| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789990
Identifier: 91789990
GI number: 91789990
Start: 4366069
End: 4367529
Strand: Direct
Name: 91789990
Synonym: Bpro_4152
Alternate gene names: NA
Gene position: 4366069-4367529 (Clockwise)
Preceding gene: 91789989
Following gene: 91790003
Centisome position: 83.96
GC content: 62.77
Gene sequence:
>1461_bases ATGGAGCCAGCCCCAGACCCCGACCCGCGCCATGATTTCCAGGCCATGCACAGCCCGCTGAGTCAGATTGCACGGCGCGA GCCGGTGACAGTCACGCTGGACACGCCGCTTGGCGAGGCGCTGGCGATCATGGACCGCATGCGCATCGGCTCCATCATCG TGGTGGATGCCCAGGGACAAATGCCCCTGGGCATCTTCACGCTGCGCGACCTGCTGCACCGCGTGACGCTGCCACAGGTC AATCTTGACCAGCCGATTGCCAGCGTCATGACCGGCGGTGTGATCACGGTCAAACCACACACCACCGCCTATGAGGCCCC GCTCATCATGGCCCGACGCGGCCTGCGCCATCTGCTGATGGTGGATGAGGCCGGACACCTGGTCTCCATCGTGTCGCAAA ACGATTTGTTTGCCTTGCAGCGCACCAGCATCAAGGATGTCAGCAACGACATCCGCCAGGCCCGCGATCTGCCGAGCCTG CAGGCCTGCGCCAAGGACATCCAGCGCATCGCCCTGGCTTTGCTCACGCAGGGCATGGCAGCGGGGCAACTAACGCTGTT CGTCTCCACGCTCAACGACCTGCTGACCCTGCGCGTGATTGAACTCACCCACGATGAATTTGACCTGCCGCAAGTCAGGT GGTGCTGGCTCGCGCTGGGCTCCGAGGGGCGCTATGAGCAAACGCTGTGCACCGATCAGGACAACGGCATCATTTTCGCG TGCGAGAACGAAGCGGCCACCGAAGCGCTGCGTCAGCGCTTCCTGCCCTTTGCCCAGGCGGTCAACCACAAGCTTGATGC CTGCGGTTTTCCGCTCTGCAAGGGCGGCATCATGGCGGGCAACCCGCAATGGTGCCTGTCCCTGCCCGAATGGCGCGCCA GGTTCACCGCCTGGATTGAGCACCCGCAACCCAAGGCCTTGCTCAACGCCGCGATTTTTTTCGACTTTCGCCCCCTCTAT GGCGACGAGAGCCTCAGCGACACCCTGCGCACCTGGCTACTCGATCAGACCCGCAACGCGCAACTGTTCCTGCGCCTGAT GACCGAAAATGCGCTGCAATGCGCGCCACCGTTGGGCCTGATTCGCGATTTCGTATTCGACGGCGACAAGGACTTCCCCC ACACCATCAACCTCAAGACATATGGCTCCAGGCCCTTTGTCGATGCGGCGCGCCTGCTCTCACTCGCGCACGGGGTACGG CAGACCAGCACCGCGCAACGCCTGCTGGCCGCTTCCCGGGCCGTGAACTTCGGCGGCGACGATGTGGCGGCCATCGTGGA CAGCTTTTACTACATCCAGCTGCTGCGATTGCGCCACCAGCATCAGGTTCTGGACGCATCAGGCGGGGGCAACCGCATCA ACCCCGACCTGTTGAATGAACTCGATCGCCACATCCTGAAGGAAGCCTTCAAGCAGGCGCGCAAGCTGCAAAGCCGACTC AAACTCGACTACCGGCTATAG
Upstream 100 bases:
>100_bases ATTCCCTTGCTGGCGCAACAGAACATTCACACCTTGCGCCAGGCACGCGAGGCGGCCGCGCGCACCTATTACGCCAGAGT CAGTTACTAAAGGTGACATC
Downstream 100 bases:
>100_bases CGAGCTACAACGGGCTATAGCGCGAAATGGGCTCAGGACGGTCGACGCACAGCACCCGTTTTGACCGCGCCGACGCCCTC CCAATGCCCTTGCGCAAACC
Product: signal-transduction protein
Products: NA
Alternate protein names: OrfX [H]
Number of amino acids: Translated: 486; Mature: 486
Protein sequence:
>486_residues MEPAPDPDPRHDFQAMHSPLSQIARREPVTVTLDTPLGEALAIMDRMRIGSIIVVDAQGQMPLGIFTLRDLLHRVTLPQV NLDQPIASVMTGGVITVKPHTTAYEAPLIMARRGLRHLLMVDEAGHLVSIVSQNDLFALQRTSIKDVSNDIRQARDLPSL QACAKDIQRIALALLTQGMAAGQLTLFVSTLNDLLTLRVIELTHDEFDLPQVRWCWLALGSEGRYEQTLCTDQDNGIIFA CENEAATEALRQRFLPFAQAVNHKLDACGFPLCKGGIMAGNPQWCLSLPEWRARFTAWIEHPQPKALLNAAIFFDFRPLY GDESLSDTLRTWLLDQTRNAQLFLRLMTENALQCAPPLGLIRDFVFDGDKDFPHTINLKTYGSRPFVDAARLLSLAHGVR QTSTAQRLLAASRAVNFGGDDVAAIVDSFYYIQLLRLRHQHQVLDASGGGNRINPDLLNELDRHILKEAFKQARKLQSRL KLDYRL
Sequences:
>Translated_486_residues MEPAPDPDPRHDFQAMHSPLSQIARREPVTVTLDTPLGEALAIMDRMRIGSIIVVDAQGQMPLGIFTLRDLLHRVTLPQV NLDQPIASVMTGGVITVKPHTTAYEAPLIMARRGLRHLLMVDEAGHLVSIVSQNDLFALQRTSIKDVSNDIRQARDLPSL QACAKDIQRIALALLTQGMAAGQLTLFVSTLNDLLTLRVIELTHDEFDLPQVRWCWLALGSEGRYEQTLCTDQDNGIIFA CENEAATEALRQRFLPFAQAVNHKLDACGFPLCKGGIMAGNPQWCLSLPEWRARFTAWIEHPQPKALLNAAIFFDFRPLY GDESLSDTLRTWLLDQTRNAQLFLRLMTENALQCAPPLGLIRDFVFDGDKDFPHTINLKTYGSRPFVDAARLLSLAHGVR QTSTAQRLLAASRAVNFGGDDVAAIVDSFYYIQLLRLRHQHQVLDASGGGNRINPDLLNELDRHILKEAFKQARKLQSRL KLDYRL >Mature_486_residues MEPAPDPDPRHDFQAMHSPLSQIARREPVTVTLDTPLGEALAIMDRMRIGSIIVVDAQGQMPLGIFTLRDLLHRVTLPQV NLDQPIASVMTGGVITVKPHTTAYEAPLIMARRGLRHLLMVDEAGHLVSIVSQNDLFALQRTSIKDVSNDIRQARDLPSL QACAKDIQRIALALLTQGMAAGQLTLFVSTLNDLLTLRVIELTHDEFDLPQVRWCWLALGSEGRYEQTLCTDQDNGIIFA CENEAATEALRQRFLPFAQAVNHKLDACGFPLCKGGIMAGNPQWCLSLPEWRARFTAWIEHPQPKALLNAAIFFDFRPLY GDESLSDTLRTWLLDQTRNAQLFLRLMTENALQCAPPLGLIRDFVFDGDKDFPHTINLKTYGSRPFVDAARLLSLAHGVR QTSTAQRLLAASRAVNFGGDDVAAIVDSFYYIQLLRLRHQHQVLDASGGGNRINPDLLNELDRHILKEAFKQARKLQSRL KLDYRL
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 [H]
Pfam domain/function: PF00571 CBS [H]
EC number: NA
Molecular weight: Translated: 54445; Mature: 54445
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPAPDPDPRHDFQAMHSPLSQIARREPVTVTLDTPLGEALAIMDRMRIGSIIVVDAQGQ CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC MPLGIFTLRDLLHRVTLPQVNLDQPIASVMTGGVITVKPHTTAYEAPLIMARRGLRHLLM CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHEEE VDEAGHLVSIVSQNDLFALQRTSIKDVSNDIRQARDLPSLQACAKDIQRIALALLTQGMA ECCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC AGQLTLFVSTLNDLLTLRVIELTHDEFDLPQVRWCWLALGSEGRYEQTLCTDQDNGIIFA CCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEECCCCCCCHHCCCCCCCCEEEE CENEAATEALRQRFLPFAQAVNHKLDACGFPLCKGGIMAGNPQWCLSLPEWRARFTAWIE ECCHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHCCCCCCCCCHHEECCHHHHHHHHHHHC HPQPKALLNAAIFFDFRPLYGDESLSDTLRTWLLDQTRNAQLFLRLMTENALQCAPPLGL CCCHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCHHH IRDFVFDGDKDFPHTINLKTYGSRPFVDAARLLSLAHGVRQTSTAQRLLAASRAVNFGGD HHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DVAAIVDSFYYIQLLRLRHQHQVLDASGGGNRINPDLLNELDRHILKEAFKQARKLQSRL HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KLDYRL CCCCCC >Mature Secondary Structure MEPAPDPDPRHDFQAMHSPLSQIARREPVTVTLDTPLGEALAIMDRMRIGSIIVVDAQGQ CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCC MPLGIFTLRDLLHRVTLPQVNLDQPIASVMTGGVITVKPHTTAYEAPLIMARRGLRHLLM CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHEEE VDEAGHLVSIVSQNDLFALQRTSIKDVSNDIRQARDLPSLQACAKDIQRIALALLTQGMA ECCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC AGQLTLFVSTLNDLLTLRVIELTHDEFDLPQVRWCWLALGSEGRYEQTLCTDQDNGIIFA CCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEECCCCCCCHHCCCCCCCCEEEE CENEAATEALRQRFLPFAQAVNHKLDACGFPLCKGGIMAGNPQWCLSLPEWRARFTAWIE ECCHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHCCCCCCCCCHHEECCHHHHHHHHHHHC HPQPKALLNAAIFFDFRPLYGDESLSDTLRTWLLDQTRNAQLFLRLMTENALQCAPPLGL CCCHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHCCCCHHH IRDFVFDGDKDFPHTINLKTYGSRPFVDAARLLSLAHGVRQTSTAQRLLAASRAVNFGGD HHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DVAAIVDSFYYIQLLRLRHQHQVLDASGGGNRINPDLLNELDRHILKEAFKQARKLQSRL HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KLDYRL CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11930014; 8522533 [H]