Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yedA [H]

Identifier: 91788672

GI number: 91788672

Start: 2953844

End: 2954776

Strand: Direct

Name: yedA [H]

Synonym: Bpro_2810

Alternate gene names: 91788672

Gene position: 2953844-2954776 (Clockwise)

Preceding gene: 91788670

Following gene: 91788673

Centisome position: 56.8

GC content: 63.24

Gene sequence:

>933_bases
ATGGCGTGGATGAGCTCCGCAATCTCCCTCCCTTCCCCGACCGCCCGGGCTGCACCGCTGCTGGTCCCCGCCCTGATCGC
CTGCTATGTGGTGTGGGGTTCCACCTACCTGGCGATCCGTTTCGCACTGGTGAGCTTCCCGCCTTTTTTCCAGATGGGCA
CCCGCTTCCTGGTGGCGGGCATGCTGGTCATGGCCTGGGTGATCATTCGCAAGCAACAGCTCCCTACCCTGCGCGAATGG
CGCAATGCGCTCGTGATCGGCACCTTGATGCTGGGCGGCGGCATGGGGCTCACCGCCAGTGCAGAAGTTCACATTGGCTC
CGGCCTGATCGCCACCTTCATTGCGGTGGTTCCCCTGATGGTTTGCGCATGGGGTCTGTTGTTGGGCCAACGCCCCAGCC
GGCTGGAACTGGCCGGCATGGCCGTGGGGCTGGCTGGCGTGCTGCTGCTGGTGAGAGGCGCCAGCTTTTCCGCGGCGCCC
GTGGGCCTGGCCTGCATCGCCGGTGCAACCCTGCTGTGGTCGCTGGGCTCCGTGTTGTCCACCGAACGACTGCCCCTGGC
CAGCGGCCCCGCGGGTTTCGCGAGTGAAATGTTGTGTGGCGGCGCGGTGTTAATGGCGATCTCTCTTGCACTGGGTGAGC
AGCACGAGGTCGCCAGCAACTGGCCTTTCCAGCCCGCAGCCCTGGTGGCCTGGCTGTACCTCGTGGTGTTCGGCTCGCTG
ATTGCGTTCAGCGCCTACATGTACTTGCTGGCCAATTCCTCCCCTGCTGTGGCCACCAGCTATGCCTTCGTGAACCCGCT
GATCGCGATTTTTCTGGGTGCGTTTTTTGCCGGCGAGCATGTCACCCGTGGCGAGTGGATCGCTTGCGGCGTGATTCTCA
CAGGCGTTTTTTTGATTTTCAGAGGTAAATCTGCAACAGGCGGGCGCAAATAA

Upstream 100 bases:

>100_bases
CGTCAGTTTCTGTCATCATGCTTTTCAAGCGTTAAATTAAAAGCGATCTCCGTTCTTCACCTTTAATTCTGCATGGCTTG
GCCGTTATTGGCAATTTACG

Downstream 100 bases:

>100_bases
AGTGCTTTTTCGCTATGAAACTGCGTTTTTCTCCAGTAGCATCCGCATTGCCGCAAGGAAGTAGTTATCCCTGTGGTGAT
TTATCAACTTCTAGAAGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MAWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAGMLVMAWVIIRKQQLPTLREW
RNALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLMVCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAP
VGLACIAGATLLWSLGSVLSTERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSL
IAFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIFRGKSATGGRK

Sequences:

>Translated_310_residues
MAWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAGMLVMAWVIIRKQQLPTLREW
RNALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLMVCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAP
VGLACIAGATLLWSLGSVLSTERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSL
IAFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIFRGKSATGGRK
>Mature_309_residues
AWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAGMLVMAWVIIRKQQLPTLREWR
NALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLMVCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAPV
GLACIAGATLLWSLGSVLSTERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSLI
AFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIFRGKSATGGRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1788269, Length=281, Percent_Identity=41.9928825622776, Blast_Score=166, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004779
- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32466; Mature: 32335

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MLVMAWVIIRKQQLPTLREWRNALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLM
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHH
VCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAPVGLACIAGATLLWSLGSVLS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
IAFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
RGKSATGGRK
CCCCCCCCCC
>Mature Secondary Structure 
AWMSSAISLPSPTARAAPLLVPALIACYVVWGSTYLAIRFALVSFPPFFQMGTRFLVAG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MLVMAWVIIRKQQLPTLREWRNALVIGTLMLGGGMGLTASAEVHIGSGLIATFIAVVPLM
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHH
VCAWGLLLGQRPSRLELAGMAVGLAGVLLLVRGASFSAAPVGLACIAGATLLWSLGSVLS
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
TERLPLASGPAGFASEMLCGGAVLMAISLALGEQHEVASNWPFQPAALVAWLYLVVFGSL
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
IAFSAYMYLLANSSPAVATSYAFVNPLIAIFLGAFFAGEHVTRGEWIACGVILTGVFLIF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
RGKSATGGRK
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]