| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gltI [H]
Identifier: 91789746
GI number: 91789746
Start: 4098271
End: 4099167
Strand: Reverse
Name: gltI [H]
Synonym: Bpro_3904
Alternate gene names: 91789746
Gene position: 4099167-4098271 (Counterclockwise)
Preceding gene: 91789747
Following gene: 91789745
Centisome position: 78.83
GC content: 55.74
Gene sequence:
>897_bases ATGAAACTCAAACTAGCCGCTCTGTCCATCGCCTTGCTCGCAACCGGCGGTGCCATCGCCCAGGCGAACGACACCATCGC CAAGGTCAAGGCCTCAGGCGTGGTGACCATGGGGGTGCGCGACTCGTCCGGTCTTTCCTTTACCCTCGGTGACGGCAAGT ACGCCGGTTACCACGTTGACGTGTGTCAGCGCATTCTGGCCAGACTCGAAAAAACGGTAGGCAAGAAACTGGAAGTGAAA TACCTGCCGGTGACATCGCAAAACCGCATTCCCCTGGTGCAAAACGGCACGGTCGATATTGAGTGCGGCTCCACCACCAA TAATGCGACGCGCCAAAAAGATGTTGCGTTTGCTGTGACCACCTTTGTTGAAGAGGTTCGCATTGCGGTGAAAGCCGACT CAGGCATTACGTCTATCGCCCAGCTCAATGGCAAAAGCGTGGCCACCACCACCGGCACCACCTCCGTCCAGACCTTGCGC AAAAACGAGCGCGCCACCGGCATTGACTTCAAGGAAGTCTTCGGCAAAGACCACTCCGACAGCTTTCTGCTGCTGGAGTC CGGCCGTGCCGATGCATTTGTCATGGATGGCTCCATCCTGGCCAGCAACATCGCCAACTCCAAGAACCCCGCCGGCTTCA AGATCGTCGGTGAAGTACTGAGCGTTGAGCCGATTGCCATCATGATGCGCAAAGATGACCCGGCGTTCAAAAAATTGTCG GATGACACCATCAAGGACCTGATCAAGTCCGGCGAGCTGGCAAAAATATATGACAAGTGGCTCATGCAACCTGTTCCACC GAAAAATGTACGCGTTGGGTTGCCAGCCAGCGACAGCACCAAGGCTGCTTGGGCAACGCCTAACGACAAGCCCATGGAAG ATTACGCCAAAAAGTAA
Upstream 100 bases:
>100_bases CCTGAGCCGCTGCGAGAGCCGGGTAAACCTAGGCATGGCCTTGTATCCAGCTCTCTAAAATAGTATCTACTCACCGTTTC ATTTCAACACAGGAGATTCC
Downstream 100 bases:
>100_bases TTCTGGCAGTTGAGTTAAAACCAACCCCGCCTGCGACTTTTCTGGCGGGGTTTGTTGTTTGCTCCAGAGTAAAACAACGC GATAAAAACAAAACTTATTT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MKLKLAALSIALLATGGAIAQANDTIAKVKASGVVTMGVRDSSGLSFTLGDGKYAGYHVDVCQRILARLEKTVGKKLEVK YLPVTSQNRIPLVQNGTVDIECGSTTNNATRQKDVAFAVTTFVEEVRIAVKADSGITSIAQLNGKSVATTTGTTSVQTLR KNERATGIDFKEVFGKDHSDSFLLLESGRADAFVMDGSILASNIANSKNPAGFKIVGEVLSVEPIAIMMRKDDPAFKKLS DDTIKDLIKSGELAKIYDKWLMQPVPPKNVRVGLPASDSTKAAWATPNDKPMEDYAKK
Sequences:
>Translated_298_residues MKLKLAALSIALLATGGAIAQANDTIAKVKASGVVTMGVRDSSGLSFTLGDGKYAGYHVDVCQRILARLEKTVGKKLEVK YLPVTSQNRIPLVQNGTVDIECGSTTNNATRQKDVAFAVTTFVEEVRIAVKADSGITSIAQLNGKSVATTTGTTSVQTLR KNERATGIDFKEVFGKDHSDSFLLLESGRADAFVMDGSILASNIANSKNPAGFKIVGEVLSVEPIAIMMRKDDPAFKKLS DDTIKDLIKSGELAKIYDKWLMQPVPPKNVRVGLPASDSTKAAWATPNDKPMEDYAKK >Mature_298_residues MKLKLAALSIALLATGGAIAQANDTIAKVKASGVVTMGVRDSSGLSFTLGDGKYAGYHVDVCQRILARLEKTVGKKLEVK YLPVTSQNRIPLVQNGTVDIECGSTTNNATRQKDVAFAVTTFVEEVRIAVKADSGITSIAQLNGKSVATTTGTTSVQTLR KNERATGIDFKEVFGKDHSDSFLLLESGRADAFVMDGSILASNIANSKNPAGFKIVGEVLSVEPIAIMMRKDDPAFKKLS DDTIKDLIKSGELAKIYDKWLMQPVPPKNVRVGLPASDSTKAAWATPNDKPMEDYAKK
Specific function: Part of the binding-protein-dependent transport system for glutamate and aspartate. Binds to both aspartate and glutamate [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1786876, Length=270, Percent_Identity=45.5555555555556, Blast_Score=229, Evalue=1e-61, Organism=Escherichia coli, GI1787031, Length=218, Percent_Identity=27.5229357798165, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1788228, Length=261, Percent_Identity=24.1379310344828, Blast_Score=61, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 31895; Mature: 31895
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKLAALSIALLATGGAIAQANDTIAKVKASGVVTMGVRDSSGLSFTLGDGKYAGYHVD CEEEHHHHEEEEEECCCCEEECCCCCEEEEECCEEEEEEECCCCCEEEECCCCCCCEEHH VCQRILARLEKTVGKKLEVKYLPVTSQNRIPLVQNGTVDIECGSTTNNATRQKDVAFAVT HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHH TFVEEVRIAVKADSGITSIAQLNGKSVATTTGTTSVQTLRKNERATGIDFKEVFGKDHSD HHHHHHEEEEECCCCCHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCHHHHHCCCCCC SFLLLESGRADAFVMDGSILASNIANSKNPAGFKIVGEVLSVEPIAIMMRKDDPAFKKLS CEEEEECCCCCEEEECCHHHHHHCCCCCCCCCCEEEHHHHCCCEEEEEEECCCHHHHHCC DDTIKDLIKSGELAKIYDKWLMQPVPPKNVRVGLPASDSTKAAWATPNDKPMEDYAKK HHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCCCCHHHHHCC >Mature Secondary Structure MKLKLAALSIALLATGGAIAQANDTIAKVKASGVVTMGVRDSSGLSFTLGDGKYAGYHVD CEEEHHHHEEEEEECCCCEEECCCCCEEEEECCEEEEEEECCCCCEEEECCCCCCCEEHH VCQRILARLEKTVGKKLEVKYLPVTSQNRIPLVQNGTVDIECGSTTNNATRQKDVAFAVT HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCEEECCEEEEEECCCCCCCCHHHHHHHHHH TFVEEVRIAVKADSGITSIAQLNGKSVATTTGTTSVQTLRKNERATGIDFKEVFGKDHSD HHHHHHEEEEECCCCCHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCHHHHHCCCCCC SFLLLESGRADAFVMDGSILASNIANSKNPAGFKIVGEVLSVEPIAIMMRKDDPAFKKLS CEEEEECCCCCEEEECCHHHHHHCCCCCCCCCCEEEHHHHCCCEEEEEEECCCHHHHHCC DDTIKDLIKSGELAKIYDKWLMQPVPPKNVRVGLPASDSTKAAWATPNDKPMEDYAKK HHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEECCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 10493123; 1091635; 1091636 [H]