| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91788520
Identifier: 91788520
GI number: 91788520
Start: 2794606
End: 2795646
Strand: Reverse
Name: 91788520
Synonym: Bpro_2658
Alternate gene names: NA
Gene position: 2795646-2794606 (Counterclockwise)
Preceding gene: 91788521
Following gene: 91788519
Centisome position: 53.76
GC content: 64.27
Gene sequence:
>1041_bases ATGAGCCCACCCCAAGACCCGCTACCTCCGAACGCTCCGCCCGCACCGGCACCGGATCCTGATTCGGTGGATCCCCTCCG GCCGGGGCAGGCGAGCGCGTCTTCACCGGCCCAGGTGGCGAGCCTGGAGTTCAAGGCCCGGATGCTGCTGCTCTTCATGC TGCTGCTGGTTTGCGGCGCGGCCATGTATGTGCTATACGCCCGTGGCGCCTTTGAAACAACCCAGCGGCTCGTGTTGATC TCGGACGACTCCGAGGGTGTGGTCGTCGGCATGGACCTGACCTTTTCAGGCTTTCCGATTGGTCGGGTCAGGCGTATTGA ACTCGCGGAAGACGGCAAGGCCCGTATCCTGGTTGATGTAGCCAGCAAGGACGCCCACTGGCTGCGCACCACCAGCGTCT TTACCCTGGTTCGCGGCATTGTGGGCGGCACCAACATTCGGGCCTACACCGGCCTGCTGAAAGACCCGCCGTTGCCGGAC GGCGCGGTGCGAACCGTGCTCCAGGGTGACGCCAGTGCGGAAGTCCCCAAGGTCATTGCCGCCGCCAAGGATCTGATCGA AAACCTCAACACCTTGACGGGAAGCACCGGCGCGGTGGGCGCCAGCATGGCCAACCTGCAGACACTGACCGAGCGGCTCA ATGGCCCCGGCGGCGCACTGACCGTGATGCTGGGCAGCGAAGCCGAGGCTAATAAACTGCTCGCCACGCTAGACCGCACC AACGCGCTGCTGACCAAGCTCGACGCCATTGCCGCCAAGACCGACACCCAGGTCTTTGGCGCCAACGGCGTGATGCCTGA AACCCGCGCCACCATTGTTCAACTCAACACCATGCTGGGCGAGGCCCGCACCAGCCTGAAGAAGGTGGATGCCCTGCTGC AAGACGCGCAGGCCGTCACATCCAACGCCAAAGAGGCCACGGCCGATCTGGGCGCCTTGCGGGCCGATGTGGAGGCCAGC TTGCGCAAGGTGGACAGCCTGGTCAACGAGATCAACCGCAAATGGCCGTTTGCCCGTGACGCGGAGATGAAACTGCCATG A
Upstream 100 bases:
>100_bases GCTGAAATGCGCGGACTGGTGCGCATGTTTGCCGTGATCCTGCTGATTGAAGTGACCTCACTGGTTGGCAACTACTATTG ACTCTGGAACCTGTATACCC
Downstream 100 bases:
>100_bases GTATCGCCATGAGCACCCCCCTGAAATTAACGGCGGCCGTTGGAGCGATTGCCGTCTTGTTGCTCAGCGCGTGCGCCAGC GGCCCGAAGCCGCCCGACTG
Product: ABC transporter periplasmic protein
Products: NA
Alternate protein names: Mammalian Cell Entry Related Domain Protein; Mce Related Protein; Mammalian Cell Entry Related Protein
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MSPPQDPLPPNAPPAPAPDPDSVDPLRPGQASASSPAQVASLEFKARMLLLFMLLLVCGAAMYVLYARGAFETTQRLVLI SDDSEGVVVGMDLTFSGFPIGRVRRIELAEDGKARILVDVASKDAHWLRTTSVFTLVRGIVGGTNIRAYTGLLKDPPLPD GAVRTVLQGDASAEVPKVIAAAKDLIENLNTLTGSTGAVGASMANLQTLTERLNGPGGALTVMLGSEAEANKLLATLDRT NALLTKLDAIAAKTDTQVFGANGVMPETRATIVQLNTMLGEARTSLKKVDALLQDAQAVTSNAKEATADLGALRADVEAS LRKVDSLVNEINRKWPFARDAEMKLP
Sequences:
>Translated_346_residues MSPPQDPLPPNAPPAPAPDPDSVDPLRPGQASASSPAQVASLEFKARMLLLFMLLLVCGAAMYVLYARGAFETTQRLVLI SDDSEGVVVGMDLTFSGFPIGRVRRIELAEDGKARILVDVASKDAHWLRTTSVFTLVRGIVGGTNIRAYTGLLKDPPLPD GAVRTVLQGDASAEVPKVIAAAKDLIENLNTLTGSTGAVGASMANLQTLTERLNGPGGALTVMLGSEAEANKLLATLDRT NALLTKLDAIAAKTDTQVFGANGVMPETRATIVQLNTMLGEARTSLKKVDALLQDAQAVTSNAKEATADLGALRADVEAS LRKVDSLVNEINRKWPFARDAEMKLP >Mature_345_residues SPPQDPLPPNAPPAPAPDPDSVDPLRPGQASASSPAQVASLEFKARMLLLFMLLLVCGAAMYVLYARGAFETTQRLVLIS DDSEGVVVGMDLTFSGFPIGRVRRIELAEDGKARILVDVASKDAHWLRTTSVFTLVRGIVGGTNIRAYTGLLKDPPLPDG AVRTVLQGDASAEVPKVIAAAKDLIENLNTLTGSTGAVGASMANLQTLTERLNGPGGALTVMLGSEAEANKLLATLDRTN ALLTKLDAIAAKTDTQVFGANGVMPETRATIVQLNTMLGEARTSLKKVDALLQDAQAVTSNAKEATADLGALRADVEASL RKVDSLVNEINRKWPFARDAEMKLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36504; Mature: 36373
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPPQDPLPPNAPPAPAPDPDSVDPLRPGQASASSPAQVASLEFKARMLLLFMLLLVCGA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AMYVLYARGAFETTQRLVLISDDSEGVVVGMDLTFSGFPIGRVRRIELAEDGKARILVDV HHHHHHHCCCHHCCCEEEEEECCCCCEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEE ASKDAHWLRTTSVFTLVRGIVGGTNIRAYTGLLKDPPLPDGAVRTVLQGDASAEVPKVIA CCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHH AAKDLIENLNTLTGSTGAVGASMANLQTLTERLNGPGGALTVMLGSEAEANKLLATLDRT HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH NALLTKLDAIAAKTDTQVFGANGVMPETRATIVQLNTMLGEARTSLKKVDALLQDAQAVT HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SNAKEATADLGALRADVEASLRKVDSLVNEINRKWPFARDAEMKLP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SPPQDPLPPNAPPAPAPDPDSVDPLRPGQASASSPAQVASLEFKARMLLLFMLLLVCGA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AMYVLYARGAFETTQRLVLISDDSEGVVVGMDLTFSGFPIGRVRRIELAEDGKARILVDV HHHHHHHCCCHHCCCEEEEEECCCCCEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEEE ASKDAHWLRTTSVFTLVRGIVGGTNIRAYTGLLKDPPLPDGAVRTVLQGDASAEVPKVIA CCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHH AAKDLIENLNTLTGSTGAVGASMANLQTLTERLNGPGGALTVMLGSEAEANKLLATLDRT HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH NALLTKLDAIAAKTDTQVFGANGVMPETRATIVQLNTMLGEARTSLKKVDALLQDAQAVT HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SNAKEATADLGALRADVEASLRKVDSLVNEINRKWPFARDAEMKLP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA