| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91789650
Identifier: 91789650
GI number: 91789650
Start: 3993277
End: 3995139
Strand: Reverse
Name: 91789650
Synonym: Bpro_3806
Alternate gene names: NA
Gene position: 3995139-3993277 (Counterclockwise)
Preceding gene: 91789656
Following gene: 91789649
Centisome position: 76.83
GC content: 67.58
Gene sequence:
>1863_bases ATGGACCGCGCGGATTTCATTCACCTGGTGCGGCTGAGCGAACATGCCAGCGCGCAAGACAGCAAAGCCTATCGCCGCAG CGTGGCAGCCTTTGCCGCTTTGGGCTATGCCTGGGTGGTCGGCTGCCTGCTGCTTGCGGCTGCCATTCTGGCGTGGCTAG GCAGCTCGCTGCTGCGGGGCCAGTTCAAGGGCGCCTACATCTGGCTGCTGCTGGCCGCGGGCGGCCTGCTTTGGACCAGC CTGCGTGCCTTGTGGTGTCGGCTCGACGAGCCGCAAGGCGTGGCGCTGTCGCCCGCCGATGCGCCGGCCCTGTTCGAGGC GCTGGAGCGCATCCGCAGGAAGATCAAGGGCCCGACTATCCACCGCGTGCTGCTGGACGGGGACTTCAACGCCAGCATCA GCCAGTATCCGCGCTATGGCCTGTTCGGCGGTGCCGTCAACTACCTGACCATTGGCCTGCCCCTGCTGCTGGCAGTGGAC CGGCCGCGCTTTCTTGCCGTGCTGGCTCACGAGTACGGCCACTTGCGCGGCGATCACGGCCGCTTCGCGGCCTGGATTTA TCGCACCCGCCTGAGCTGGGCCAAGCTCAGCCACGGCCTGCGCAACGACGAGGGGCCGGTGGCCGCGGCCACCCAGGCCT TTCTGCGCTGGTATTTCCCGCGCTTTTCGGCCAAGACCTTTGCGCTGGCGCGCCAGGACGAGTACGAGGCTGACCGCATT TCCGGCAAGCTGCTGGGTAAAGAAGTCGCCGCCGCCGCGCTGACCGAAATCGCCATCAAGAGCGCCTGGCTGGGTCGCGA GTTCTGGTCGGGCCACTGGAGCGCCGCCGCAGCCAGCGCGCTGCCCGTCGGGCCGTATGCTGCCATGCGCAAACTGCTGG CCTTGGCGCCGCCAGACGACTTCGCCCGCGAGACCTTGCGGCAGACCCTGCGGCAGATCAGCGACGTCGACGACACGCAC CCGGTACTGCGCGACCGCCTGGAGGCGCTGGACGCGAGCAAGGGCTTGCCTGCCTGGTCGTCCAGGCCTGCGCTGGATCT GCTAGGCACCAGCGGCGCCAAATGGATCGCCCATTTCGACAAGCAATGGTGCAAGGACAACGCCACTGACTGGAAGCAGC ACCATGCCTACCTGGGCCGGGTGCGGGCCCGCGCCGACGCCCTGATGGCCAGCGCCGTGCGCAACAACGCCGGCGAAATG GTCGAGCTGGGCGACCTGCAAAGACGCCTCAATGCGCGCGCCGATGTGCGGAGCCACTATGAACGGGCCTTGCAGATCAC GCCTGGCCATGCCGGCGGCTTGCGCGGCCTGGTGCAATGCCTGCCGGCCGCTGAGCATGCCCGGCGCCTGGACTGCCTGG GCCAGCTGTTCGATCACAGTCTGCCCAGCCGCTGGTGGGCCTGCCGGGCGGCGGTGGCCGAACTGGAAAAGCCCGCTGCC GACGGCAGCCTCGATGACAAGGCGCTCAAGCTCTGGCGCGAGCGGCTCAAGCAGGCCGAGGAAGCCGAAGGCCGCGCCTG GGAGGAACTGACGAACACGCCGCTTTTCCAGTCGATCAGCCGCCACGACCTGAACGAGTTCGAAAGGGGCGAGATCCAGG CGGGTATGGCGCGTTGCAAACCCGTGGCCAGGGCCTGGTTGGTGCGCAAGAACTTGCGCGAGTTTCCCTACCGGCGCTGT TACCTCGTCTTCGTGGAACTGCCGGGCCTGGACGACGAAGAGCGGTATGACCTGTGCCGCGAGCTCGAGCGTTCACTGGA TCTGCCCGGACCGGCCCTGGCCCTGTGGGCTGGTTATTCGCCCACGCTGGGTGACATCGAGCGAGACGCCTTCGAACCCA TCTACATCCGCACCCCGGCCTGA
Upstream 100 bases:
>100_bases TGGCCCTTGTAGTGACGGTACAGGCCTGGCGGGGTTTCTATCAATGGGGGAAGGTCGTGGCTCATGGTTAAGATTGTCGC CAAAAGAGGGGAGGGGACTC
Downstream 100 bases:
>100_bases AGCTGCGCGGCCAGATGGGACAATAGGGCCATGCACCCTAAAGCCTTACTCGACAGTTGTTCCGAGCTTCTCAAGCAGGT CCTTAAATTTGAACACCCCG
Product: peptidase M48, Ste24p
Products: NA
Alternate protein names: M48 Family Peptidase; Peptidase Family; Zn-Dependent Protease With Chaperone Function; Zn-Dependent Protease With Chaperone Function-Like Protein
Number of amino acids: Translated: 620; Mature: 620
Protein sequence:
>620_residues MDRADFIHLVRLSEHASAQDSKAYRRSVAAFAALGYAWVVGCLLLAAAILAWLGSSLLRGQFKGAYIWLLLAAGGLLWTS LRALWCRLDEPQGVALSPADAPALFEALERIRRKIKGPTIHRVLLDGDFNASISQYPRYGLFGGAVNYLTIGLPLLLAVD RPRFLAVLAHEYGHLRGDHGRFAAWIYRTRLSWAKLSHGLRNDEGPVAAATQAFLRWYFPRFSAKTFALARQDEYEADRI SGKLLGKEVAAAALTEIAIKSAWLGREFWSGHWSAAAASALPVGPYAAMRKLLALAPPDDFARETLRQTLRQISDVDDTH PVLRDRLEALDASKGLPAWSSRPALDLLGTSGAKWIAHFDKQWCKDNATDWKQHHAYLGRVRARADALMASAVRNNAGEM VELGDLQRRLNARADVRSHYERALQITPGHAGGLRGLVQCLPAAEHARRLDCLGQLFDHSLPSRWWACRAAVAELEKPAA DGSLDDKALKLWRERLKQAEEAEGRAWEELTNTPLFQSISRHDLNEFERGEIQAGMARCKPVARAWLVRKNLREFPYRRC YLVFVELPGLDDEERYDLCRELERSLDLPGPALALWAGYSPTLGDIERDAFEPIYIRTPA
Sequences:
>Translated_620_residues MDRADFIHLVRLSEHASAQDSKAYRRSVAAFAALGYAWVVGCLLLAAAILAWLGSSLLRGQFKGAYIWLLLAAGGLLWTS LRALWCRLDEPQGVALSPADAPALFEALERIRRKIKGPTIHRVLLDGDFNASISQYPRYGLFGGAVNYLTIGLPLLLAVD RPRFLAVLAHEYGHLRGDHGRFAAWIYRTRLSWAKLSHGLRNDEGPVAAATQAFLRWYFPRFSAKTFALARQDEYEADRI SGKLLGKEVAAAALTEIAIKSAWLGREFWSGHWSAAAASALPVGPYAAMRKLLALAPPDDFARETLRQTLRQISDVDDTH PVLRDRLEALDASKGLPAWSSRPALDLLGTSGAKWIAHFDKQWCKDNATDWKQHHAYLGRVRARADALMASAVRNNAGEM VELGDLQRRLNARADVRSHYERALQITPGHAGGLRGLVQCLPAAEHARRLDCLGQLFDHSLPSRWWACRAAVAELEKPAA DGSLDDKALKLWRERLKQAEEAEGRAWEELTNTPLFQSISRHDLNEFERGEIQAGMARCKPVARAWLVRKNLREFPYRRC YLVFVELPGLDDEERYDLCRELERSLDLPGPALALWAGYSPTLGDIERDAFEPIYIRTPA >Mature_620_residues MDRADFIHLVRLSEHASAQDSKAYRRSVAAFAALGYAWVVGCLLLAAAILAWLGSSLLRGQFKGAYIWLLLAAGGLLWTS LRALWCRLDEPQGVALSPADAPALFEALERIRRKIKGPTIHRVLLDGDFNASISQYPRYGLFGGAVNYLTIGLPLLLAVD RPRFLAVLAHEYGHLRGDHGRFAAWIYRTRLSWAKLSHGLRNDEGPVAAATQAFLRWYFPRFSAKTFALARQDEYEADRI SGKLLGKEVAAAALTEIAIKSAWLGREFWSGHWSAAAASALPVGPYAAMRKLLALAPPDDFARETLRQTLRQISDVDDTH PVLRDRLEALDASKGLPAWSSRPALDLLGTSGAKWIAHFDKQWCKDNATDWKQHHAYLGRVRARADALMASAVRNNAGEM VELGDLQRRLNARADVRSHYERALQITPGHAGGLRGLVQCLPAAEHARRLDCLGQLFDHSLPSRWWACRAAVAELEKPAA DGSLDDKALKLWRERLKQAEEAEGRAWEELTNTPLFQSISRHDLNEFERGEIQAGMARCKPVARAWLVRKNLREFPYRRC YLVFVELPGLDDEERYDLCRELERSLDLPGPALALWAGYSPTLGDIERDAFEPIYIRTPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69376; Mature: 69376
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRADFIHLVRLSEHASAQDSKAYRRSVAAFAALGYAWVVGCLLLAAAILAWLGSSLLRG CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QFKGAYIWLLLAAGGLLWTSLRALWCRLDEPQGVALSPADAPALFEALERIRRKIKGPTI CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCE HRVLLDGDFNASISQYPRYGLFGGAVNYLTIGLPLLLAVDRPRFLAVLAHEYGHLRGDHG EEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC RFAAWIYRTRLSWAKLSHGLRNDEGPVAAATQAFLRWYFPRFSAKTFALARQDEYEADRI HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHH SGKLLGKEVAAAALTEIAIKSAWLGREFWSGHWSAAAASALPVGPYAAMRKLLALAPPDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHH FARETLRQTLRQISDVDDTHPVLRDRLEALDASKGLPAWSSRPALDLLGTSGAKWIAHFD HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHH KQWCKDNATDWKQHHAYLGRVRARADALMASAVRNNAGEMVELGDLQRRLNARADVRSHY HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ERALQITPGHAGGLRGLVQCLPAAEHARRLDCLGQLFDHSLPSRWWACRAAVAELEKPAA HHHEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC DGSLDDKALKLWRERLKQAEEAEGRAWEELTNTPLFQSISRHDLNEFERGEIQAGMARCK CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH PVARAWLVRKNLREFPYRRCYLVFVELPGLDDEERYDLCRELERSLDLPGPALALWAGYS HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCC PTLGDIERDAFEPIYIRTPA CCCCCCHHHCCCCEEEECCC >Mature Secondary Structure MDRADFIHLVRLSEHASAQDSKAYRRSVAAFAALGYAWVVGCLLLAAAILAWLGSSLLRG CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QFKGAYIWLLLAAGGLLWTSLRALWCRLDEPQGVALSPADAPALFEALERIRRKIKGPTI CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCE HRVLLDGDFNASISQYPRYGLFGGAVNYLTIGLPLLLAVDRPRFLAVLAHEYGHLRGDHG EEEEECCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC RFAAWIYRTRLSWAKLSHGLRNDEGPVAAATQAFLRWYFPRFSAKTFALARQDEYEADRI HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHH SGKLLGKEVAAAALTEIAIKSAWLGREFWSGHWSAAAASALPVGPYAAMRKLLALAPPDD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCCHH FARETLRQTLRQISDVDDTHPVLRDRLEALDASKGLPAWSSRPALDLLGTSGAKWIAHFD HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHH KQWCKDNATDWKQHHAYLGRVRARADALMASAVRNNAGEMVELGDLQRRLNARADVRSHY HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ERALQITPGHAGGLRGLVQCLPAAEHARRLDCLGQLFDHSLPSRWWACRAAVAELEKPAA HHHEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC DGSLDDKALKLWRERLKQAEEAEGRAWEELTNTPLFQSISRHDLNEFERGEIQAGMARCK CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH PVARAWLVRKNLREFPYRRCYLVFVELPGLDDEERYDLCRELERSLDLPGPALALWAGYS HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCC PTLGDIERDAFEPIYIRTPA CCCCCCHHHCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA