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The map label for this gene is rpoE [H]

Identifier: 91789493

GI number: 91789493

Start: 3844595

End: 3845230

Strand: Reverse

Name: rpoE [H]

Synonym: Bpro_3643

Alternate gene names: 91789493

Gene position: 3845230-3844595 (Counterclockwise)

Preceding gene: 91789494

Following gene: 91789492

Centisome position: 73.94

GC content: 56.92

Gene sequence:

>636_bases
ATGACTGCGGACGGGACACCCCTGCCATCCGAAAAAGCGGCTGATAGCGACGCCATGCTGGTCGAGCGCGCCGTGGCCGG
GGACCAAAAGGCCTTTGAGCTGCTGGTGATCAAGTACCAGCGCCGCATTCAGCGCCTGATAGGGCGCATGGTGCGCGATG
TGGATCTGGTGGAAGACATCGCCCAGGAAACGTTTATCCGGGCCTACCGCGCCCTGGCCCAGTTCCGGGGCGAGGCCCAG
TTCTACACCTGGCTCTACCGGATTGCGGTCAATACCGCCAAAAAAGCCCTGATGGATCTCAAGCGGGATCCCACCGTTTC
CGAAAATTCCTTTAAATCCGGAGAGGACGATGAAACTTCCCCGCTGGAAAACGAACTAACTAGCTCGGAAACGCCGGATG
CCGTATTGGCCAGCAAGGAAATTGCGGAAATGGTCAACGCAGCTATGGAAGCATTGCCGGAAGAGCTTCGTCAGGCCATC
ACTTTGCGCGAAATCGAAGGGTTGAGCTATGAAGAAATCTCTGAGGCCATGAATTGTCCCATTGGCACAGTGCGGTCCCG
TATTTTCAGGGCGCGTGAAGCGATCTCTGGGAAAGTCAAGCCCTTGCTGGAAAACCAGTCAGGCAAGCGCTGGTGA

Upstream 100 bases:

>100_bases
CAGGCGCTTCCCGCTCATTGGACGGGATGCCTGCAGAGCCGTTGCCGGCTGTGGCAGTATCGGGCCATGAGTTTCCTGTT
GATGCCACACGGATGAAGCC

Downstream 100 bases:

>100_bases
TGCTGGTAGTTATTGGCTGGTATCCATGTCAAGAGCCTTGTTGAATCACTATTGAATCAATGAATGAATAACTGAATGAA
TAACGCCCTGTCTTTCAGCC

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTADGTPLPSEKAADSDAMLVERAVAGDQKAFELLVIKYQRRIQRLIGRMVRDVDLVEDIAQETFIRAYRALAQFRGEAQ
FYTWLYRIAVNTAKKALMDLKRDPTVSENSFKSGEDDETSPLENELTSSETPDAVLASKEIAEMVNAAMEALPEELRQAI
TLREIEGLSYEEISEAMNCPIGTVRSRIFRAREAISGKVKPLLENQSGKRW

Sequences:

>Translated_211_residues
MTADGTPLPSEKAADSDAMLVERAVAGDQKAFELLVIKYQRRIQRLIGRMVRDVDLVEDIAQETFIRAYRALAQFRGEAQ
FYTWLYRIAVNTAKKALMDLKRDPTVSENSFKSGEDDETSPLENELTSSETPDAVLASKEIAEMVNAAMEALPEELRQAI
TLREIEGLSYEEISEAMNCPIGTVRSRIFRAREAISGKVKPLLENQSGKRW
>Mature_210_residues
TADGTPLPSEKAADSDAMLVERAVAGDQKAFELLVIKYQRRIQRLIGRMVRDVDLVEDIAQETFIRAYRALAQFRGEAQF
YTWLYRIAVNTAKKALMDLKRDPTVSENSFKSGEDDETSPLENELTSSETPDAVLASKEIAEMVNAAMEALPEELRQAIT
LREIEGLSYEEISEAMNCPIGTVRSRIFRAREAISGKVKPLLENQSGKRW

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=188, Percent_Identity=52.6595744680851, Blast_Score=194, Evalue=4e-51,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23731; Mature: 23600

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADGTPLPSEKAADSDAMLVERAVAGDQKAFELLVIKYQRRIQRLIGRMVRDVDLVEDI
CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQETFIRAYRALAQFRGEAQFYTWLYRIAVNTAKKALMDLKRDPTVSENSFKSGEDDETS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PLENELTSSETPDAVLASKEIAEMVNAAMEALPEELRQAITLREIEGLSYEEISEAMNCP
CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
IGTVRSRIFRAREAISGKVKPLLENQSGKRW
HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
TADGTPLPSEKAADSDAMLVERAVAGDQKAFELLVIKYQRRIQRLIGRMVRDVDLVEDI
CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQETFIRAYRALAQFRGEAQFYTWLYRIAVNTAKKALMDLKRDPTVSENSFKSGEDDETS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PLENELTSSETPDAVLASKEIAEMVNAAMEALPEELRQAITLREIEGLSYEEISEAMNCP
CHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
IGTVRSRIFRAREAISGKVKPLLENQSGKRW
HHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]