Click here to switch to the map view.

The map label for this gene is qseD [H]

Identifier: 91789747

GI number: 91789747

Start: 4099724

End: 4100686

Strand: Reverse

Name: qseD [H]

Synonym: Bpro_3905

Alternate gene names: 91789747

Gene position: 4100686-4099724 (Counterclockwise)

Preceding gene: 91789748

Following gene: 91789746

Centisome position: 78.86

GC content: 65.11

Gene sequence:

>963_bases
ATGGAAACCAAATGGCTGGAAGATTTCGTCAGTCTTGCTGAAACCCGCAGTTTCAGCCGCTCGGCCCAACTGCGTCATGT
GACCCAGCCGGCCTTTTCGCGGCGCATCCAGGCGCTCGAAGCCTGGGCCGGCACCGACCTGGTTGACAGAAGCTCCTATC
CCACGCGCCTGACGCCGGCCGGCGAGACGCTGTACAGCCAGTCGCTGGAAATGCTGCAGGGTCTGCAGTCCACCCGCGCC
ATGCTGCGCGGCCATACCTCGGCCGGGCAGGATGTCATCGAGTTCGCTGTGCCGCATACGCTGGCCTTTACCTTCTTCCC
GGCGTGGGTCAGCAGCCTGCGCGAGAAGTTCGGGCCGATCAAGAGCCGGCTGATCGCGCTCAACGTGCATGACGCGGTGT
TGCGGCTGGTGGAGGGCAGTTGCGACCTGCTGATCGCCTACCACCATGACTCCCAGCCTTTCCAGCTGGACCCCGAGCGC
TATGAAATGGTGACGCTGGGCCAGGAAGTGCTCGCGCCGTTTGTGAAGGCCAATGCCGCCGGCGAGCCCGAGTTCAGCCT
GCCGGGGCGGGCCGGGCAGCCTTTGCCCTACCTGGGCTACGCGCCCGGCGCCTATCTGGGGCGGGTGGTCGACCTGATCC
TCAAGCAGTCCAGTACCGCGATTCACCTGGACCGGGTGTATGAAACCGACATGGCCGAGGGCCTGAAGGCCATGGCGCTC
GAGGGGCATGGCATCGCATTTTTGCCGCTCAGTGCCGTCAGGAAAGAACTCCGGGCCAAAAAGCTGGTCAGCGCGGGCGG
TAACCTGGAGATGACCATGGACGTCCGCGTCTACCGCGCACGGCCCACATCCAAAGAGGCGGCCAAAAGCCATGCACAGG
CCCTGTGGACCTATTTGCAGACCTCAACCGGCCCCCGGGACAAGGCGGCGGGCCGGGGCGGAATCCAGCCGCCGACCCGA
TAG

Upstream 100 bases:

>100_bases
TTGCTTCTCCTTGCAGGCAAGTGCCTGCTGCCTCGTCGCGCCTTGCCAGCGCACACCATGACGGCCCACTCGGGCGCGTC
CAACTGCGGTCGCTAGGTCT

Downstream 100 bases:

>100_bases
CCTGGGTGGACTAGGTAGCAACCCTTAGTGGTTATAAATAAAATGCATAGTTGTCCACTCAAACAGCATTGGTGTTTTTG
CACCCGCAAACTTACAGTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
METKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQALEAWAGTDLVDRSSYPTRLTPAGETLYSQSLEMLQGLQSTRA
MLRGHTSAGQDVIEFAVPHTLAFTFFPAWVSSLREKFGPIKSRLIALNVHDAVLRLVEGSCDLLIAYHHDSQPFQLDPER
YEMVTLGQEVLAPFVKANAAGEPEFSLPGRAGQPLPYLGYAPGAYLGRVVDLILKQSSTAIHLDRVYETDMAEGLKAMAL
EGHGIAFLPLSAVRKELRAKKLVSAGGNLEMTMDVRVYRARPTSKEAAKSHAQALWTYLQTSTGPRDKAAGRGGIQPPTR

Sequences:

>Translated_320_residues
METKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQALEAWAGTDLVDRSSYPTRLTPAGETLYSQSLEMLQGLQSTRA
MLRGHTSAGQDVIEFAVPHTLAFTFFPAWVSSLREKFGPIKSRLIALNVHDAVLRLVEGSCDLLIAYHHDSQPFQLDPER
YEMVTLGQEVLAPFVKANAAGEPEFSLPGRAGQPLPYLGYAPGAYLGRVVDLILKQSSTAIHLDRVYETDMAEGLKAMAL
EGHGIAFLPLSAVRKELRAKKLVSAGGNLEMTMDVRVYRARPTSKEAAKSHAQALWTYLQTSTGPRDKAAGRGGIQPPTR
>Mature_320_residues
METKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQALEAWAGTDLVDRSSYPTRLTPAGETLYSQSLEMLQGLQSTRA
MLRGHTSAGQDVIEFAVPHTLAFTFFPAWVSSLREKFGPIKSRLIALNVHDAVLRLVEGSCDLLIAYHHDSQPFQLDPER
YEMVTLGQEVLAPFVKANAAGEPEFSLPGRAGQPLPYLGYAPGAYLGRVVDLILKQSSTAIHLDRVYETDMAEGLKAMAL
EGHGIAFLPLSAVRKELRAKKLVSAGGNLEMTMDVRVYRARPTSKEAAKSHAQALWTYLQTSTGPRDKAAGRGGIQPPTR

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=287, Percent_Identity=34.1463414634146, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI145693105, Length=144, Percent_Identity=26.3888888888889, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35279; Mature: 35279

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQALEAWAGTDLVDRSSYPTRLTPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GETLYSQSLEMLQGLQSTRAMLRGHTSAGQDVIEFAVPHTLAFTFFPAWVSSLREKFGPI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
KSRLIALNVHDAVLRLVEGSCDLLIAYHHDSQPFQLDPERYEMVTLGQEVLAPFVKANAA
HHHEEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
GEPEFSLPGRAGQPLPYLGYAPGAYLGRVVDLILKQSSTAIHLDRVYETDMAEGLKAMAL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHEE
EGHGIAFLPLSAVRKELRAKKLVSAGGNLEMTMDVRVYRARPTSKEAAKSHAQALWTYLQ
CCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
TSTGPRDKAAGRGGIQPPTR
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METKWLEDFVSLAETRSFSRSAQLRHVTQPAFSRRIQALEAWAGTDLVDRSSYPTRLTPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
GETLYSQSLEMLQGLQSTRAMLRGHTSAGQDVIEFAVPHTLAFTFFPAWVSSLREKFGPI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
KSRLIALNVHDAVLRLVEGSCDLLIAYHHDSQPFQLDPERYEMVTLGQEVLAPFVKANAA
HHHEEEEEHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
GEPEFSLPGRAGQPLPYLGYAPGAYLGRVVDLILKQSSTAIHLDRVYETDMAEGLKAMAL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHEE
EGHGIAFLPLSAVRKELRAKKLVSAGGNLEMTMDVRVYRARPTSKEAAKSHAQALWTYLQ
CCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
TSTGPRDKAAGRGGIQPPTR
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]