| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ybjZ [C]
Identifier: 91789084
GI number: 91789084
Start: 3413792
End: 3416398
Strand: Direct
Name: ybjZ [C]
Synonym: Bpro_3224
Alternate gene names: 91789084
Gene position: 3413792-3416398 (Clockwise)
Preceding gene: 91789083
Following gene: 91789086
Centisome position: 65.65
GC content: 68.7
Gene sequence:
>2607_bases GTGTTCGCCCTTTTGCAAACCTTTTCCTGGAAGGAACTGCGCTACCACCCCTGGCGCAATGCCGCCGCCGTGGTCGCCGT CATGCTGGGCGTGGCCCTGGCGTTTTCAGTGCACCTGATCAATGCCTCGGCGCTCAGCGAGTTTTCCCAGGCGGTGCGCG CCGTCAACGGCCAGCCTGACCTGGAACTGCGGGCCGTGCAGGGCGGCTTTGACGAAGCGCTTTACCGCCAGGTGGCCAAC CATCCGCAGGTCGCGCTTGCCAGCCCGGTGCTGGAACTGGCCACCTACGCACTGGGCGGCAAGGGGGAGCGGCAGGCCCT GCGCATCGTTGGCGTCGATGCACTGGTGGTGGCCGGCATTGCCCCGGCGCTGATGCCCGTTCCGGCTTCGGATGCCGCGG TGACGGACCGCTTTGCGCTGTTTGCGCCGGACACGATTTTTCTCAATCCCGCCGCCCGCCAGGTTTTCAAGGCTGACCAG CTGCAACTGCAAAGTGGCCTGCAATGGAAAAGCGTCACCGTGGCTGGCAGCGTGAGTACGGGCGGAGGCCCGCTGGGCGT GATGGACATCGCTGCCGCACAGGATCTGTTTGGCAAAGGCGGCCAGCTGTCGCGCATTGACGTGCGCCTGAAAGCCGGCA GTGATGCGGCAAGCTTCGCCGCCTCGCTGCGGCTGCCACCCCACATCACCGCGACCGCGCCCGGCGATGCGGCAGAGCGC GTGAGCAACCTGTCGCGCGCCTACCGGGTCAACCTGACCGTACTGGCGCTGGTGGCCCTGTTCACCGGTGCGTTTCTGGT GTTCTCGGTGCTCTCGCTCAGCGTGGCCAAGCGCGCCCAGCAGTTCGCGCTGCTCGGCGTGCTCGGCCTGACAGGCCGCG AACGTTTGCAACTGGTACTGGCCGAATCGCTGTTGCTGGGCGGGGTGGGCAGTGCCGCGGGCATTGCGCTGGGCAGCGCG CTGGCCGCACTGGCGCTGCGTCTTCTGGGCGGTGACCTGGGCGGCGGCTACTTCGCCGGCGTGGCACCCAGCCTGCAATG GAACGGCTGGGCAGCCCTGGTCTATGGCGCGCTCGGCGTGGCGGCGGCCGGCGTGGGCGGCTGGTGGCCGGCGCGCGCCG CCCAGCAGCTGCCGCCGGCGCAAACCCTGAAGGGGCTGGGCCTGGCCGCCGGCACCGGCTCCGCACGCTGGCTCAGTATC GTTTTGATCGCTGCCAGCGCCCTTTTGGCATTGGCTCCGCCGGTATTTGGCATTCCGCTGGCGGCTTATCTGTCTGTCGG CGCGTTGCTGGTGGGCGGCATCACCGCCCTGCCCTGGCTGATTGCGCTGCTCTACGGCAGGCTCAGCCCCTGGGTGGCCC ACCGCCTGCTGCCGCTGCTGGCCGTGGAGCGCGCGCGCCGGGTGCGCGAAAGCGCGGCCGTGGCCGTCAGCGGCGTGGTG GCGTCGCTGAGCCTGGCCGTGGCGCTGACCGTGATGGTGGCCAGTTTCCGCGACTCGGTCACGCACTGGCTGGACGTGGT GCTGCCCGCCGATTTGTATGTGCGCACGGGTCTTGGTGGCCCGGCCAGCGACACCGCCTATTTCCCGCCCGGCTTTGTCG AGACGCTGGCCCGGCTGCCTGGCGTCGCGCGCGTGAGCGCACTGCGCACCCGGCAGCTGTTGCTGGACCCGGGCAAACCT GCCGTCACCCTGATTGCGCGCGCCATCGGCGACGCAGCCACCACGCTGCCGCTGGTGGGCAGCCCGCTGCCGGTGCCGCC CGGGCATGCCGGCATCTATGTCAGTGAAGCCATGGTGGACCTGTATGGCGCCCGGCCGGGCAGCGTTTTTCTTCCCCTTT CGCAGGCTTTTGGGGCCTATACCCAGGAAAACAGCGCGCCACCGGCTCCTGATTCAACGTCAGCGGCAAACGCACCTCGC CCGGCTGCGCCGGCTGCCACGCCGTTTTTTGTGGCCGGTGTCTGGCGTGATTACGCACGCCAGTTTGGCGCAATCGTGAT GGCGCAGCAGGACTTTGAGCGCCTGACCGGCGACCGGCGCGTCAATGACGTGGCGCTGTGGCTGAACGGTGATGTGGGCG AGGCCCAGGTGCAGCAGGCAATACGCCGGCTGGCCGAGCAGCAGCCGGGGGCGGGCGCTCTGCTGGAGCTGGCGTCCGTC AGCCAGCTTCGCGCCATCTCGCTCAGGATTTTTGACCGCAGTTTTGCAGTGACCTACTGGCTGCAGGCCGTGGCGATTGC CATCGGCCTGTTTGGCGTGGCCGCGAGCTTCAGCGCGCAGGTTCTGGCGCGCCGCAAGGAGTTTGGCCTGCTGGCACATC TGGGCTTGACCCGGCGACAAATCCTGACGGTGGTGGCTGGCGAGGGCGCGGCCTGGACGGCGATCGGCGCGCTGGCTGGG CTGGCGCTGGGCCTGGCGGTGTCCACCATACTGGTTCACGTGGTCAACCCGCAGAGCTTTCACTGGACCATGGACCTGAT GCTGCCCTGGCTTCGCCTGCTGGCCTTGTGCGCGGCGGTGGTAATTGCCGGCACACTGACCGCCTGGCTGGCGGGGCGAG CAGCCGCCGGCAAGGATGCCGTGCTGGCCGTCAAGGAAGACTGGTAG
Upstream 100 bases:
>100_bases TGACTGCGGCAATGGTGCGCCGGAGCGCGCGCCCCGCCACCGACCGTCCAGTCATCATCGGGCCATCACGCGGCGGCGCA TCCCTCACAATGCAGGAACC
Downstream 100 bases:
>100_bases CCCGCCGGGTAGTCCGTCCCTGGCAGCCCGGCGCGGCCGCCATGCTGCCCGTGCCCTCGCCGTCTAGTGGTGACTATCCG CCTTTTCAGGCGTATCCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter Permease Protein; Permease; ABC Transporter Membrane Protein; Abc Transporter Permease Protein; ABC-Type Transport System Permease Component
Number of amino acids: Translated: 868; Mature: 868
Protein sequence:
>868_residues MFALLQTFSWKELRYHPWRNAAAVVAVMLGVALAFSVHLINASALSEFSQAVRAVNGQPDLELRAVQGGFDEALYRQVAN HPQVALASPVLELATYALGGKGERQALRIVGVDALVVAGIAPALMPVPASDAAVTDRFALFAPDTIFLNPAARQVFKADQ LQLQSGLQWKSVTVAGSVSTGGGPLGVMDIAAAQDLFGKGGQLSRIDVRLKAGSDAASFAASLRLPPHITATAPGDAAER VSNLSRAYRVNLTVLALVALFTGAFLVFSVLSLSVAKRAQQFALLGVLGLTGRERLQLVLAESLLLGGVGSAAGIALGSA LAALALRLLGGDLGGGYFAGVAPSLQWNGWAALVYGALGVAAAGVGGWWPARAAQQLPPAQTLKGLGLAAGTGSARWLSI VLIAASALLALAPPVFGIPLAAYLSVGALLVGGITALPWLIALLYGRLSPWVAHRLLPLLAVERARRVRESAAVAVSGVV ASLSLAVALTVMVASFRDSVTHWLDVVLPADLYVRTGLGGPASDTAYFPPGFVETLARLPGVARVSALRTRQLLLDPGKP AVTLIARAIGDAATTLPLVGSPLPVPPGHAGIYVSEAMVDLYGARPGSVFLPLSQAFGAYTQENSAPPAPDSTSAANAPR PAAPAATPFFVAGVWRDYARQFGAIVMAQQDFERLTGDRRVNDVALWLNGDVGEAQVQQAIRRLAEQQPGAGALLELASV SQLRAISLRIFDRSFAVTYWLQAVAIAIGLFGVAASFSAQVLARRKEFGLLAHLGLTRRQILTVVAGEGAAWTAIGALAG LALGLAVSTILVHVVNPQSFHWTMDLMLPWLRLLALCAAVVIAGTLTAWLAGRAAAGKDAVLAVKEDW
Sequences:
>Translated_868_residues MFALLQTFSWKELRYHPWRNAAAVVAVMLGVALAFSVHLINASALSEFSQAVRAVNGQPDLELRAVQGGFDEALYRQVAN HPQVALASPVLELATYALGGKGERQALRIVGVDALVVAGIAPALMPVPASDAAVTDRFALFAPDTIFLNPAARQVFKADQ LQLQSGLQWKSVTVAGSVSTGGGPLGVMDIAAAQDLFGKGGQLSRIDVRLKAGSDAASFAASLRLPPHITATAPGDAAER VSNLSRAYRVNLTVLALVALFTGAFLVFSVLSLSVAKRAQQFALLGVLGLTGRERLQLVLAESLLLGGVGSAAGIALGSA LAALALRLLGGDLGGGYFAGVAPSLQWNGWAALVYGALGVAAAGVGGWWPARAAQQLPPAQTLKGLGLAAGTGSARWLSI VLIAASALLALAPPVFGIPLAAYLSVGALLVGGITALPWLIALLYGRLSPWVAHRLLPLLAVERARRVRESAAVAVSGVV ASLSLAVALTVMVASFRDSVTHWLDVVLPADLYVRTGLGGPASDTAYFPPGFVETLARLPGVARVSALRTRQLLLDPGKP AVTLIARAIGDAATTLPLVGSPLPVPPGHAGIYVSEAMVDLYGARPGSVFLPLSQAFGAYTQENSAPPAPDSTSAANAPR PAAPAATPFFVAGVWRDYARQFGAIVMAQQDFERLTGDRRVNDVALWLNGDVGEAQVQQAIRRLAEQQPGAGALLELASV SQLRAISLRIFDRSFAVTYWLQAVAIAIGLFGVAASFSAQVLARRKEFGLLAHLGLTRRQILTVVAGEGAAWTAIGALAG LALGLAVSTILVHVVNPQSFHWTMDLMLPWLRLLALCAAVVIAGTLTAWLAGRAAAGKDAVLAVKEDW >Mature_868_residues MFALLQTFSWKELRYHPWRNAAAVVAVMLGVALAFSVHLINASALSEFSQAVRAVNGQPDLELRAVQGGFDEALYRQVAN HPQVALASPVLELATYALGGKGERQALRIVGVDALVVAGIAPALMPVPASDAAVTDRFALFAPDTIFLNPAARQVFKADQ LQLQSGLQWKSVTVAGSVSTGGGPLGVMDIAAAQDLFGKGGQLSRIDVRLKAGSDAASFAASLRLPPHITATAPGDAAER VSNLSRAYRVNLTVLALVALFTGAFLVFSVLSLSVAKRAQQFALLGVLGLTGRERLQLVLAESLLLGGVGSAAGIALGSA LAALALRLLGGDLGGGYFAGVAPSLQWNGWAALVYGALGVAAAGVGGWWPARAAQQLPPAQTLKGLGLAAGTGSARWLSI VLIAASALLALAPPVFGIPLAAYLSVGALLVGGITALPWLIALLYGRLSPWVAHRLLPLLAVERARRVRESAAVAVSGVV ASLSLAVALTVMVASFRDSVTHWLDVVLPADLYVRTGLGGPASDTAYFPPGFVETLARLPGVARVSALRTRQLLLDPGKP AVTLIARAIGDAATTLPLVGSPLPVPPGHAGIYVSEAMVDLYGARPGSVFLPLSQAFGAYTQENSAPPAPDSTSAANAPR PAAPAATPFFVAGVWRDYARQFGAIVMAQQDFERLTGDRRVNDVALWLNGDVGEAQVQQAIRRLAEQQPGAGALLELASV SQLRAISLRIFDRSFAVTYWLQAVAIAIGLFGVAASFSAQVLARRKEFGLLAHLGLTRRQILTVVAGEGAAWTAIGALAG LALGLAVSTILVHVVNPQSFHWTMDLMLPWLRLLALCAAVVIAGTLTAWLAGRAAAGKDAVLAVKEDW
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90151; Mature: 90151
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFALLQTFSWKELRYHPWRNAAAVVAVMLGVALAFSVHLINASALSEFSQAVRAVNGQPD CCHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LELRAVQGGFDEALYRQVANHPQVALASPVLELATYALGGKGERQALRIVGVDALVVAGI CEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHH APALMPVPASDAAVTDRFALFAPDTIFLNPAARQVFKADQLQLQSGLQWKSVTVAGSVST HHHHCCCCCCCCHHHCCEEEECCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC GGGPLGVMDIAAAQDLFGKGGQLSRIDVRLKAGSDAASFAASLRLPPHITATAPGDAAER CCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCEEECCCCHHHHH VSNLSRAYRVNLTVLALVALFTGAFLVFSVLSLSVAKRAQQFALLGVLGLTGRERLQLVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AESLLLGGVGSAAGIALGSALAALALRLLGGDLGGGYFAGVAPSLQWNGWAALVYGALGV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHH AAAGVGGWWPARAAQQLPPAQTLKGLGLAAGTGSARWLSIVLIAASALLALAPPVFGIPL HHCCCCCCCHHHHHHHCCCHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH AAYLSVGALLVGGITALPWLIALLYGRLSPWVAHRLLPLLAVERARRVRESAAVAVSGVV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLSLAVALTVMVASFRDSVTHWLDVVLPADLYVRTGLGGPASDTAYFPPGFVETLARLP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCC GVARVSALRTRQLLLDPGKPAVTLIARAIGDAATTLPLVGSPLPVPPGHAGIYVSEAMVD CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCEEHHHHHHH LYGARPGSVFLPLSQAFGAYTQENSAPPAPDSTSAANAPRPAAPAATPFFVAGVWRDYAR HHCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH QFGAIVMAQQDFERLTGDRRVNDVALWLNGDVGEAQVQQAIRRLAEQQPGAGALLELASV HHHHEEEEHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH SQLRAISLRIFDRSFAVTYWLQAVAIAIGLFGVAASFSAQVLARRKEFGLLAHLGLTRRQ HHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH ILTVVAGEGAAWTAIGALAGLALGLAVSTILVHVVNPQSFHWTMDLMLPWLRLLALCAAV HEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHH VIAGTLTAWLAGRAAAGKDAVLAVKEDW HHHHHHHHHHHCCCCCCCCEEEEEECCC >Mature Secondary Structure MFALLQTFSWKELRYHPWRNAAAVVAVMLGVALAFSVHLINASALSEFSQAVRAVNGQPD CCHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LELRAVQGGFDEALYRQVANHPQVALASPVLELATYALGGKGERQALRIVGVDALVVAGI CEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHH APALMPVPASDAAVTDRFALFAPDTIFLNPAARQVFKADQLQLQSGLQWKSVTVAGSVST HHHHCCCCCCCCHHHCCEEEECCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC GGGPLGVMDIAAAQDLFGKGGQLSRIDVRLKAGSDAASFAASLRLPPHITATAPGDAAER CCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCEEECCCCHHHHH VSNLSRAYRVNLTVLALVALFTGAFLVFSVLSLSVAKRAQQFALLGVLGLTGRERLQLVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH AESLLLGGVGSAAGIALGSALAALALRLLGGDLGGGYFAGVAPSLQWNGWAALVYGALGV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHH AAAGVGGWWPARAAQQLPPAQTLKGLGLAAGTGSARWLSIVLIAASALLALAPPVFGIPL HHCCCCCCCHHHHHHHCCCHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH AAYLSVGALLVGGITALPWLIALLYGRLSPWVAHRLLPLLAVERARRVRESAAVAVSGVV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLSLAVALTVMVASFRDSVTHWLDVVLPADLYVRTGLGGPASDTAYFPPGFVETLARLP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCC GVARVSALRTRQLLLDPGKPAVTLIARAIGDAATTLPLVGSPLPVPPGHAGIYVSEAMVD CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCEEHHHHHHH LYGARPGSVFLPLSQAFGAYTQENSAPPAPDSTSAANAPRPAAPAATPFFVAGVWRDYAR HHCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH QFGAIVMAQQDFERLTGDRRVNDVALWLNGDVGEAQVQQAIRRLAEQQPGAGALLELASV HHHHEEEEHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH SQLRAISLRIFDRSFAVTYWLQAVAIAIGLFGVAASFSAQVLARRKEFGLLAHLGLTRRQ HHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH ILTVVAGEGAAWTAIGALAGLALGLAVSTILVHVVNPQSFHWTMDLMLPWLRLLALCAAV HEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHH VIAGTLTAWLAGRAAAGKDAVLAVKEDW HHHHHHHHHHHCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA