| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yycJ [H]
Identifier: 91789032
GI number: 91789032
Start: 3357969
End: 3358757
Strand: Direct
Name: yycJ [H]
Synonym: Bpro_3172
Alternate gene names: 91789032
Gene position: 3357969-3358757 (Clockwise)
Preceding gene: 91789031
Following gene: 91789033
Centisome position: 64.57
GC content: 62.86
Gene sequence:
>789_bases TTGCCTGCTGCACTGGTGCTGAGGTTCAAAAGCCTGGGCAGTGGCAGTTCGGGCAATGCCACACTGGTGGAGGCCTTGGG CCTGCTGCCCTTTCGGGTGCTCATTGACTGCGGGCTGGGGCTCAAGCACCTCGTGTACCGGCTGGGCCAGGCCGGGCTTC AACCAGAAGACATCGACGCAGTCTTCATTACCCACGAGCATGGCGACCACATTGGTTGCGCGCGTTCGCTGTCCCTGCGT TACCGCATCCCCGTCTGGATGAGCCACGGCACCCATGCCGCTACCGGCTCACCGGATTTTGACGGCCTGCTCCGCACGGC CAGAGATGGTGAAACCATTGAGCTTGGCGGACTTCAGCTCACCCCCTTCACCGTACCGCATGATGCCAGGGAGCCCTTGC AACTCACCTGCACCGATGGCTCGGCGAAGCTGGGAATTTTGACGGACCTGGGACATGCGACGGCACACGTCATCGCGCAC CTGAAGGCCTGCGATGCGCTGCTGCTGGAGTGCAACCACGACACCGAGATGCTGGCCCAATCGGCCTATCCCGCATTTCT GAAGCGACGGGTCGGCGGCCAGTACGGCCACCTTGCCAACGCCGCAGCGGCAGACATCGCCCGCGCCGTGCGGCACCCCG GCCTCAAGCATCTGGTGGCAGCCCATTTAAGCGCACAAAACAACCGGCCTGCGCTGGTTCAGGACGTAATGGCAGAGGCT TTGTCGTGCGCGCCAGAGGACATCATCGTTGCGAAACCCGATGACGGAAGCTGCTGGCTCCAGATCTGA
Upstream 100 bases:
>100_bases TCAATGCCCAGGGCGCGCCTGAATCGTCCGCCAATGCCAAGCGCATTGTTCAGGTGATTGCCGACGACCTGAAATAAGGC CGCGGTTTGCAGCTCCATCA
Downstream 100 bases:
>100_bases CAACGCAACATGACGAAGCAACGATTCCCGGGGTCTTGGCAAGCCTCCAGGAAATCATGAGCAAAAAAAAGCCGCCTTGC AGCGGCTTTTTTCAACTCGC
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MPAALVLRFKSLGSGSSGNATLVEALGLLPFRVLIDCGLGLKHLVYRLGQAGLQPEDIDAVFITHEHGDHIGCARSLSLR YRIPVWMSHGTHAATGSPDFDGLLRTARDGETIELGGLQLTPFTVPHDAREPLQLTCTDGSAKLGILTDLGHATAHVIAH LKACDALLLECNHDTEMLAQSAYPAFLKRRVGGQYGHLANAAAADIARAVRHPGLKHLVAAHLSAQNNRPALVQDVMAEA LSCAPEDIIVAKPDDGSCWLQI
Sequences:
>Translated_262_residues MPAALVLRFKSLGSGSSGNATLVEALGLLPFRVLIDCGLGLKHLVYRLGQAGLQPEDIDAVFITHEHGDHIGCARSLSLR YRIPVWMSHGTHAATGSPDFDGLLRTARDGETIELGGLQLTPFTVPHDAREPLQLTCTDGSAKLGILTDLGHATAHVIAH LKACDALLLECNHDTEMLAQSAYPAFLKRRVGGQYGHLANAAAADIARAVRHPGLKHLVAAHLSAQNNRPALVQDVMAEA LSCAPEDIIVAKPDDGSCWLQI >Mature_261_residues PAALVLRFKSLGSGSSGNATLVEALGLLPFRVLIDCGLGLKHLVYRLGQAGLQPEDIDAVFITHEHGDHIGCARSLSLRY RIPVWMSHGTHAATGSPDFDGLLRTARDGETIELGGLQLTPFTVPHDAREPLQLTCTDGSAKLGILTDLGHATAHVIAHL KACDALLLECNHDTEMLAQSAYPAFLKRRVGGQYGHLANAAAADIARAVRHPGLKHLVAAHLSAQNNRPALVQDVMAEAL SCAPEDIIVAKPDDGSCWLQI
Specific function: Unknown
COG id: COG1235
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 27897; Mature: 27766
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAALVLRFKSLGSGSSGNATLVEALGLLPFRVLIDCGLGLKHLVYRLGQAGLQPEDIDA CCHHEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE VFITHEHGDHIGCARSLSLRYRIPVWMSHGTHAATGSPDFDGLLRTARDGETIELGGLQL EEEEECCCCCCCHHHCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEECCEEE TPFTVPHDAREPLQLTCTDGSAKLGILTDLGHATAHVIAHLKACDALLLECNHDTEMLAQ ECEECCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHEEECCCCHHHHHH SAYPAFLKRRVGGQYGHLANAAAADIARAVRHPGLKHLVAAHLSAQNNRPALVQDVMAEA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHH LSCAPEDIIVAKPDDGSCWLQI HHCCCCCEEEECCCCCCEEEEC >Mature Secondary Structure PAALVLRFKSLGSGSSGNATLVEALGLLPFRVLIDCGLGLKHLVYRLGQAGLQPEDIDA CHHEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE VFITHEHGDHIGCARSLSLRYRIPVWMSHGTHAATGSPDFDGLLRTARDGETIELGGLQL EEEEECCCCCCCHHHCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEECCEEE TPFTVPHDAREPLQLTCTDGSAKLGILTDLGHATAHVIAHLKACDALLLECNHDTEMLAQ ECEECCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHEEECCCCHHHHHH SAYPAFLKRRVGGQYGHLANAAAADIARAVRHPGLKHLVAAHLSAQNNRPALVQDVMAEA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHH LSCAPEDIIVAKPDDGSCWLQI HHCCCCCEEEECCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]