| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is silB [H]
Identifier: 91789346
GI number: 91789346
Start: 3692908
End: 3694545
Strand: Reverse
Name: silB [H]
Synonym: Bpro_3492
Alternate gene names: 91789346
Gene position: 3694545-3692908 (Counterclockwise)
Preceding gene: 91789347
Following gene: 91789345
Centisome position: 71.05
GC content: 64.41
Gene sequence:
>1638_bases ATGAACAAGAAATATCTCATTGCCGCGCTGCTTGCTGCGGGCGTGCTTGGCGCCGCCGGTTACGGTCTGTACACCCTGGG GGTGAAAAAGGGCGGCACCATGCCTGCCGCCAGTGCACCTGCCAACGCTGGCAGCCAAAGTGCTGCGCCCGCGGCCGCTC CCCAGAGCGTCGCCGATGGTGAAGAGGCGACCCGCCGCCATATCAGCGCAGGCCTCAAAGCGGGGGATACCGATCCGATT ACCGGCAGCAAGATTCTTTACTACCACGACCCCATGGTGCCAAGCAGCAAGTTCGACAAGCCGGCCAAGTCGCCTTTTAT GGACATGATGCTGGTGCCGGTCTATGCGAGTGGCGACGCCGATCAAGGCAAGGTCACCGTCAGCCCGCGCATCCAGCAGA ACCTGGGGGTGCGTACCGCGACGGTTACCGAGGGCACGCTGTCGCCCCAGGTTTCCGCTGTAGGCAGCATTGCCTACAAC GAGCGTGATCAGGCCACCGTCCAGGCCCGCGCCACCGGCTATGTGGAGCGGCTTCATGTGCGGGCCACGTTGGACCGGGT GGCGAAGGGTCAGCCGCTGGTAGATCTCTATGTGCCGGACTGGGTGGCTGCCCAGGAAGAGTTTTTGGCCATCAAACGCA TGCAAGGGAATGACCTGGCGTCACTGGTGGACGGCGCCCGCCAGCGTATGCGACAAGCTGGCATGAGCGATGAGCAAATT CGCCAGGTTGAAGCCAGCGGAAGGACGCAGGCTCGTATTACCGTGACGGCGCCGCTAGGCGGCGTGGTGGTGGAACTAAT GGCGCGCGAAGGCATGACGGTAATGGCCGGCACCACTCTGTTTCGCATCAATGGCCTGTCCACCGTCTGGGCTAACGCCG AGGTGCCTGAGAGCCAGTCGGCCCTGCTGCGCCCGGGCGCCAAGGTGCAGGCGCGCAGCCCGGCGGCGCCGGGCACCACC TTCAACGGCAAGGTGCAGGCGATCCTGCCCGAGGTCAACCCGGCCACACGCACGCTCAGGGCCAGGATGGAACTGGCCAA CCCGGGCGCACGTCTGGTGCCTGGCATGTTCGTATCCATGCAGTTCATGGACATGCGCGCCGAGAAGGCATTGCTGGTGC CCACCGAAGCCGTCATCCAGACGGGCAAGCGTACGGTCGTCATGCTGGCCGAGGAAAACGGACGCTTTCGGCCGGTTGAC GTGGAAGCCGGGATCGAGGCCGGCGGTCAAACTGAAATCAAGCGCGGGCTGCAGGCTGGCCAGCGCGTCGTGGTGTCTTC ACAGTTCCTGATCGATTCCGAAGCCAGCCTCAAAGGGGTCGAAGCCCGGCTCAACGAGGCGCCCAAGCCGGTCGCGGGCA ATACCGCGCCGCGGCACGAAGGAGAGGCGAAGATCGAGGCAGTTGGCAAGGACGCGATCACTCTGTCGCATGGGCCAATC CCCTCACTGAAGTGGGGGGCTATGACCATGGACTTCAAGTCACCGCCCCCACAAGCGCTACCGCGCAACCTGGAGGCCGG CGACCGGGTGAGCTTTGAGTTCTACATGGATGCGGACGGACTGCCCCAGTTGACCCGTGTCTCGCCTCTGGCTTCCGCGC CAGGCTCCACGCCAGCTTCCGCAGGGGGCAAGAAGTGA
Upstream 100 bases:
>100_bases TGCAGGCCCTGACCCTGGAGATGGAAACGGCGCGTTCCTGGGCGCAGCTCAACTTTCTGATCCCCGACCTCCACATTTCC GCACCCGCCAAGGACCAACC
Downstream 100 bases:
>100_bases TCGCCCGTCTGATTCGCTGGTCTATCGCCAACCGCTTCCTGGTGCTGCTGGCTACGCTCATGGTGAGTGCCTGGGGCGTG TACTCGGTGCTCAGGACGCC
Product: secretion protein HlyD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 545; Mature: 545
Protein sequence:
>545_residues MNKKYLIAALLAAGVLGAAGYGLYTLGVKKGGTMPAASAPANAGSQSAAPAAAPQSVADGEEATRRHISAGLKAGDTDPI TGSKILYYHDPMVPSSKFDKPAKSPFMDMMLVPVYASGDADQGKVTVSPRIQQNLGVRTATVTEGTLSPQVSAVGSIAYN ERDQATVQARATGYVERLHVRATLDRVAKGQPLVDLYVPDWVAAQEEFLAIKRMQGNDLASLVDGARQRMRQAGMSDEQI RQVEASGRTQARITVTAPLGGVVVELMAREGMTVMAGTTLFRINGLSTVWANAEVPESQSALLRPGAKVQARSPAAPGTT FNGKVQAILPEVNPATRTLRARMELANPGARLVPGMFVSMQFMDMRAEKALLVPTEAVIQTGKRTVVMLAEENGRFRPVD VEAGIEAGGQTEIKRGLQAGQRVVVSSQFLIDSEASLKGVEARLNEAPKPVAGNTAPRHEGEAKIEAVGKDAITLSHGPI PSLKWGAMTMDFKSPPPQALPRNLEAGDRVSFEFYMDADGLPQLTRVSPLASAPGSTPASAGGKK
Sequences:
>Translated_545_residues MNKKYLIAALLAAGVLGAAGYGLYTLGVKKGGTMPAASAPANAGSQSAAPAAAPQSVADGEEATRRHISAGLKAGDTDPI TGSKILYYHDPMVPSSKFDKPAKSPFMDMMLVPVYASGDADQGKVTVSPRIQQNLGVRTATVTEGTLSPQVSAVGSIAYN ERDQATVQARATGYVERLHVRATLDRVAKGQPLVDLYVPDWVAAQEEFLAIKRMQGNDLASLVDGARQRMRQAGMSDEQI RQVEASGRTQARITVTAPLGGVVVELMAREGMTVMAGTTLFRINGLSTVWANAEVPESQSALLRPGAKVQARSPAAPGTT FNGKVQAILPEVNPATRTLRARMELANPGARLVPGMFVSMQFMDMRAEKALLVPTEAVIQTGKRTVVMLAEENGRFRPVD VEAGIEAGGQTEIKRGLQAGQRVVVSSQFLIDSEASLKGVEARLNEAPKPVAGNTAPRHEGEAKIEAVGKDAITLSHGPI PSLKWGAMTMDFKSPPPQALPRNLEAGDRVSFEFYMDADGLPQLTRVSPLASAPGSTPASAGGKK >Mature_545_residues MNKKYLIAALLAAGVLGAAGYGLYTLGVKKGGTMPAASAPANAGSQSAAPAAAPQSVADGEEATRRHISAGLKAGDTDPI TGSKILYYHDPMVPSSKFDKPAKSPFMDMMLVPVYASGDADQGKVTVSPRIQQNLGVRTATVTEGTLSPQVSAVGSIAYN ERDQATVQARATGYVERLHVRATLDRVAKGQPLVDLYVPDWVAAQEEFLAIKRMQGNDLASLVDGARQRMRQAGMSDEQI RQVEASGRTQARITVTAPLGGVVVELMAREGMTVMAGTTLFRINGLSTVWANAEVPESQSALLRPGAKVQARSPAAPGTT FNGKVQAILPEVNPATRTLRARMELANPGARLVPGMFVSMQFMDMRAEKALLVPTEAVIQTGKRTVVMLAEENGRFRPVD VEAGIEAGGQTEIKRGLQAGQRVVVSSQFLIDSEASLKGVEARLNEAPKPVAGNTAPRHEGEAKIEAVGKDAITLSHGPI PSLKWGAMTMDFKSPPPQALPRNLEAGDRVSFEFYMDADGLPQLTRVSPLASAPGSTPASAGGKK
Specific function: Component of the sil cation efflux system that confers resistance to silver. May be part of a three-component cation/proton antiporter [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI1786787, Length=361, Percent_Identity=40.1662049861496, Blast_Score=276, Evalue=3e-75, Organism=Escherichia coli, GI87081796, Length=209, Percent_Identity=29.1866028708134, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57483; Mature: 57483
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKYLIAALLAAGVLGAAGYGLYTLGVKKGGTMPAASAPANAGSQSAAPAAAPQSVADG CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC EEATRRHISAGLKAGDTDPITGSKILYYHDPMVPSSKFDKPAKSPFMDMMLVPVYASGDA HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHEEEEEEEECCCC DQGKVTVSPRIQQNLGVRTATVTEGTLSPQVSAVGSIAYNERDQATVQARATGYVERLHV CCCEEEECCCHHHCCCCEEEEEECCCCCCCHHHHHHEEECCCCCCEEEHHHHHHHHHHHH RATLDRVAKGQPLVDLYVPDWVAAQEEFLAIKRMQGNDLASLVDGARQRMRQAGMSDEQI HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHH RQVEASGRTQARITVTAPLGGVVVELMAREGMTVMAGTTLFRINGLSTVWANAEVPESQS HHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCEEEEECCCEEEECCCCCCCCCH ALLRPGAKVQARSPAAPGTTFNGKVQAILPEVNPATRTLRARMELANPGARLVPGMFVSM HHHCCCCCEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHCCCHHEEH QFMDMRAEKALLVPTEAVIQTGKRTVVMLAEENGRFRPVDVEAGIEAGGQTEIKRGLQAG HHHHHCCCCEEECCCHHHHHCCCEEEEEEECCCCCEEEEEHHCCCCCCCHHHHHHHHHHC QRVVVSSQFLIDSEASLKGVEARLNEAPKPVAGNTAPRHEGEAKIEAVGKDAITLSHGPI CEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCC PSLKWGAMTMDFKSPPPQALPRNLEAGDRVSFEFYMDADGLPQLTRVSPLASAPGSTPAS CCCCCCEEEECCCCCCHHHCCCCCCCCCEEEEEEEECCCCCCCHHHCCCHHCCCCCCCCC AGGKK CCCCC >Mature Secondary Structure MNKKYLIAALLAAGVLGAAGYGLYTLGVKKGGTMPAASAPANAGSQSAAPAAAPQSVADG CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC EEATRRHISAGLKAGDTDPITGSKILYYHDPMVPSSKFDKPAKSPFMDMMLVPVYASGDA HHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHEEEEEEEECCCC DQGKVTVSPRIQQNLGVRTATVTEGTLSPQVSAVGSIAYNERDQATVQARATGYVERLHV CCCEEEECCCHHHCCCCEEEEEECCCCCCCHHHHHHEEECCCCCCEEEHHHHHHHHHHHH RATLDRVAKGQPLVDLYVPDWVAAQEEFLAIKRMQGNDLASLVDGARQRMRQAGMSDEQI HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHH RQVEASGRTQARITVTAPLGGVVVELMAREGMTVMAGTTLFRINGLSTVWANAEVPESQS HHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCEEEECCEEEEECCCEEEECCCCCCCCCH ALLRPGAKVQARSPAAPGTTFNGKVQAILPEVNPATRTLRARMELANPGARLVPGMFVSM HHHCCCCCEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHCCCHHEEH QFMDMRAEKALLVPTEAVIQTGKRTVVMLAEENGRFRPVDVEAGIEAGGQTEIKRGLQAG HHHHHCCCCEEECCCHHHHHCCCEEEEEEECCCCCEEEEEHHCCCCCCCHHHHHHHHHHC QRVVVSSQFLIDSEASLKGVEARLNEAPKPVAGNTAPRHEGEAKIEAVGKDAITLSHGPI CEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCC PSLKWGAMTMDFKSPPPQALPRNLEAGDRVSFEFYMDADGLPQLTRVSPLASAPGSTPAS CCCCCCEEEECCCCCCHHHCCCCCCCCCEEEEEEEECCCCCCCHHHCCCHHCCCCCCCCC AGGKK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9930866 [H]