| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is bcsP31 [H]
Identifier: 91787880
GI number: 91787880
Start: 2072817
End: 2073833
Strand: Direct
Name: bcsP31 [H]
Synonym: Bpro_2004
Alternate gene names: 91787880
Gene position: 2072817-2073833 (Clockwise)
Preceding gene: 91787879
Following gene: 91787881
Centisome position: 39.86
GC content: 59.88
Gene sequence:
>1017_bases ATGAGCAAGAAGTTCGCATTGAGCGCATTGAGCGCCTTGAGCACATCGGGCGCCGCGAGTGTCGCAAGTATTGGAATTGC GATGATCGCTGCCCTGATGTCTGCGCCGGCATTTGCCCAGCAGAAGTTTGTCACCATAGGCACCGGTGGCGTGACGGGTG TGTATTACGCGGCGGGCGGCGCCATTTGCCGCCTGGTCAACAAGGACCGCGCCAAACACGGCATCCGCTGCTCGGTCGAG TCCACCGGGGGTTCGGTGTTCAACGTCAACACCATCAAGGCCGGCGAGCTTGATTTCGGTTTTTCGCAGTCGGACGTGCA GTACAACGCCGTGAAGGGTACAGGCCAGTACAAGGATGCTGGCGCCTACGGCGATTTGCGCGCCGTGTTTGCGGTACACC CCGAACCCTTCACCGTGGTCGCCCGCAAGGAGGCCAACATCACGAAGTTCGAGGACTTCAAGGGCAAACGTTTCAACGTC GGCAACCCTGGTTCGGGTACGCGTTCCTCGATGGAGGAATTGCTGGTAGGGATGGGCTGGAAGCTCGGCGATTTTTCGCT GGCCTCCGAGCTGAAGGCCGATGAGCACGGCCCGGCCCTGTGCGACGGCAAGATCGACGGGTTCTATTACGCGGTGGGCC ACCCCAGCGCCAATATCCAGGACCCGACCACTACCTGCGGCGCCAAGCTGGTGTCGCTCACCGGTCCGGTGATTGACAAG CTGGTGGCCGACAAGCCTTATTACGCCAAGGTCACGATTCCCGCCGGCCTGTACCCCAACAACCCGCAGCCCACCATGAC CTACGGTGTGCTGGCCACGGTCGTCACCTCCAGCAAGACACCGGCCGAAACCGTTTACCAGGTGACCAAGGCCTTGTTTG ACAACTTCGACGAGTTCAAAAAACTGCACCCGGCGCTGGCCAACCTCAACCCGCAGAACATGATCAAAGATGGCCTGAGC GCACCGCTGCATGAAGGTGCTGTGCGCTACTACAAGGAAAAAGGCTGGATCAAATAA
Upstream 100 bases:
>100_bases AGCGAAGCGGAACTGACCATGATGGTTGAGCGCCTGGGTTCGGCGATGGATGCCGCGATAGCGGCAGCGTAAAGATTTTT TTACAACCTGGAGAACTGAA
Downstream 100 bases:
>100_bases ATTCCTTCCGATGTCAACGAGCCGGGCCGGGAGCGTCATGTCTCCTGGCCTTTTTTAATAGAAGAATAAAGACGGTATGG AAGGGCGGTGATGGCGCAAC
Product: TRAP transporter solute receptor TAXI family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MSKKFALSALSALSTSGAASVASIGIAMIAALMSAPAFAQQKFVTIGTGGVTGVYYAAGGAICRLVNKDRAKHGIRCSVE STGGSVFNVNTIKAGELDFGFSQSDVQYNAVKGTGQYKDAGAYGDLRAVFAVHPEPFTVVARKEANITKFEDFKGKRFNV GNPGSGTRSSMEELLVGMGWKLGDFSLASELKADEHGPALCDGKIDGFYYAVGHPSANIQDPTTTCGAKLVSLTGPVIDK LVADKPYYAKVTIPAGLYPNNPQPTMTYGVLATVVTSSKTPAETVYQVTKALFDNFDEFKKLHPALANLNPQNMIKDGLS APLHEGAVRYYKEKGWIK
Sequences:
>Translated_338_residues MSKKFALSALSALSTSGAASVASIGIAMIAALMSAPAFAQQKFVTIGTGGVTGVYYAAGGAICRLVNKDRAKHGIRCSVE STGGSVFNVNTIKAGELDFGFSQSDVQYNAVKGTGQYKDAGAYGDLRAVFAVHPEPFTVVARKEANITKFEDFKGKRFNV GNPGSGTRSSMEELLVGMGWKLGDFSLASELKADEHGPALCDGKIDGFYYAVGHPSANIQDPTTTCGAKLVSLTGPVIDK LVADKPYYAKVTIPAGLYPNNPQPTMTYGVLATVVTSSKTPAETVYQVTKALFDNFDEFKKLHPALANLNPQNMIKDGLS APLHEGAVRYYKEKGWIK >Mature_337_residues SKKFALSALSALSTSGAASVASIGIAMIAALMSAPAFAQQKFVTIGTGGVTGVYYAAGGAICRLVNKDRAKHGIRCSVES TGGSVFNVNTIKAGELDFGFSQSDVQYNAVKGTGQYKDAGAYGDLRAVFAVHPEPFTVVARKEANITKFEDFKGKRFNVG NPGSGTRSSMEELLVGMGWKLGDFSLASELKADEHGPALCDGKIDGFYYAVGHPSANIQDPTTTCGAKLVSLTGPVIDKL VADKPYYAKVTIPAGLYPNNPQPTMTYGVLATVVTSSKTPAETVYQVTKALFDNFDEFKKLHPALANLNPQNMIKDGLSA PLHEGAVRYYKEKGWIK
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR011852 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 35859; Mature: 35728
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKFALSALSALSTSGAASVASIGIAMIAALMSAPAFAQQKFVTIGTGGVTGVYYAAGG CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCEEEEECCC AICRLVNKDRAKHGIRCSVESTGGSVFNVNTIKAGELDFGFSQSDVQYNAVKGTGQYKDA HHEEHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC GAYGDLRAVFAVHPEPFTVVARKEANITKFEDFKGKRFNVGNPGSGTRSSMEELLVGMGW CCCCCEEEEEEECCCCEEEEEECCCCCCCHHCCCCCEECCCCCCCCCHHHHHHHHHHCCC KLGDFSLASELKADEHGPALCDGKIDGFYYAVGHPSANIQDPTTTCGAKLVSLTGPVIDK CCCCHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH LVADKPYYAKVTIPAGLYPNNPQPTMTYGVLATVVTSSKTPAETVYQVTKALFDNFDEFK HHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHH KLHPALANLNPQNMIKDGLSAPLHEGAVRYYKEKGWIK HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure SKKFALSALSALSTSGAASVASIGIAMIAALMSAPAFAQQKFVTIGTGGVTGVYYAAGG CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCEEEEECCC AICRLVNKDRAKHGIRCSVESTGGSVFNVNTIKAGELDFGFSQSDVQYNAVKGTGQYKDA HHEEHHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCC GAYGDLRAVFAVHPEPFTVVARKEANITKFEDFKGKRFNVGNPGSGTRSSMEELLVGMGW CCCCCEEEEEEECCCCEEEEEECCCCCCCHHCCCCCEECCCCCCCCCHHHHHHHHHHCCC KLGDFSLASELKADEHGPALCDGKIDGFYYAVGHPSANIQDPTTTCGAKLVSLTGPVIDK CCCCHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH LVADKPYYAKVTIPAGLYPNNPQPTMTYGVLATVVTSSKTPAETVYQVTKALFDNFDEFK HHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHH KLHPALANLNPQNMIKDGLSAPLHEGAVRYYKEKGWIK HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3133283 [H]