| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yceA [C]
Identifier: 91788755
GI number: 91788755
Start: 3055640
End: 3056425
Strand: Direct
Name: yceA [C]
Synonym: Bpro_2894
Alternate gene names: 91788755
Gene position: 3055640-3056425 (Clockwise)
Preceding gene: 91788753
Following gene: 91788762
Centisome position: 58.76
GC content: 59.8
Gene sequence:
>786_bases ATGGACACCTTGCCTACAATGAGCGGCAACATGCAAATTCTGAATATTGCAGCCTATAAATTTGTCGCACTGGACCGCCT GCCCGAGCTGCAGGCGGCCGTGCTGACGGCCGCGCAATCGCGCGGCATCAAGGGTACCGTGCTGCTCGCGGAAGAAGGCA TCAACCTCTTTCTGGCCGCCGGCCGCGCCGACATTCATGATTTTTTGGCATGGCTGCGAACCGACGCCCGTTTTCATGAC CTGGAAACCAAGGAAAGCTGGTCAACGGCACAGCCCTTTCGCAAGTTGCTGGTCAAGGTCAAGCCTGAGATTATCCGCAT GAACCACCCGGCTATCCGGCCCTCTGCCGGTCGGGCACCAGCGGTTAACGCCACCACGCTCAAGCGTTGGCTGGACTGCG GGCACGACGACGAGGGGCGCCCCGTGGTGACTTTGGACACACGCAACGCCTTTGAGGTCGATGTGGGCACCTTCAGGAAT GCCATCGACTGGCGCATCGACAAGTTCACCGAGTTTCCGCAGGCCTTGCTGGATCACCGTGATGAGCTGCAGGGCAAGAC GGTGGTGAGTTTTTGCACGGGCGGGATCCGCTGTGAAAAAGCCGCGATTCTCATGCAGGAGGCCGGCGTCAACCATGTTT ACCAGCTCGACGGTGGCATCCTGAAATATTTTGAAGAGAGCGGTCACGCCCATTTCGAGGGCGAGTGTTTTGTGTTCGAC GAACGCCGGGCGCTGGATCCGGCGCTCACCCCCCGGGTGCATGTCGGCGCCTTGTCTGACACCTGA
Upstream 100 bases:
>100_bases TCGACGACTGAAAACTCGGTATGGATACGTAAATGGACAAACATGCGCTTCATTTTAGGGCTGGGGCCCACGCGCATTTT GCTGATTACCCGCATTGCCC
Downstream 100 bases:
>100_bases CACCGGCAAGGCATGGAAAGCTGTGGAGCTCACTCCCCCAAGGCGATAACCCATGGCTCCCTCACAACCCGCTCTTCGCA CCGTCACCCCGGGTTCTGAC
Product: rhodanese superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MDTLPTMSGNMQILNIAAYKFVALDRLPELQAAVLTAAQSRGIKGTVLLAEEGINLFLAAGRADIHDFLAWLRTDARFHD LETKESWSTAQPFRKLLVKVKPEIIRMNHPAIRPSAGRAPAVNATTLKRWLDCGHDDEGRPVVTLDTRNAFEVDVGTFRN AIDWRIDKFTEFPQALLDHRDELQGKTVVSFCTGGIRCEKAAILMQEAGVNHVYQLDGGILKYFEESGHAHFEGECFVFD ERRALDPALTPRVHVGALSDT
Sequences:
>Translated_261_residues MDTLPTMSGNMQILNIAAYKFVALDRLPELQAAVLTAAQSRGIKGTVLLAEEGINLFLAAGRADIHDFLAWLRTDARFHD LETKESWSTAQPFRKLLVKVKPEIIRMNHPAIRPSAGRAPAVNATTLKRWLDCGHDDEGRPVVTLDTRNAFEVDVGTFRN AIDWRIDKFTEFPQALLDHRDELQGKTVVSFCTGGIRCEKAAILMQEAGVNHVYQLDGGILKYFEESGHAHFEGECFVFD ERRALDPALTPRVHVGALSDT >Mature_261_residues MDTLPTMSGNMQILNIAAYKFVALDRLPELQAAVLTAAQSRGIKGTVLLAEEGINLFLAAGRADIHDFLAWLRTDARFHD LETKESWSTAQPFRKLLVKVKPEIIRMNHPAIRPSAGRAPAVNATTLKRWLDCGHDDEGRPVVTLDTRNAFEVDVGTFRN AIDWRIDKFTEFPQALLDHRDELQGKTVVSFCTGGIRCEKAAILMQEAGVNHVYQLDGGILKYFEESGHAHFEGECFVFD ERRALDPALTPRVHVGALSDT
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain [H]
Homologues:
Organism=Homo sapiens, GI111038120, Length=229, Percent_Identity=31.0043668122271, Blast_Score=96, Evalue=3e-20, Organism=Escherichia coli, GI1787294, Length=264, Percent_Identity=29.1666666666667, Blast_Score=85, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR020936 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: NA
Molecular weight: Translated: 29097; Mature: 29097
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTLPTMSGNMQILNIAAYKFVALDRLPELQAAVLTAAQSRGIKGTVLLAEEGINLFLAA CCCCCCCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEC GRADIHDFLAWLRTDARFHDLETKESWSTAQPFRKLLVKVKPEIIRMNHPAIRPSAGRAP CCCHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHCCHHEECCCCCCCCCCCCCC AVNATTLKRWLDCGHDDEGRPVVTLDTRNAFEVDVGTFRNAIDWRIDKFTEFPQALLDHR CCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCH DELQGKTVVSFCTGGIRCEKAAILMQEAGVNHVYQLDGGILKYFEESGHAHFEGECFVFD HHHCCCEEEEECCCCCEEHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEECCEEEEEE ERRALDPALTPRVHVGALSDT CCCCCCCCCCCCEEEEECCCC >Mature Secondary Structure MDTLPTMSGNMQILNIAAYKFVALDRLPELQAAVLTAAQSRGIKGTVLLAEEGINLFLAA CCCCCCCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEC GRADIHDFLAWLRTDARFHDLETKESWSTAQPFRKLLVKVKPEIIRMNHPAIRPSAGRAP CCCHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHCCHHEECCCCCCCCCCCCCC AVNATTLKRWLDCGHDDEGRPVVTLDTRNAFEVDVGTFRNAIDWRIDKFTEFPQALLDHR CCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCH DELQGKTVVSFCTGGIRCEKAAILMQEAGVNHVYQLDGGILKYFEESGHAHFEGECFVFD HHHCCCEEEEECCCCCEEHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEECCEEEEEE ERRALDPALTPRVHVGALSDT CCCCCCCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA