| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is lysN [H]
Identifier: 91789791
GI number: 91789791
Start: 4141045
End: 4142310
Strand: Direct
Name: lysN [H]
Synonym: Bpro_3951
Alternate gene names: 91789791
Gene position: 4141045-4142310 (Clockwise)
Preceding gene: 91789790
Following gene: 91789792
Centisome position: 79.63
GC content: 68.8
Gene sequence:
>1266_bases ATGAGCGCAGCCGCGCGCACGCCGGTCCGCCCGCTCTATGCGCAGGCCAGCGGCTCGCCGATTCGTGCCATGCTGGCACT GGCCGGACAGCCCGGCATGATTTCACTGGCAGGCGGTCATCCCGACCCCGCGCTGCTGCCGGCGGACTGGCTGCGCGAAT GCATGCTGGCCGTGGCCTCCGGCCTGCAGGGGCACAGCCTGCAATACGGTGCCACCGAGGGCCTGCCCGCGCTGCGTGCG GCCAGCGCCGAGCTGCTGCAACAACGCGGCCTGCAGGCCCAGGCCGAGCAAGTGGTGATCACCACCGGCTCGCAGCAGGC CATTGACCTGCTGGCGCGGGTTCTCGTCGAGCCGGGCGCCGGCGTGGCGGTGGAGTCCTTCAACTACCCGGCCGCCCTGC AGGCCTTCCGCTTTGCGGGTGCGCAGCTGGTGGAAGTTCCTGCCGATGCCCAGGGGCTGGATGTCGAGCGGCTCGAAAGT GTTTTGACCAGCGCACGGCCGCGCGTGCTGTATGTGGTTCCGAACTTTGCCAACCCGACAGGTGCCGTGATGCCCCTGGC GCGGCGCGTGCGCCTGCTGGAACTTGCCGCACGGCACGAGGTCACACTGATCGAGGACGATCCTTATGGCGAACTCTGGT TTGGAGCGGCGCCACCGCCCTCGCTGGCGCAGATCAACCAGCAAACCGGATCACATGCGCAGGTAGCCTACATGACGAGT TATTCCAAGGTGGTGGCCCCGGCCCTGCGCCTGGGTGTGCTGATGGCGCCGCCGGACGTGCTGCGCGCCGTCGTGCTGGC CAAGCAGGCCGCCGATGTGCACAGCGGCTCACTGGAGCAGCTGACCCTGACCGCGATGCTGGCCTCCAGCCGCCTGGTTG AGCACCTGGCCATGCTGCGCAAGGCCTACGCGGCCAAGGCCCGCACGCTGGCTGCTGCACTGCACGCACATTGCGGCGGG CTGCTTGAATTCAGCGAGCCCCAGGGCGGCATGTTTGTCTGGGCCCGGCTTGCCAGCGCGTTGCCACTGATGCCGTCGCA GGCGTGGGTGGACTTCGGCCTGCAGCACCAGGTGCTGGCCGTGCCGGGCGCCGCCTTCAGCCTTCACAACACCGCACAGC CCTGGCTGCGCCTGAGTTTTGCCAACCCCGGTGCAGACGCCCTGCTGCAAGGCGCGCAACGCCTGGGCCGCGGGCTGCGC AGCCTTGCCGCCACGGCCGATACGCCATCATCACGCCAACATTTCCCCGAAAGGACTTCACCATGA
Upstream 100 bases:
>100_bases GGCATTTTCGGCATGACGGCGGCCCGCGCATGAGCCGCCGGGCCGCTCCCAAGGCCACTCCCAAGGCGAACACCGGAGCG CTTAGCGCGGAGGTTCACCC
Downstream 100 bases:
>100_bases GCCACGCCAATGACATTTCGTCCCTGCTGCAAAGCCTGGGCATCCACGCCGACCTGAACAGCCAGGCGTCCGCGACCCTT GAGGTTCACACCCCGATTGA
Product: class I/II aminotransferase
Products: NA
Alternate protein names: 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT [H]
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MSAAARTPVRPLYAQASGSPIRAMLALAGQPGMISLAGGHPDPALLPADWLRECMLAVASGLQGHSLQYGATEGLPALRA ASAELLQQRGLQAQAEQVVITTGSQQAIDLLARVLVEPGAGVAVESFNYPAALQAFRFAGAQLVEVPADAQGLDVERLES VLTSARPRVLYVVPNFANPTGAVMPLARRVRLLELAARHEVTLIEDDPYGELWFGAAPPPSLAQINQQTGSHAQVAYMTS YSKVVAPALRLGVLMAPPDVLRAVVLAKQAADVHSGSLEQLTLTAMLASSRLVEHLAMLRKAYAAKARTLAAALHAHCGG LLEFSEPQGGMFVWARLASALPLMPSQAWVDFGLQHQVLAVPGAAFSLHNTAQPWLRLSFANPGADALLQGAQRLGRGLR SLAATADTPSSRQHFPERTSP
Sequences:
>Translated_421_residues MSAAARTPVRPLYAQASGSPIRAMLALAGQPGMISLAGGHPDPALLPADWLRECMLAVASGLQGHSLQYGATEGLPALRA ASAELLQQRGLQAQAEQVVITTGSQQAIDLLARVLVEPGAGVAVESFNYPAALQAFRFAGAQLVEVPADAQGLDVERLES VLTSARPRVLYVVPNFANPTGAVMPLARRVRLLELAARHEVTLIEDDPYGELWFGAAPPPSLAQINQQTGSHAQVAYMTS YSKVVAPALRLGVLMAPPDVLRAVVLAKQAADVHSGSLEQLTLTAMLASSRLVEHLAMLRKAYAAKARTLAAALHAHCGG LLEFSEPQGGMFVWARLASALPLMPSQAWVDFGLQHQVLAVPGAAFSLHNTAQPWLRLSFANPGADALLQGAQRLGRGLR SLAATADTPSSRQHFPERTSP >Mature_420_residues SAAARTPVRPLYAQASGSPIRAMLALAGQPGMISLAGGHPDPALLPADWLRECMLAVASGLQGHSLQYGATEGLPALRAA SAELLQQRGLQAQAEQVVITTGSQQAIDLLARVLVEPGAGVAVESFNYPAALQAFRFAGAQLVEVPADAQGLDVERLESV LTSARPRVLYVVPNFANPTGAVMPLARRVRLLELAARHEVTLIEDDPYGELWFGAAPPPSLAQINQQTGSHAQVAYMTSY SKVVAPALRLGVLMAPPDVLRAVVLAKQAADVHSGSLEQLTLTAMLASSRLVEHLAMLRKAYAAKARTLAAALHAHCGGL LEFSEPQGGMFVWARLASALPLMPSQAWVDFGLQHQVLAVPGAAFSLHNTAQPWLRLSFANPGADALLQGAQRLGRGLRS LAATADTPSSRQHFPERTSP
Specific function: Catalyzes the transfer of an amino group between 2- oxoadipate (2-OA) and glutamate (Glu) to yield alpha-aminodipate (AAA). It can also transaminate glutamate, leucine, and aromatic amino acids. It also conbtributes in the biosynthesis of other amino acid
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI7705897, Length=417, Percent_Identity=27.0983213429257, Blast_Score=154, Evalue=2e-37, Organism=Homo sapiens, GI33469970, Length=417, Percent_Identity=27.0983213429257, Blast_Score=154, Evalue=2e-37, Organism=Escherichia coli, GI1790797, Length=380, Percent_Identity=27.6315789473684, Blast_Score=125, Evalue=7e-30, Organism=Escherichia coli, GI1787710, Length=405, Percent_Identity=26.9135802469136, Blast_Score=124, Evalue=8e-30, Organism=Escherichia coli, GI1788722, Length=394, Percent_Identity=23.6040609137056, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6321929, Length=411, Percent_Identity=23.8442822384428, Blast_Score=109, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6321000, Length=443, Percent_Identity=23.9277652370203, Blast_Score=95, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6321236, Length=470, Percent_Identity=22.1276595744681, Blast_Score=91, Evalue=4e-19, Organism=Drosophila melanogaster, GI21356535, Length=404, Percent_Identity=24.7524752475248, Blast_Score=112, Evalue=4e-25,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.39 [H]
Molecular weight: Translated: 44447; Mature: 44315
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAARTPVRPLYAQASGSPIRAMLALAGQPGMISLAGGHPDPALLPADWLRECMLAVAS CCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC GLQGHSLQYGATEGLPALRAASAELLQQRGLQAQAEQVVITTGSQQAIDLLARVLVEPGA CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC GVAVESFNYPAALQAFRFAGAQLVEVPADAQGLDVERLESVLTSARPRVLYVVPNFANPT CEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC GAVMPLARRVRLLELAARHEVTLIEDDPYGELWFGAAPPPSLAQINQQTGSHAQVAYMTS CHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEECCCCCCHHHHHHHCCCCCEEEEEEHH YSKVVAPALRLGVLMAPPDVLRAVVLAKQAADVHSGSLEQLTLTAMLASSRLVEHLAMLR HHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH KAYAAKARTLAAALHAHCGGLLEFSEPQGGMFVWARLASALPLMPSQAWVDFGLQHQVLA HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCEEEE VPGAAFSLHNTAQPWLRLSFANPGADALLQGAQRLGRGLRSLAATADTPSSRQHFPERTS CCCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC P C >Mature Secondary Structure SAAARTPVRPLYAQASGSPIRAMLALAGQPGMISLAGGHPDPALLPADWLRECMLAVAS CCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC GLQGHSLQYGATEGLPALRAASAELLQQRGLQAQAEQVVITTGSQQAIDLLARVLVEPGA CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC GVAVESFNYPAALQAFRFAGAQLVEVPADAQGLDVERLESVLTSARPRVLYVVPNFANPT CEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC GAVMPLARRVRLLELAARHEVTLIEDDPYGELWFGAAPPPSLAQINQQTGSHAQVAYMTS CHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEECCCCCCHHHHHHHCCCCCEEEEEEHH YSKVVAPALRLGVLMAPPDVLRAVVLAKQAADVHSGSLEQLTLTAMLASSRLVEHLAMLR HHHHHHHHHHHCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH KAYAAKARTLAAALHAHCGGLLEFSEPQGGMFVWARLASALPLMPSQAWVDFGLQHQVLA HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCEEEE VPGAAFSLHNTAQPWLRLSFANPGADALLQGAQRLGRGLRSLAATADTPSSRQHFPERTS CCCCCEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC P C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA