| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789031
Identifier: 91789031
GI number: 91789031
Start: 3356794
End: 3357945
Strand: Direct
Name: 91789031
Synonym: Bpro_3171
Alternate gene names: NA
Gene position: 3356794-3357945 (Clockwise)
Preceding gene: 91789030
Following gene: 91789032
Centisome position: 64.55
GC content: 62.15
Gene sequence:
>1152_bases GTGAAGAACTTGCCAAAACGCCCTGCCTTTGCAACCGCCCAAACCGCGCTAACCATATCTGCACTGGTTGCCGTGGGTCT GCTTGCGGGCTGCTCCACCCTCAGGGACGTCATGGAAGGCGAGCGCATCGATTACAAATCGAGCGCGACCAAAGCGCCCT CGCTGGATATTCCTCCCGACCTGACCCAGCTCAACCGTGAAAGCCGCTATGTGGTGCCAGGCACAGCCGTGACCGCCAGC AGCTACCAGGTGGGCCAGGCCGCGCCCCAGACCGTACCGACAGCAGCCGCTGCAGTGGGTGACGTGCGGGTGGAACGCGC GGGCACCCAGCGCTGGCTGGTCATCAACCGGCCTGCCGACAAGCTCTGGGGACCGGTACGTGACTTCTGGCTGGAAAGCG GCTTTTTGCTGGCTCAAGATCAGGAAAACCTGGGCATCATGGAAACGGACTTTGCCGAAAATCGCGCGAAGCTGCCTCAG GACTTCATTCGCAGCGCACTGGGCAAAATTCTCGATGGCGCCTATTCCACCGGCGAACGCGACAAGTTCCGCACCCGGCT GGAGCGCCGGCCAGACGGCGGCACCGAGATTTTCATCAGCCATCGCGGCATGGTGGAGGTGATCACCGGCGCCAAGAGCG GAAATGCCGTGACAGGCGACAGCACAGTCTGGCAACCGCGCCCTGCCGACCCGGAACTGGAAGCTGAATTTCTGCGCCGC CTGATGGTGAAACTGGGCGTGGCGCAGGAGCAGTCCAAGACCCTCATTGCAGCAGGCGCCACGAAACAGACATCCCGCTC CACCGTCGTGAACAATCTTCCCGTCGTGCAGATCGACGAAGGCTTCGAGCGCGCCTGGCGTCGCGTGGGCCTGGCACTGG ACCGCACCGGCTTCACCGTGGAAGACCGCGACCGCAGCCAGGGCACCTATTTTGTACGCTATGTCGAACCCATCGCCAAC AAGAGCGAGCCCGGATTCTTCAGCAAACTGTTCAGTGGCTCTCCGGCTGCGCCAGCGCCACTGAAGTACCGCATTGCGGT CAAGAGCCTGGGCGAAAGCACCACGGTATCGGTGCTCAATGCCCAGGGCGCGCCTGAATCGTCCGCCAATGCCAAGCGCA TTGTTCAGGTGATTGCCGACGACCTGAAATAA
Upstream 100 bases:
>100_bases CGCTGCGGCTGCCGATGACGCCGCTTGACACCTCCAACGAAGCTGCCGTGGAAGGCGCCCTGCGCGCCTGCGGCCTGATC TGATTTTTAAGGGAACCCCC
Downstream 100 bases:
>100_bases GGCCGCGGTTTGCAGCTCCATCATTGCCTGCTGCACTGGTGCTGAGGTTCAAAAGCCTGGGCAGTGGCAGTTCGGGCAAT GCCACACTGGTGGAGGCCTT
Product: NlpBDapX lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPDLTQLNRESRYVVPGTAVTAS SYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPADKLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQ DFIRSALGKILDGAYSTGERDKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTVEDRDRSQGTYFVRYVEPIAN KSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLNAQGAPESSANAKRIVQVIADDLK
Sequences:
>Translated_383_residues MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPDLTQLNRESRYVVPGTAVTAS SYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPADKLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQ DFIRSALGKILDGAYSTGERDKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTVEDRDRSQGTYFVRYVEPIAN KSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLNAQGAPESSANAKRIVQVIADDLK >Mature_383_residues MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPDLTQLNRESRYVVPGTAVTAS SYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPADKLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQ DFIRSALGKILDGAYSTGERDKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTVEDRDRSQGTYFVRYVEPIAN KSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLNAQGAPESSANAKRIVQVIADDLK
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41621; Mature: 41621
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC LTQLNRESRYVVPGTAVTASSYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPAD HHHHCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCEEEEEECCHH KLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQDFIRSALGKILDGAYSTGER HHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCH DKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR HHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHHH LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTV HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCHHHHHHHHHCCEECCCCCEE EDRDRSQGTYFVRYVEPIANKSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLN CCCCCCCCEEEEEEECHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEEHHCCCCCEEEEEE AQGAPESSANAKRIVQVIADDLK CCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC LTQLNRESRYVVPGTAVTASSYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPAD HHHHCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCEEEEEECCHH KLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQDFIRSALGKILDGAYSTGER HHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCH DKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR HHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHHH LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTV HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCHHHHHHHHHCCEECCCCCEE EDRDRSQGTYFVRYVEPIANKSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLN CCCCCCCCEEEEEEECHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEEHHCCCCCEEEEEE AQGAPESSANAKRIVQVIADDLK CCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]