Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91789628

Identifier: 91789628

GI number: 91789628

Start: 3970514

End: 3972127

Strand: Direct

Name: 91789628

Synonym: Bpro_3783

Alternate gene names: NA

Gene position: 3970514-3972127 (Clockwise)

Preceding gene: 91789627

Following gene: 91789629

Centisome position: 76.35

GC content: 62.33

Gene sequence:

>1614_bases
ATGCCCAAACGACAAAGCAAACCCCCTCAGCCCGCGCAGCCGGTTCAAGCCACGGCGGCCACGAAGCCCGAGACGCAGGA
GATCGCGTCGATCGACCGCGACTACAACCGGCTCTTCTTCGGCAACACGCTCACCCACGACGACGACACCCTGCTGACCC
GTGGCGGCAGCAAGAGTTACCGCATCTATGACGATCTGGAACGCGACGCGCATTGCGGCGCGGTGCTGGACAAACGCAAG
ATGGCCGTCACCTCGCGCCCGTGGGTCATCAAGCCCGCCAGCGAAGCCCCGCTCGACGTGGCCGCTGCCGACCTGGTGCG
CCTTGCCTTTGGCAAGCTGCGGTTTAACGGCGTCTGCAAGCGAATGCTGGACGCAACGCTGAAGGGCTTTTCAGTCGGTG
AGGTGATGTGGGCTGTAGTCGATGGCATGGTGCTGCCTGTCAAGGTCATTAACCGCGACCAGCGCCGCTTCACATTCAAC
CTTCAAGGGCAGCTGCGCCTCAAGACCAAAGAAAACATGATGGACGGCATTGCGGTGCCAGAGCGCAAGTTCATCGTGCA
CACCTACGGCGGCAAGGATGGCACGCCCTACGGCTTGGGCCTCGGCTCTAAATTGTTCTGGCCGGTCTTCTTCAAAAAGC
AGGGTATTGGTTTCTGGCTCACGTTTGCCGACAAGTTTGGTAGCCCCACTGCCTTGGGGAAATACCCCAATGGCACTTTG
CAGCCCGAGCAAAACAAACTGCTCAGCGCCTTGCGCGCGATGAGCCAGGACGCAGGCGTCATCATCCCGGCCGGCATGGA
GGTCGAGCTGATTGAGGCGTCCCGCAGCGGCAGCGTTGACACCTATGAAAAGCTCATCCGCTACATGGACGAGCAGATCA
GCAAGGCCGTGCTGGGTGAAACCATGAGCACCACGGCCGCCAGCACCGGCCTTGGCAGCAACCAGGCGGGCGTGCACAAC
GACGTGCGCATTGAGCTGGCCCAGGATGACAACGACGACCTGTGCGAAACACTGGGCAGCACCCTGATTGCCTGGCTCGT
TTTTTACAACATGCCCGGCGCGGGCCTGCCCACCCTGGAGCGCGAGTTCGAAGAGCCCGAAGACCTGGCCCAGCGCGCAA
CGCGCGACAAGACGGTCGGCGAGCTGGGCTACGAGCCTACCGAGGAATACATCCTTGAGACCTATGGCGAGGGCTGGGTC
AAGAAGGCCGCTCCGGCCGCTCCGCCTGCCGGCATGTTCACGCGGCTGGGTGTTGATGGCCAGCAACCCGCGTTTTCTGA
GAGCATCGACAAGCTGCGCCGGGCCAGGCGCGCCAACCAGGACGTGCTGGAGCTGGCCGCAGATCAGCTCGCGGGCAATT
GGCGCAAGACCATGCAGCGCCGTGTCGAAGACCTGCAGGCGATGCTTGAGGAAACCGGCGACCTGGTGATGTTCCGCGAG
CGCATGGCCACGCTGCTTGAAACCGAACCACCCAAGGAACTGGTGGAGAGCATTGCCAACGCCAACTTCGCGGCGCAGCT
GCTGGGCCGTGGCCCTGCCGATGCCGAGTTTTCGGAGGCAGATTCCGGCTGGTTTAAAGGCCTCTGGAACCGCCTTTTTA
ACGGCGCAAAGTGA

Upstream 100 bases:

>100_bases
GCCGACTACGCCATGCGCCGCGAGGTGGTGCCGATTGAATTCCAGGCCCTCGGCGTAGCGCGCGCCAGCAGCAGCATGGC
CGATTACATGGGAGGCTGAT

Downstream 100 bases:

>100_bases
TGCAGCTTGAAGGCGCGTTCAACCTTGCGCCCAAGAAGGCGCTGGAGTTCTTTCGCAAGAAGGGCTACGCGGTCAGCTTC
GCCTGGCAGGACACCTTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 536

Protein sequence:

>537_residues
MPKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSYRIYDDLERDAHCGAVLDKRK
MAVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCKRMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFN
LQGQLRLKTKENMMDGIAVPERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTL
QPEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGETMSTTAASTGLGSNQAGVHN
DVRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLEREFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWV
KKAAPAAPPAGMFTRLGVDGQQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRE
RMATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK

Sequences:

>Translated_537_residues
MPKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSYRIYDDLERDAHCGAVLDKRK
MAVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCKRMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFN
LQGQLRLKTKENMMDGIAVPERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTL
QPEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGETMSTTAASTGLGSNQAGVHN
DVRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLEREFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWV
KKAAPAAPPAGMFTRLGVDGQQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRE
RMATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK
>Mature_536_residues
PKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSYRIYDDLERDAHCGAVLDKRKM
AVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCKRMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFNL
QGQLRLKTKENMMDGIAVPERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTLQ
PEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGETMSTTAASTGLGSNQAGVHND
VRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLEREFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWVK
KAAPAAPPAGMFTRLGVDGQQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRER
MATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK

Specific function: Unknown

COG id: COG4383

COG function: function code S; Mu-like prophage protein gp29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To phage Mu protein gp29 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009279 [H]

Pfam domain/function: PF06074 DUF935 [H]

EC number: NA

Molecular weight: Translated: 59459; Mature: 59328

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSY
CCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCEECCCCCCE
RIYDDLERDAHCGAVLDKRKMAVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCK
EEHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFNLQGQLRLKTKENMMDGIAVP
HHHHHHHCCCCHHHHHHHHHCCCEEEHHHHCCCCCEEEEEECCEEEECCHHHHHCCCCCC
ERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTL
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHEEECCCEEEEEEHHHCCCCCCCCCCCCCCC
QPEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGE
CCHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
TMSTTAASTGLGSNQAGVHNDVRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLE
HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
REFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWVKKAAPAAPPAGMFTRLGVDG
HHCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHCCCCCC
QQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRE
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RMATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK
HHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PKRQSKPPQPAQPVQATAATKPETQEIASIDRDYNRLFFGNTLTHDDDTLLTRGGSKSY
CCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCEECCCCCCE
RIYDDLERDAHCGAVLDKRKMAVTSRPWVIKPASEAPLDVAAADLVRLAFGKLRFNGVCK
EEHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RMLDATLKGFSVGEVMWAVVDGMVLPVKVINRDQRRFTFNLQGQLRLKTKENMMDGIAVP
HHHHHHHCCCCHHHHHHHHHCCCEEEHHHHCCCCCEEEEEECCEEEECCHHHHHCCCCCC
ERKFIVHTYGGKDGTPYGLGLGSKLFWPVFFKKQGIGFWLTFADKFGSPTALGKYPNGTL
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHEEECCCEEEEEEHHHCCCCCCCCCCCCCCC
QPEQNKLLSALRAMSQDAGVIIPAGMEVELIEASRSGSVDTYEKLIRYMDEQISKAVLGE
CCHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
TMSTTAASTGLGSNQAGVHNDVRIELAQDDNDDLCETLGSTLIAWLVFYNMPGAGLPTLE
HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
REFEEPEDLAQRATRDKTVGELGYEPTEEYILETYGEGWVKKAAPAAPPAGMFTRLGVDG
HHCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCHHHCCCCCC
QQPAFSESIDKLRRARRANQDVLELAADQLAGNWRKTMQRRVEDLQAMLEETGDLVMFRE
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RMATLLETEPPKELVESIANANFAAQLLGRGPADAEFSEADSGWFKGLWNRLFNGAK
HHHHHHCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]