Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91789031

Identifier: 91789031

GI number: 91789031

Start: 3356794

End: 3357945

Strand: Direct

Name: 91789031

Synonym: Bpro_3171

Alternate gene names: NA

Gene position: 3356794-3357945 (Clockwise)

Preceding gene: 91789030

Following gene: 91789032

Centisome position: 64.55

GC content: 62.15

Gene sequence:

>1152_bases
GTGAAGAACTTGCCAAAACGCCCTGCCTTTGCAACCGCCCAAACCGCGCTAACCATATCTGCACTGGTTGCCGTGGGTCT
GCTTGCGGGCTGCTCCACCCTCAGGGACGTCATGGAAGGCGAGCGCATCGATTACAAATCGAGCGCGACCAAAGCGCCCT
CGCTGGATATTCCTCCCGACCTGACCCAGCTCAACCGTGAAAGCCGCTATGTGGTGCCAGGCACAGCCGTGACCGCCAGC
AGCTACCAGGTGGGCCAGGCCGCGCCCCAGACCGTACCGACAGCAGCCGCTGCAGTGGGTGACGTGCGGGTGGAACGCGC
GGGCACCCAGCGCTGGCTGGTCATCAACCGGCCTGCCGACAAGCTCTGGGGACCGGTACGTGACTTCTGGCTGGAAAGCG
GCTTTTTGCTGGCTCAAGATCAGGAAAACCTGGGCATCATGGAAACGGACTTTGCCGAAAATCGCGCGAAGCTGCCTCAG
GACTTCATTCGCAGCGCACTGGGCAAAATTCTCGATGGCGCCTATTCCACCGGCGAACGCGACAAGTTCCGCACCCGGCT
GGAGCGCCGGCCAGACGGCGGCACCGAGATTTTCATCAGCCATCGCGGCATGGTGGAGGTGATCACCGGCGCCAAGAGCG
GAAATGCCGTGACAGGCGACAGCACAGTCTGGCAACCGCGCCCTGCCGACCCGGAACTGGAAGCTGAATTTCTGCGCCGC
CTGATGGTGAAACTGGGCGTGGCGCAGGAGCAGTCCAAGACCCTCATTGCAGCAGGCGCCACGAAACAGACATCCCGCTC
CACCGTCGTGAACAATCTTCCCGTCGTGCAGATCGACGAAGGCTTCGAGCGCGCCTGGCGTCGCGTGGGCCTGGCACTGG
ACCGCACCGGCTTCACCGTGGAAGACCGCGACCGCAGCCAGGGCACCTATTTTGTACGCTATGTCGAACCCATCGCCAAC
AAGAGCGAGCCCGGATTCTTCAGCAAACTGTTCAGTGGCTCTCCGGCTGCGCCAGCGCCACTGAAGTACCGCATTGCGGT
CAAGAGCCTGGGCGAAAGCACCACGGTATCGGTGCTCAATGCCCAGGGCGCGCCTGAATCGTCCGCCAATGCCAAGCGCA
TTGTTCAGGTGATTGCCGACGACCTGAAATAA

Upstream 100 bases:

>100_bases
CGCTGCGGCTGCCGATGACGCCGCTTGACACCTCCAACGAAGCTGCCGTGGAAGGCGCCCTGCGCGCCTGCGGCCTGATC
TGATTTTTAAGGGAACCCCC

Downstream 100 bases:

>100_bases
GGCCGCGGTTTGCAGCTCCATCATTGCCTGCTGCACTGGTGCTGAGGTTCAAAAGCCTGGGCAGTGGCAGTTCGGGCAAT
GCCACACTGGTGGAGGCCTT

Product: NlpBDapX lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPDLTQLNRESRYVVPGTAVTAS
SYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPADKLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQ
DFIRSALGKILDGAYSTGERDKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR
LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTVEDRDRSQGTYFVRYVEPIAN
KSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLNAQGAPESSANAKRIVQVIADDLK

Sequences:

>Translated_383_residues
MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPDLTQLNRESRYVVPGTAVTAS
SYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPADKLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQ
DFIRSALGKILDGAYSTGERDKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR
LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTVEDRDRSQGTYFVRYVEPIAN
KSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLNAQGAPESSANAKRIVQVIADDLK
>Mature_383_residues
MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPDLTQLNRESRYVVPGTAVTAS
SYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPADKLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQ
DFIRSALGKILDGAYSTGERDKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR
LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTVEDRDRSQGTYFVRYVEPIAN
KSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLNAQGAPESSANAKRIVQVIADDLK

Specific function: Unknown

COG id: COG3317

COG function: function code M; Uncharacterized lipoprotein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41621; Mature: 41621

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
LTQLNRESRYVVPGTAVTASSYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPAD
HHHHCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCEEEEEECCHH
KLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQDFIRSALGKILDGAYSTGER
HHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
DKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR
HHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHHH
LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTV
HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCHHHHHHHHHCCEECCCCCEE
EDRDRSQGTYFVRYVEPIANKSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLN
CCCCCCCCEEEEEEECHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEEHHCCCCCEEEEEE
AQGAPESSANAKRIVQVIADDLK
CCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNLPKRPAFATAQTALTISALVAVGLLAGCSTLRDVMEGERIDYKSSATKAPSLDIPPD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
LTQLNRESRYVVPGTAVTASSYQVGQAAPQTVPTAAAAVGDVRVERAGTQRWLVINRPAD
HHHHCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCEEEEEECCHH
KLWGPVRDFWLESGFLLAQDQENLGIMETDFAENRAKLPQDFIRSALGKILDGAYSTGER
HHHHHHHHHHHCCCEEEEECCCCCCCEECCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCH
DKFRTRLERRPDGGTEIFISHRGMVEVITGAKSGNAVTGDSTVWQPRPADPELEAEFLRR
HHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHHH
LMVKLGVAQEQSKTLIAAGATKQTSRSTVVNNLPVVQIDEGFERAWRRVGLALDRTGFTV
HHHHHCCCCCCCCEEEEECCCCCCCHHHHHHCCCEEEECCHHHHHHHHHCCEECCCCCEE
EDRDRSQGTYFVRYVEPIANKSEPGFFSKLFSGSPAAPAPLKYRIAVKSLGESTTVSVLN
CCCCCCCCEEEEEEECHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEEHHCCCCCEEEEEE
AQGAPESSANAKRIVQVIADDLK
CCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]