGGGDAARAKHTARGKLLPRERV EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHH QMLLDPGTPFLELAPLAAHGMYHGDAPCAGLIAGIGRVSGVDCMIVCNDATVKGGTYYPL HEEECCCCCCEEECHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEECCCEEEEE TVKKHLRAQEIAQQNCLPCVYLVDSGGANLPNQDEVFPDRDHFGRIFYNQANMSAQGIAQ HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH IAVVMGSCTAGGAYVPAMSDESIIVKNQGTIFLGGPPLVKAATGEVVSAEDLGGGDVHTR HHHHHHCCCCCCEEEECCCCCEEEEECCCEEEECCCCEEEECCCCEEECCCCCCCHHHHH LSGVADHLAQNDMHALALARASVKNLNKNKASAQTVQASIAPKFMAKELYGVIPVDTRKP HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCC FDVREIIARIVDGSEFDEFKARYGATLVCGFAHIEGMPVGIIANNGILFSESALKATHFI CCHHHHHHHHHCCCCHHHHHHHHCCEEEEEEHHHCCCEEEEEECCCEEEECHHHHHHHHH ELCCQRKIPLVFLQNITGFMVGRKYENEGIARNGAKMVTAVATAAVPKFTIIIGGSFGAG HHHHCCCCCEEEECCCHHHHCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC NYGMCGRAYSPRFLWMWPNARISVMGGDQAAGVLATVKRDGIEAKGGAWSPEEEEAFKAP CCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHH IRQQYEHQGHPYYATARLWDDGVIDPADTRRVLALGLSAARNAPIPETKFGLFRM HHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; propanoyl-CoA; HCO3-
Specific reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 9387222 [H]