Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is ycdJ [C]

Identifier: 91789537

GI number: 91789537

Start: 3902527

End: 3903423

Strand: Reverse

Name: ycdJ [C]

Synonym: Bpro_3690

Alternate gene names: 91789537

Gene position: 3903423-3902527 (Counterclockwise)

Preceding gene: 91789538

Following gene: 91789536

Centisome position: 75.06

GC content: 70.46

Gene sequence:

>897_bases
ATGAACGCCGTGCCCCGCACCGCTGACGATCTGCTGCAGGCGCCGCTCGCGCTGCTGGATAGTCGCTTTCCCCAGCGCAT
CGTGCCGCTGCCCTCGGGCGCGCAGGTGGCGCTGCGCGAATGCGGTGCGCCCGGCGAGGCGCCCACGGTTGTGCTGCTGC
ACGGCATCAGCTCCGGCGCTGCCTCATGGTCGCATGCGGCGCTGCTGGCCGGTGAGCAGGTGCATGTCATGGCGTGGGAT
GCCCCCGGCTATGGTGACTCCACCCCGCTTCGGGGCGATGCCCCCACGGACGCAGACTATGCGGCACGCCTGCATGAACT
GCTGCAGGCGATGGGCGTTCGCCGCTGCGTGCTGGTCGGCCATTCGCTGGGCGCGCTGATGGCTTGCGCCTACGCCCGCG
ATCTGGGTGCAGACCGCGTCACACGCGTGGTGCTCATCAGCCCGGCGGGCGGCTATGGCGCTGCCGCGCAGGCCACCACC
CGCGAGCGCGTGCGCAACGAGCGCCGCGATGCGCTGCAGATGCTGGGCGTGGCCGGCCTGGCAGAGCGCATCCCGCAGCG
CCTGCTCTCGCCGGCGGCAGACTCTGCGGCACGTGCCTGGGTGCAATGGAACACCGCCCGCCTGCAGCCCGAAGGCTACC
TGCAGGCCGTCGAGCTGCTGTGCGCCAGCGACCTGGGAACAAGCCAGGGTCTGGCCATGCCGGTGGAGGTTCACTGCGGC
GACGCCGACGTGGTCACACCGCCCGCTGCCTGCCGTGTCTGGGCAGACTTGTATGCTGCGCCCTTTGACTTGATCAAGGG
AGCCGGCCATGCCAGCCCTGTGGAGCAACCTGAAGCGGTCGCGCGCCTGATCACGCGCGCCGCGATGCAACCAAACGGAG
CCACGCACCATGAGTGA

Upstream 100 bases:

>100_bases
ACGCGCTGATGTGCGTGATGCTGGGCAACAAGAAGCCCATCACGCCCACCTATCCGCCCGAGCACCCGCTCGCCAAGATC
AAGCGCTGAGCGCATCTGCC

Downstream 100 bases:

>100_bases
CAACACCGCCGAAGAAAACGGCAACGACAAATACATCGTCCCCGCGCTGGAGCGCGGCCTGCGCCTGCTCGGAGAATTCA
GCCGCGACAGCCGCACGCTG

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Hydrolase; 3-Oxoadipate Enol-Lactonase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; 2-Hydroxymuconate-Semialdehyde Hydrolase; Alpha/Beta Superfamily Hydrolase/Acyltransferase

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGAASWSHAALLAGEQVHVMAWD
APGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVGHSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATT
RERVRNERRDALQMLGVAGLAERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG
DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE

Sequences:

>Translated_298_residues
MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGAASWSHAALLAGEQVHVMAWD
APGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVGHSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATT
RERVRNERRDALQMLGVAGLAERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG
DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE
>Mature_298_residues
MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGAASWSHAALLAGEQVHVMAWD
APGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVGHSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATT
RERVRNERRDALQMLGVAGLAERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG
DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31313; Mature: 31313

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC
ASWSHAALLAGEQVHVMAWDAPGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVG
CCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH
HSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATTRERVRNERRDALQMLGVAGL
HHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG
HHHHHHHHHCCCHHHHHHHHHEECHHEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNAVPRTADDLLQAPLALLDSRFPQRIVPLPSGAQVALRECGAPGEAPTVVLLHGISSGA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCC
ASWSHAALLAGEQVHVMAWDAPGYGDSTPLRGDAPTDADYAARLHELLQAMGVRRCVLVG
CCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHH
HSLGALMACAYARDLGADRVTRVVLISPAGGYGAAAQATTRERVRNERRDALQMLGVAGL
HHHHHHHHHHHHHHCCHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AERIPQRLLSPAADSAARAWVQWNTARLQPEGYLQAVELLCASDLGTSQGLAMPVEVHCG
HHHHHHHHHCCCHHHHHHHHHEECHHEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
DADVVTPPAACRVWADLYAAPFDLIKGAGHASPVEQPEAVARLITRAAMQPNGATHHE
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA