| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789597
Identifier: 91789597
GI number: 91789597
Start: 3954222
End: 3956540
Strand: Direct
Name: 91789597
Synonym: Bpro_3752
Alternate gene names: NA
Gene position: 3954222-3956540 (Clockwise)
Preceding gene: 91789596
Following gene: 91789598
Centisome position: 76.04
GC content: 67.79
Gene sequence:
>2319_bases ATGAGCGCCGTCGCCAAAGACTGGCTCACCGCCAACGAGCTGCTCGGCCTGCCCAACATGCCGGCCGACAAGCGGGGAGT GCACCGCAAGGCGCTGGCCTCCGGCTGGCAATACCGCGAAGTCGCCGGCAACGGCGGCACCCGGCGCGAGTACCACGTGG CCAGCCTACCCGCCACCACGCGGGCCGCGCTGTCCTGGCACACCACGGCCGTGCTGGCCGGCAATGCGGGCCAGGCCCTG CAGGCCGCCGCCCAGGTCGGAACGGTGGAGGGCGCAAAAGCGGCGCTTAAAAGTAATCTTTCTACCCATGTGGCCGACAC CGCCAAGGCCGAGGGCCTGCGCAACCTGGCCGCCATGCCCGCCAACGAGCAGCGCCGCATGGACGCCCGGCTGCAGGTGC TGCAGGCCTTTGAAGCCTTCCAGCAGGCCAGCGGCGTCGCCATGACGGTGGCCGAGCACCAGTTCAGCAGCGCCTACCGG CTCGGCCATGTGGCCGTCGAGCCCTGGGTGCGCGCCCTGGTGGGCACCGTGGCCCCGGCCAGCATCCAGCGCTGGCGCCT GGCCGTGCGCAAGGGCGGCATCACCGCGCTGGCCGGCGCTTACGGCAACCGCAAAGGCGCTTCAAAGATAGACGCCCAGC CGCAGATGCGCGAGTTTGTGCAGGCCATGCTGGTGCGCTTTCCCGAGTCCCGCGCCACGCAAATCATGCACGGCCTGCGC ACCCGCCTGGCCGGCGACATTGCGGGCGGCAGCATCGAGCTGCCCAGCATGCGCAGCCTGGAGCGCTGGATGGAGACCTG GCGCGAGAAGAATGCCCAGACGCTCATGGCCCTGAGCAACCCCGACGCCTGGAAGAACAAGTTCATGGTCGCCTTCGGTT CGCAGAGCGAAGGCGTCACCGGCATCAACCAGCGCTGGGAGCTTGACAGCACCCCCGCCGACGTCATGCTCACTGACGGC CGCCACGCGGTGCTGGGCGTGGTTGACGTGTTCACCCGCCGCGCCAAGCTGCTGGTCAGCAAGACCAGCAAGTCCACGGC CGTGACCCAGGTGCTGCGCGATGCGCTGCTCGACTGGGGCGTGCCCGCCCTCATCAAGACCGACAACGGCAGCGACTACA AGAGCAAGCACGTCGGCTACGTCGCCGCCAACCTGGACATCAAGCAGGAGTTCTGCCCACCGTTCCAGCCCTGGCACAAG CCGCACATCGAGCGCTTCTTTGGCACGTTTGCGCGCGGCATGCTGGAGCTGCTGCCCAACTTCATCGGGCACAACGTGGC CGAGCGCAGCGCCATCGAGTCGCGCACCAGCTTTGCCGACCGGCTCATGAAGCGCGGCGAGGTGGTGCCCATCAACATGA GCGCCGCCGAGTTCCAGCTCTTTTGCAACCAGTGGGTTGACGGCATGTATATGCACGAGCCCCACGAGGGCCTGCAAAGC CGCACGCCCTTTGCGGTGGCCAGCGCCAACCGCGAGCAGGTGCGCATCATCAAAGACGAGCGCGTGCTCGATGTCCTGCT GGCTGAAGCCGCAGGCAGCCAGGGCGGCTACCTCACCGTCCAGAAAAAAGGCCTCAAGAGCGACGGTGCCTGGTTCATCG CTCCCGAGCTGGAGGCCTGGGTCGGCCAGCGCGTCATGGCCCGGCAGCTGCCTGACCTCGGCCAGATCGTGGTCTACGGC GGCGACAACCGGCTCATCTGCATTGCCGAATGCCCCGAGCGCACCGGCATGGACCGCAAGGAGGTTGCCGCCAAGGGCCG CGAGCTGCAGAAAAAACGCGTGCAGGAAGAGCGCGCCGCCCTCAAGGCCGCCGCCAAGCGCCAGAACGTCGACGGCATCG TGCACGAGATCCTGCTCGACCGCGCCCAGCAGGCCGGCAAGCTGGCCATGCTGCCCAAGCAGACGGTCGAGCACACCAGC ACCGGCCTGCAGGGTGCCGCCAACGCCCTGGCCGAGATCACCCGCGAGCCAGGCACCAGCGCCGAGCTGCTGCGCCTGGA GGGCGTCTCCAGCGCCTGGCAGCGCCTGCAGGCCGAGCAGGCCATCAACGACATCCCCGAGGGCAATGACAACGAGCTGG CCCGCCGCCGCGCCGAGGTGCAGCCGGTGTTCAACACCCCGCACGAGCGCGCCCAGTGGATTGAAAAGCGCAGCCGCGTG CGCGCCCTCACAGACGAAGAACGCGACTACATGGCGCGCTTCAAGAAAGACAACCTGGCGAGCTATCGCCGGATTGTGGA GCTGGTGGACGACATGACCAACGACATGTCATCCGCCCAAAAAGAAACCCCGGACGCATCCGCATCCGGGGCCAGTTAA
Upstream 100 bases:
>100_bases CACGCACCATGCTGCAGGCTTTCAAGCGCTACCAGGAGCGCACCCAGGGCCGCTGCCGCGCCTGCGGCCAGCCCACCCCC CAGACACAGGCGGCTACTGT
Downstream 100 bases:
>100_bases CCGCTGTGAGCCCAAGGCCTGAGAAACCAGACCACAGCAGAACCGAAAAAGAAAGAAAGATTGTATGCGTCAAAAACTAG CCGGTGTCAAGAACGTAGCC
Product: integrase catalytic subunit
Products: NA
Alternate protein names: Transposase; Transposase Protein A; Bacteriophage DNA Transposition Protein A; Integrase Catalytic Subunit; Prophage Mu DNA Transposition Protein A; Prophage; Prophage Mu Protein; Transposase-Like Mu; Bacteriophage DNA Transposase; Phage Transposase Protein A
Number of amino acids: Translated: 772; Mature: 771
Protein sequence:
>772_residues MSAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATTRAALSWHTTAVLAGNAGQAL QAAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMPANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYR LGHVAVEPWVRALVGTVAPASIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLR TRLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVTGINQRWELDSTPADVMLTDG RHAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWGVPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHK PHIERFFGTFARGMLELLPNFIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQS RTPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAWVGQRVMARQLPDLGQIVVYG GDNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAALKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTS TGLQGAANALAEITREPGTSAELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRV RALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS
Sequences:
>Translated_772_residues MSAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATTRAALSWHTTAVLAGNAGQAL QAAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMPANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYR LGHVAVEPWVRALVGTVAPASIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLR TRLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVTGINQRWELDSTPADVMLTDG RHAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWGVPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHK PHIERFFGTFARGMLELLPNFIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQS RTPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAWVGQRVMARQLPDLGQIVVYG GDNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAALKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTS TGLQGAANALAEITREPGTSAELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRV RALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS >Mature_771_residues SAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATTRAALSWHTTAVLAGNAGQALQ AAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMPANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYRL GHVAVEPWVRALVGTVAPASIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLRT RLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVTGINQRWELDSTPADVMLTDGR HAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWGVPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHKP HIERFFGTFARGMLELLPNFIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQSR TPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAWVGQRVMARQLPDLGQIVVYGG DNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAALKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTST GLQGAANALAEITREPGTSAELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRVR ALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS
Specific function: Unknown
COG id: COG2801
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85071; Mature: 84940
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATT CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCHH RAALSWHTTAVLAGNAGQALQAAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMP HHHHHEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC ANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYRLGHVAVEPWVRALVGTVAPA CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHCCHH SIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLR HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH TRLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVT HHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCEEEEECCCCCCCC GINQRWELDSTPADVMLTDGRHAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWG CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC VPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHKPHIERFFGTFARGMLELLPN CCEEEECCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQS HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCEEECCHHHHHC RTPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAW CCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCHHHH VGQRVMARQLPDLGQIVVYGGDNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAA HHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTSTGLQGAANALAEITREPGTS HHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCC AELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRV HHHHEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH RALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SAVAKDWLTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTRREYHVASLPATT CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEEEECCCCHH RAALSWHTTAVLAGNAGQALQAAAQVGTVEGAKAALKSNLSTHVADTAKAEGLRNLAAMP HHHHHEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC ANEQRRMDARLQVLQAFEAFQQASGVAMTVAEHQFSSAYRLGHVAVEPWVRALVGTVAPA CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHCCHH SIQRWRLAVRKGGITALAGAYGNRKGASKIDAQPQMREFVQAMLVRFPESRATQIMHGLR HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH TRLAGDIAGGSIELPSMRSLERWMETWREKNAQTLMALSNPDAWKNKFMVAFGSQSEGVT HHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCEEEEECCCCCCCC GINQRWELDSTPADVMLTDGRHAVLGVVDVFTRRAKLLVSKTSKSTAVTQVLRDALLDWG CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC VPALIKTDNGSDYKSKHVGYVAANLDIKQEFCPPFQPWHKPHIERFFGTFARGMLELLPN CCEEEECCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH FIGHNVAERSAIESRTSFADRLMKRGEVVPINMSAAEFQLFCNQWVDGMYMHEPHEGLQS HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCEEECCHHHHHC RTPFAVASANREQVRIIKDERVLDVLLAEAAGSQGGYLTVQKKGLKSDGAWFIAPELEAW CCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEECCCHHHH VGQRVMARQLPDLGQIVVYGGDNRLICIAECPERTGMDRKEVAAKGRELQKKRVQEERAA HHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LKAAAKRQNVDGIVHEILLDRAQQAGKLAMLPKQTVEHTSTGLQGAANALAEITREPGTS HHHHHHHCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCC AELLRLEGVSSAWQRLQAEQAINDIPEGNDNELARRRAEVQPVFNTPHERAQWIEKRSRV HHHHEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH RALTDEERDYMARFKKDNLASYRRIVELVDDMTNDMSSAQKETPDASASGAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA