| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yeeO [C]
Identifier: 91789396
GI number: 91789396
Start: 3742794
End: 3744197
Strand: Reverse
Name: yeeO [C]
Synonym: Bpro_3542
Alternate gene names: 91789396
Gene position: 3744197-3742794 (Counterclockwise)
Preceding gene: 91789397
Following gene: 91789395
Centisome position: 72.0
GC content: 66.52
Gene sequence:
>1404_bases ATGACAGGTATTGACCAGCGTACGCGCATGTTGCTGGAAGCGCCGATCGGCCCCACGCTGCTGCGCCTTGCCGCACCCAA TGTGCTGGTGATGGTCGCGCAGGCCGCCGTGGGCCTGATCGAAACCTGGTTCGTCGGCAAGCTGGGCACCGATGCATTGG CCGGCATGGCGCTGGTGTTTCCCCTCGTGATGCTGATGCAGATGACCTCGGCCGGTGCGATGGGCGGGGGCATCGCCTCG GCGGTGGCGCGGGCGCTGGGCGCAAACCGGCGCGATGATGCCAATGCGCTGGTCCTGCATGCCATGGTGATCGCGCTGGG TTTTGGCCTGGCCTTCAGTCTGTGCCTGCTGCTGGGCGGCCGCTGGCTGTATGCGCAAATGGGCGGCAGCGGCGCCTCGC TGCAGGCGGCACTGGTCTATTCAAACTGGGTGTTCGCCGGCGCAGTGCTGGTGTGGCTGTTCAACTCGCTGGCGGCGGTC ATACGCGGTACCGGCAACATGGCGGTACCGGCCAACGTCACGGTAGCGGGCGTCCTGGCGCTGGTGCCGCTGTCGCCTTT GCTGATTTTTGGCTGGGGCCCGGTTCCGGCGCTGGGCATTGCGGGCGGCGCGATTGCGCTGCTGCTGTATTACCTGGCCG GCAGCATTGCACTGCTTGTCTATCTCGGGTCGAGCCGCAGCCTGCTCAAACCTTCGCTGAAAAACGTCCAGTTGCGCTGG CTGTTTTTTCGGGACATTCTGCGCATTGGCCTTCTTGGCTCCATTTCCACCGTTGCGACCAATCTCTCGATTGCGGTGGC GACATCGCTGGCGGGCGGATTTGGGCCTGCGGCTATTGCCGGTTACGGCACGGCGTCGCGCCTGGAGTATTTGCTGGTGC CCCTGGTTTTTGGTTTGGGTGCGCCGCTCGTGGCGATGGTGGGCACCTGCATGGGGGCGGGCCAGCATGAACGCGCATTG CGTGCGGCCTGGACAGGCGCGGCCATCGCCTTTGCGCTGACCGAATCGATTGGCCTGGTGGCGGCCGCATTTCCGCGGGC CTGGCTCTCGCTGTTCGGCAATGACCCCGCAATGCTTGAAGCCGGAACGCTTTACCTGCGCGCGGTCGGCCCGCTCTATG GATTTTTCGGCCTCGGCCTCGTGCTGTATTTCGCCTCGCAGGGTGCGGCCCGCCTGCTCTGGCCCGTGATGGGCAACCTG GCGCGCCTTGTGGTCGCCGCACTGGGCGGCTGGCTGGCCATTCGCTGGGGCGGGGGCCTGGTTCAGGTGTATGCCGCACA GGGCGCGGCGCTGGTGGTGTATGGCGTGGTGATTGCCGCTGCCATTGCCGGCGGGGCCTGGTTCGGCCGGGTCGGCTGGC CGTGCAGCACGGCAACGCTGCTGCGCCGTCTCCAGTCCGGGTGA
Upstream 100 bases:
>100_bases ACCAGCGCGGCGAGGTGCTGCAAATCTCTGTCAACAAGGTGGTCGTGCCCCGCCGGCCGACCTGATTCGTGGTCTGCTCG TGGTTTGAAGCGGGAACGGC
Downstream 100 bases:
>100_bases GCCTGCGGGCGTGAGAGGGTAGGGATGGTCAGGGCATAGGGCTGTCCCTGTCACGCCAGCCCGCTTCGGTGTGCCAGAAT CGTCTCAACCTAACCTGCAT
Product: MATE efflux family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MTGIDQRTRMLLEAPIGPTLLRLAAPNVLVMVAQAAVGLIETWFVGKLGTDALAGMALVFPLVMLMQMTSAGAMGGGIAS AVARALGANRRDDANALVLHAMVIALGFGLAFSLCLLLGGRWLYAQMGGSGASLQAALVYSNWVFAGAVLVWLFNSLAAV IRGTGNMAVPANVTVAGVLALVPLSPLLIFGWGPVPALGIAGGAIALLLYYLAGSIALLVYLGSSRSLLKPSLKNVQLRW LFFRDILRIGLLGSISTVATNLSIAVATSLAGGFGPAAIAGYGTASRLEYLLVPLVFGLGAPLVAMVGTCMGAGQHERAL RAAWTGAAIAFALTESIGLVAAAFPRAWLSLFGNDPAMLEAGTLYLRAVGPLYGFFGLGLVLYFASQGAARLLWPVMGNL ARLVVAALGGWLAIRWGGGLVQVYAAQGAALVVYGVVIAAAIAGGAWFGRVGWPCSTATLLRRLQSG
Sequences:
>Translated_467_residues MTGIDQRTRMLLEAPIGPTLLRLAAPNVLVMVAQAAVGLIETWFVGKLGTDALAGMALVFPLVMLMQMTSAGAMGGGIAS AVARALGANRRDDANALVLHAMVIALGFGLAFSLCLLLGGRWLYAQMGGSGASLQAALVYSNWVFAGAVLVWLFNSLAAV IRGTGNMAVPANVTVAGVLALVPLSPLLIFGWGPVPALGIAGGAIALLLYYLAGSIALLVYLGSSRSLLKPSLKNVQLRW LFFRDILRIGLLGSISTVATNLSIAVATSLAGGFGPAAIAGYGTASRLEYLLVPLVFGLGAPLVAMVGTCMGAGQHERAL RAAWTGAAIAFALTESIGLVAAAFPRAWLSLFGNDPAMLEAGTLYLRAVGPLYGFFGLGLVLYFASQGAARLLWPVMGNL ARLVVAALGGWLAIRWGGGLVQVYAAQGAALVVYGVVIAAAIAGGAWFGRVGWPCSTATLLRRLQSG >Mature_466_residues TGIDQRTRMLLEAPIGPTLLRLAAPNVLVMVAQAAVGLIETWFVGKLGTDALAGMALVFPLVMLMQMTSAGAMGGGIASA VARALGANRRDDANALVLHAMVIALGFGLAFSLCLLLGGRWLYAQMGGSGASLQAALVYSNWVFAGAVLVWLFNSLAAVI RGTGNMAVPANVTVAGVLALVPLSPLLIFGWGPVPALGIAGGAIALLLYYLAGSIALLVYLGSSRSLLKPSLKNVQLRWL FFRDILRIGLLGSISTVATNLSIAVATSLAGGFGPAAIAGYGTASRLEYLLVPLVFGLGAPLVAMVGTCMGAGQHERALR AAWTGAAIAFALTESIGLVAAAFPRAWLSLFGNDPAMLEAGTLYLRAVGPLYGFFGLGLVLYFASQGAARLLWPVMGNLA RLVVAALGGWLAIRWGGGLVQVYAAQGAALVVYGVVIAAAIAGGAWFGRVGWPCSTATLLRRLQSG
Specific function: Unknown
COG id: COG0534
COG function: function code V; Na+-driven multidrug efflux pump
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002528 - InterPro: IPR015522 [H]
Pfam domain/function: PF01554 MatE [H]
EC number: NA
Molecular weight: Translated: 47994; Mature: 47863
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGIDQRTRMLLEAPIGPTLLRLAAPNVLVMVAQAAVGLIETWFVGKLGTDALAGMALVF CCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH PLVMLMQMTSAGAMGGGIASAVARALGANRRDDANALVLHAMVIALGFGLAFSLCLLLGG HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC RWLYAQMGGSGASLQAALVYSNWVFAGAVLVWLFNSLAAVIRGTGNMAVPANVTVAGVLA CEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHH LVPLSPLLIFGWGPVPALGIAGGAIALLLYYLAGSIALLVYLGSSRSLLKPSLKNVQLRW HHHHCCEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHEEHEECCCCCHHCCHHHCHHHHH LFFRDILRIGLLGSISTVATNLSIAVATSLAGGFGPAAIAGYGTASRLEYLLVPLVFGLG HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHCC APLVAMVGTCMGAGQHERALRAAWTGAAIAFALTESIGLVAAAFPRAWLSLFGNDPAMLE CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE AGTLYLRAVGPLYGFFGLGLVLYFASQGAARLLWPVMGNLARLVVAALGGWLAIRWGGGL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCE VQVYAAQGAALVVYGVVIAAAIAGGAWFGRVGWPCSTATLLRRLQSG EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure TGIDQRTRMLLEAPIGPTLLRLAAPNVLVMVAQAAVGLIETWFVGKLGTDALAGMALVF CCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH PLVMLMQMTSAGAMGGGIASAVARALGANRRDDANALVLHAMVIALGFGLAFSLCLLLGG HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC RWLYAQMGGSGASLQAALVYSNWVFAGAVLVWLFNSLAAVIRGTGNMAVPANVTVAGVLA CEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHH LVPLSPLLIFGWGPVPALGIAGGAIALLLYYLAGSIALLVYLGSSRSLLKPSLKNVQLRW HHHHCCEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHEEHEECCCCCHHCCHHHCHHHHH LFFRDILRIGLLGSISTVATNLSIAVATSLAGGFGPAAIAGYGTASRLEYLLVPLVFGLG HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHCC APLVAMVGTCMGAGQHERALRAAWTGAAIAFALTESIGLVAAAFPRAWLSLFGNDPAMLE CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE AGTLYLRAVGPLYGFFGLGLVLYFASQGAARLLWPVMGNLARLVVAALGGWLAIRWGGGL HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCE VQVYAAQGAALVVYGVVIAAAIAGGAWFGRVGWPCSTATLLRRLQSG EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]