Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91789240

Identifier: 91789240

GI number: 91789240

Start: 3577286

End: 3578458

Strand: Reverse

Name: 91789240

Synonym: Bpro_3384

Alternate gene names: NA

Gene position: 3578458-3577286 (Counterclockwise)

Preceding gene: 91789241

Following gene: 91789239

Centisome position: 68.81

GC content: 63.26

Gene sequence:

>1173_bases
ATGAACAAAAGAACCTTTATCCAGGCAGCCGTGATGGCCACCGTGGCGCTCGCCGGCGCGCAAGCTCTCGCGCAGGACAA
CAAGTTCAGGATAGGCCTGCTCCTGCCGATGACGGGGCCCTTCGCTTCCACGGGCCGGCAGATTGAAGCGGCAGCCAAGC
TCTACATGGCGCAGAACGGCGACACCGTCGCCGGCAAGAAGGTCGAGCTGATCATCAAGGACGACACCGGAACACCCGAC
GTCACCAAGCGCCTGGCGCAGGAAATGATCGTCAACGACAAGGTCAATGTGCTGGCCGGCTTCGGCCTGACGCCGCTGGC
ACTGGCCACGGCCCCGCTGGCCACGCAGTCCAAAACACCGATGGTGGTGATGGCGGCGGCCACCTCCAGCATCACCCAGG
CTTCGCCCTACATCGTGCGCACCAGCTTCACGCTGCCGCAGGTCACCATTGGGGTGGCCGACTGGGCACCCAGGAACGGC
ATCAAGAAGGTCGTGAGCCTGGTGTCGGACTATGGGCCCGGCATTGATGCCGAGCGCACCTTCAAGGACCGCTTCACCTT
CAACGGCGGCACGGTGGTGGACGCCGTGCGCGTGCCGCTGCGCAACCCCGACTTCGCGCCCTTCCTGCAGAAAGTGCGTG
ATGCCAAGCCCGATGCGGTGTTTGCCTTTGTGCCCTCCGGTGCCGGCTCGGCGCTGATGAAGCAGTTTGCCGAGCGCGGC
CTGGACAAGGCCGGCATCAAGCTGATCGCCACCGGCGACGTGACCGATGACGACATCCTGAACGACATGGGCGAGGTGGC
CGTGGGGGTGGTGACCTCGCACCACTATTCGGCGGCCCACAAATCACCGTTGAACCAGAAGTTTGTCGAAGCCTTCGGCA
AGGCCAACAAGGGACTGCGGCCCAATTTCATGGCCGTGGGCGGCTATGACGGCATGCGCGTGATCTACGAAGCCCTGAAA
ACCACCAAGGGCGCCGGCGGCGGCGAGGCCTTGCTTGCTGCCATGAAGGGCCAGGTGTTCGAGAGCCCGCGCGGCCCGAT
CTTTGTCGACGCGCAATCGCGTGACATTGTGCAAAACGTCTACATCCGCAAGGTCGAGAAAGTCGGCGGCCAGCTCTACA
ACGTCGAATTCGAAACCATCAAGGATGTGAAAGACCCGGGCAAGGCCAGGTAA

Upstream 100 bases:

>100_bases
GAGGGCCCTAACACTGCACTCCCGATACCGTTTTCGAATCCGCTTTTATCCCGTTTTGATCCCGTTCGATTGAGTTCGCA
TTAATTACCAGGAGACATCC

Downstream 100 bases:

>100_bases
AACGGGTATGTCATTGGGGTCTGACCCGCAATCCATCGCCGTGTACACGCCAGGATGGATGCCGGGTCAAGCCCGGCATG
ACAGCTATTTTGGTTGCTTG

Product: extracellular ligand-binding receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNGDTVAGKKVELIIKDDTGTPD
VTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTPMVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNG
IKKVVSLVSDYGPGIDAERTFKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG
LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLRPNFMAVGGYDGMRVIYEALK
TTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNVYIRKVEKVGGQLYNVEFETIKDVKDPGKAR

Sequences:

>Translated_390_residues
MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNGDTVAGKKVELIIKDDTGTPD
VTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTPMVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNG
IKKVVSLVSDYGPGIDAERTFKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG
LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLRPNFMAVGGYDGMRVIYEALK
TTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNVYIRKVEKVGGQLYNVEFETIKDVKDPGKAR
>Mature_390_residues
MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNGDTVAGKKVELIIKDDTGTPD
VTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTPMVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNG
IKKVVSLVSDYGPGIDAERTFKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG
LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLRPNFMAVGGYDGMRVIYEALK
TTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNVYIRKVEKVGGQLYNVEFETIKDVKDPGKAR

Specific function: Component of an amino-acid transport system (Potential) [H]

COG id: COG0683

COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the leucine-binding protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001828
- InterPro:   IPR000709 [H]

Pfam domain/function: PF01094 ANF_receptor [H]

EC number: NA

Molecular weight: Translated: 41580; Mature: 41580

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHEECCC
DTVAGKKVELIIKDDTGTPDVTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTP
CEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCCCCCCCCC
MVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNGIKKVVSLVSDYGPGIDAERT
EEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHH
FKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG
HHHHEEECCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCC
LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLR
CCHHCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCC
PNFMAVGGYDGMRVIYEALKTTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNV
CCEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
YIRKVEKVGGQLYNVEFETIKDVKDPGKAR
HHHHHHHHCCEEEEEEHHHHHCCCCCCCCC
>Mature Secondary Structure
MNKRTFIQAAVMATVALAGAQALAQDNKFRIGLLLPMTGPFASTGRQIEAAAKLYMAQNG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHEECCC
DTVAGKKVELIIKDDTGTPDVTKRLAQEMIVNDKVNVLAGFGLTPLALATAPLATQSKTP
CEECCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHCCCCCCCCCC
MVVMAAATSSITQASPYIVRTSFTLPQVTIGVADWAPRNGIKKVVSLVSDYGPGIDAERT
EEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHH
FKDRFTFNGGTVVDAVRVPLRNPDFAPFLQKVRDAKPDAVFAFVPSGAGSALMKQFAERG
HHHHEEECCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCC
LDKAGIKLIATGDVTDDDILNDMGEVAVGVVTSHHYSAAHKSPLNQKFVEAFGKANKGLR
CCHHCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCC
PNFMAVGGYDGMRVIYEALKTTKGAGGGEALLAAMKGQVFESPRGPIFVDAQSRDIVQNV
CCEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
YIRKVEKVGGQLYNVEFETIKDVKDPGKAR
HHHHHHHHCCEEEEEEHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA