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The map label for this gene is ydfH [C]

Identifier: 91789242

GI number: 91789242

Start: 3579585

End: 3580379

Strand: Reverse

Name: ydfH [C]

Synonym: Bpro_3386

Alternate gene names: 91789242

Gene position: 3580379-3579585 (Counterclockwise)

Preceding gene: 91789243

Following gene: 91789241

Centisome position: 68.85

GC content: 66.16

Gene sequence:

>795_bases
ATGAGTGCTATCAAAAATAGAGCTATTGACGTCGACACAGCAGGGGCTGAGGGCCAAATTGGCACTGAAAGTGCACAGGT
ACGGGCGCTGCTGAAGCTGCGCGAGCTGATCCTCTCGGGCGAACTGGCCGGCGGCACCCGCATTGCCGAACTGGCGATTG
TCGAGCGCCTCGGTGTGTCGCGCACGCCGATACGCGCGGCGCTGATGCGGCTGGAGCAGGAGGGCCTGCTCGAAGCGTTG
CCCAACGGCGGTTATGCGGTCCGGACCTTTTCCGAGCGCGACATTGCAGACGCCATTGAGCTGCGCGGCACGCTGGAAGG
CTTGCTGGTGCGGCTGGCGGCCGAGCGGGGCGCGCCGGCGGTGGTGATGGGCGAGGCCAAAGACTGCCTCAAGCAGGTGG
ATGCGGTGCTGGCCCAGCCCGCGCTGAGCGACGAGGCTTTTTCCGCCTATGTGGATTTGAACGAACGCTTTCACACGCTG
CTCTATGAGATGGCCGACAGCCCGGTCACCGTGAAACAGCTGGAGCGTGTGGTCAGCCTGCCGTTTGCGTCGGCTTCGGC
CTTTGTCGTGGTGCAGTCCAACTCGCCGCAGGCGCGCGACATGCTGGTGGTGGCGCAGGACCAGCACTGGCAGGTACTCG
ATGCCATTGAGCGCGGCGAGGGCACGCGCGCCGAAGCCCTGATGCGCGAGCACTCGCGCCTGGCGCAGCGCAACCTGCGC
CGTGCGCTGTCGGGCCAGGGCTCGGCCATGCCGGCCTCGATGAAAGCCATGAAGCTGATCCGCCGGCGCGGCTGA

Upstream 100 bases:

>100_bases
TGAACCTCTCTGTCATTGCGGGCCTGACCCGCAATCCATGCCACGCCTGCCGCGTTGGCCTGACAGCCTGGATGCCGGGT
CAAGCCCGGCATGACAGCGT

Downstream 100 bases:

>100_bases
CCACCTCTGACCACTTCTGACCACCTGATTCCCAGAACATGAAAAGTACCCAGACCTGGCAACCCGCCACCGTTGCCGCC
GTCCGCGACGCCACGCCCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSAIKNRAIDVDTAGAEGQIGTESAQVRALLKLRELILSGELAGGTRIAELAIVERLGVSRTPIRAALMRLEQEGLLEAL
PNGGYAVRTFSERDIADAIELRGTLEGLLVRLAAERGAPAVVMGEAKDCLKQVDAVLAQPALSDEAFSAYVDLNERFHTL
LYEMADSPVTVKQLERVVSLPFASASAFVVVQSNSPQARDMLVVAQDQHWQVLDAIERGEGTRAEALMREHSRLAQRNLR
RALSGQGSAMPASMKAMKLIRRRG

Sequences:

>Translated_264_residues
MSAIKNRAIDVDTAGAEGQIGTESAQVRALLKLRELILSGELAGGTRIAELAIVERLGVSRTPIRAALMRLEQEGLLEAL
PNGGYAVRTFSERDIADAIELRGTLEGLLVRLAAERGAPAVVMGEAKDCLKQVDAVLAQPALSDEAFSAYVDLNERFHTL
LYEMADSPVTVKQLERVVSLPFASASAFVVVQSNSPQARDMLVVAQDQHWQVLDAIERGEGTRAEALMREHSRLAQRNLR
RALSGQGSAMPASMKAMKLIRRRG
>Mature_263_residues
SAIKNRAIDVDTAGAEGQIGTESAQVRALLKLRELILSGELAGGTRIAELAIVERLGVSRTPIRAALMRLEQEGLLEALP
NGGYAVRTFSERDIADAIELRGTLEGLLVRLAAERGAPAVVMGEAKDCLKQVDAVLAQPALSDEAFSAYVDLNERFHTLL
YEMADSPVTVKQLERVVSLPFASASAFVVVQSNSPQARDMLVVAQDQHWQVLDAIERGEGTRAEALMREHSRLAQRNLRR
ALSGQGSAMPASMKAMKLIRRRG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28625; Mature: 28494

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIKNRAIDVDTAGAEGQIGTESAQVRALLKLRELILSGELAGGTRIAELAIVERLGVS
CCCHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
RTPIRAALMRLEQEGLLEALPNGGYAVRTFSERDIADAIELRGTLEGLLVRLAAERGAPA
CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VVMGEAKDCLKQVDAVLAQPALSDEAFSAYVDLNERFHTLLYEMADSPVTVKQLERVVSL
EEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
PFASASAFVVVQSNSPQARDMLVVAQDQHWQVLDAIERGEGTRAEALMREHSRLAQRNLR
CCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RALSGQGSAMPASMKAMKLIRRRG
HHHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SAIKNRAIDVDTAGAEGQIGTESAQVRALLKLRELILSGELAGGTRIAELAIVERLGVS
CCHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
RTPIRAALMRLEQEGLLEALPNGGYAVRTFSERDIADAIELRGTLEGLLVRLAAERGAPA
CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VVMGEAKDCLKQVDAVLAQPALSDEAFSAYVDLNERFHTLLYEMADSPVTVKQLERVVSL
EEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
PFASASAFVVVQSNSPQARDMLVVAQDQHWQVLDAIERGEGTRAEALMREHSRLAQRNLR
CCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
RALSGQGSAMPASMKAMKLIRRRG
HHHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]