Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91787881

Identifier: 91787881

GI number: 91787881

Start: 2073924

End: 2076578

Strand: Direct

Name: 91787881

Synonym: Bpro_2005

Alternate gene names: NA

Gene position: 2073924-2076578 (Clockwise)

Preceding gene: 91787880

Following gene: 91787885

Centisome position: 39.88

GC content: 63.95

Gene sequence:

>2655_bases
ATGGCGCAACTCGAAAAATACTCCCCCGAAAAACTCGATCAACTCGTCAAGGAAGTTGACCTGGGCGGGCGTGAGCCCGG
CGGCAAGATCGGGCTGGGTCTGGCCGCTCTTGCGGCGGCGTGGTCACTGTTCCAGGTCTGGTATGCCTCGCCGCTGCCCT
TTATCTTCGGCTTCGGCATTCTGAACGACACCGAGGCACGCGCCATCCATCTTGCATTTGCGATTTTTCTGGCCTTCTGC
GCCTTTCCCGCCTTCAACCATTCGTCGCGCACCATCATTCCCTGGTCGGACTGGTTGCTCGCGCTGGTGGGTGCTTTTTG
CGGTGCCTACCTTTTTCTGTTTTACAACCAGTTGGCGCTGCGGCCGGGCTCGCCGACGACGATGGACATCGTGATCGGCG
TGACCGGCGTAGCCGTCATGCTGGAGGCGACGCGCCGGGCCATGGGCTTTGGCATGCTGGTGACCACGGGCCTGTTCATG
GCCTTCGTGTTCCTCGGCCCCTACATGCCCGAGGTGTTGCAACACCGCGGTGCTTCGCTGTCGCGCTTCATCTCGCACAT
GTGGCTGACCACCGAGGGCGTCTACGGTGTGGCGCTGGGTGTGTCGGTGCAATTCATTTTCCTGTTTGTGTTGTTTGGCA
CCTTGCTGGACATTGCCGGCGCCGGCAATTACATGCTGCAGGTGTCGCTGGCCACCTTGGGTCACCTGCGCGGCGGCCCG
GCCAAGGTGGCGGTGGTGTCGTCGGCGCTCAATGGCATTGTGTCCGGCTCGTCGGTGTCCAACGTGGTGTCGGGCGGCAT
CTTCACCATCCCGCTGATGAAGCGCACCGGCTACTCGGGCGTCAAGGCCGGCGCCATCGAAGCGGCCTCCTCGATCAACG
GACAGATCATGCCGCCGGTGATGGGCGCGGCGGCTTTCCTGATGGTTGAGTACGTGGGGATTCCGTACGCTGAGATCATC
AAACACGCAGCGCTGCCGGCCGTCATTTCTTATGTGGCCTTGTTTTACATCGTGCATCTGGAGGCGCTGAAATATGACCT
GAAGCCGCTGGTGCGTGAGCGCCAGCCCACCTGGCGCCAGCGTGTGCTGGGCTGGGCGCTTGGCCTGTCGGGTACCGCAG
TGGCTGTCGCGGCTGTTTACTACGCTATCACCGCCGTGCAGGCGGTGGCGGGAGGTATGGCGGGCTGGGCCCTGGCTGTG
CTGGCCGGCGCGGCTTATATCGTGCTGATGGCGTATTCGTCGCGGTACCCGGGCATCGCCATCGACGACCCGCTGGCGCC
GGATATCAAGCTGCCGCTGCCCTGGCCGACGGTGCGCGCCGGCTTGCACTTTTTCATTCCCATCGTGGTGCTGCTGTGGT
GCCTGATGGTTGAAGAACTGTCACCCGGCCTGTCTGCCTTCTGGGCCACCGCCACCGTCATGGTGATGGTGGTGTTGCAG
CCTTTCATGCTGTCCGTCTTCCGCCCGAATGCCACAGCGGAGGTCGTGGCCTCCTCGGGCCAGGCAGAAGCGATGGCGTT
CGCGTTGCAGCGCCAGAACCATGTGGTCAGCGCCTTGCAGCGCGGCGTAGCCGACCTGTGGCGCGGCCTGGTGCTGGGCG
CGCGCAACATGATAGGCATCGGCGTGGCCTGCGCCAGTGCCGGCCTGATTGTCGGCGTCATCACGCTGACCGGCATGGGG
CTGATGATGACCGACTTTGTCGAGTTGGTGTCGGCCGGCAATGTGCTGGTTATGTTGCTGCTGACGGCGCTGATCTGCCT
GATCATCGGCGCCGGTGTGCCGACCACGGCCAACTACATTCTGGTGGCTACCCTGATGGCGCCGGTGATTGTGGAACTGG
GCGGACGCAGCGGGTTGGTGATTCCGCTGATCGCCGTGCACCTGTTCGTTTTTTACTTCGGCATCCTGGCCGACGTGACG
CCGCCGGTGGGGCTGGCGTCTTACGCCGCCGCGGCGATCTCCGGCGACGACCCGAATGCCACCGGCTGGCAGGCCACCTG
GTACAGCCTGCGCACCACCGTCCTGCCTTTCGTGTTCATCTTCAACCCGCAGATTTTGCTGATCGGCCTGGGCTCATGGG
TCGATGTGGTGCTGGTGTGTGTGACGGGCGTGGCTGCGTCATTGCTGTTTGCCGCGGCCACGATGAAATGGTTTCGCACC
CGCTGCACCTGGCCGGAAGTTGCCATGCTGCTGCTGGCGACCTTCCTGTTCTTCCGACCTGACTGGGTGATTAACCAGTT
CTCGCCCAAATACGTCAAGGCACCGGCCGCTGACATTTACAAGGTGGCTGATGGGCTGCATGCGGATGAATGGCTGGTGG
TGGGCATTGCCGGCCAGACGCTGGACGGCGAGCCACTCACCAAAACAGTGGCGTTGCCGATGGGCGAGGGCGCCACGGGC
AGGGAACGCCTGCGCGATGGCGGCGTGACGCTCAGCCAGCTGGGGCCCGACCTGGAGGTGGCGGCGGTCAAGTTTGGCAG
CCGCGCGAAAAAGCTGGGTGTGGAGCAGGGCTACAAGCTGGTCGAGCTGAAGCTGCCGAACCCGGCCCGGCCCTCATCGC
ATTGGGTGTTCATCCCGGCCGCGCTGCTGGGCTGGCTGGTGTGGTGGTTGCAGGGGCTGAGGCTGCGCCGGGGCAGGGGG
TTGGCACCCGCATGA

Upstream 100 bases:

>100_bases
GATCAAATAAATTCCTTCCGATGTCAACGAGCCGGGCCGGGAGCGTCATGTCTCCTGGCCTTTTTTAATAGAAGAATAAA
GACGGTATGGAAGGGCGGTG

Downstream 100 bases:

>100_bases
GCGCCGCCGGGCTGTCAGCCAAGTCAAGCGCAGGACTGGTCCGCGCCCCGCTGGCGCAAACAGCCACAAAACATGGCATC
AGGTCTTGTTGTCCGGGTTC

Product: TRAP transporter, 4TM/12TM fusion protein

Products: NA

Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Permease Protein; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; TRAP-Type Transporter Permease Component; Inner Membrane Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; Permease; TRAP-Type Transport System Permease; TRAP Transporter Permease; Integral Membrane Protein; TRAP-Type Transporter Fused Permease Components; Transcriptional Regulator DeoR Family; TRAP Transporter Large Permease; Trap Family Transporter; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP Transporter 4TM/12TM Fusion Family; 4TM/12TM TRAP Transporter; C4-Dicarboxylate Transporter; TRAP-Type Transport System; TRAP Transporter Membrane-Spanning Component; TRAP Type Transporter Protein

Number of amino acids: Translated: 884; Mature: 883

Protein sequence:

>884_residues
MAQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGILNDTEARAIHLAFAIFLAFC
AFPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLALRPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFM
AFVFLGPYMPEVLQHRGASLSRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGP
AKVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPVMGAAAFLMVEYVGIPYAEII
KHAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQRVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAV
LAGAAYIVLMAYSSRYPGIAIDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQ
PFMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGIGVACASAGLIVGVITLTGMG
LMMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYILVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVT
PPVGLASYAAAAISGDDPNATGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRT
RCTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQTLDGEPLTKTVALPMGEGATG
RERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKLVELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRG
LAPA

Sequences:

>Translated_884_residues
MAQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGILNDTEARAIHLAFAIFLAFC
AFPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLALRPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFM
AFVFLGPYMPEVLQHRGASLSRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGP
AKVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPVMGAAAFLMVEYVGIPYAEII
KHAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQRVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAV
LAGAAYIVLMAYSSRYPGIAIDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQ
PFMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGIGVACASAGLIVGVITLTGMG
LMMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYILVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVT
PPVGLASYAAAAISGDDPNATGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRT
RCTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQTLDGEPLTKTVALPMGEGATG
RERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKLVELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRG
LAPA
>Mature_883_residues
AQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGILNDTEARAIHLAFAIFLAFCA
FPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLALRPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFMA
FVFLGPYMPEVLQHRGASLSRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGPA
KVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPVMGAAAFLMVEYVGIPYAEIIK
HAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQRVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAVL
AGAAYIVLMAYSSRYPGIAIDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQP
FMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGIGVACASAGLIVGVITLTGMGL
MMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYILVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVTP
PVGLASYAAAAISGDDPNATGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRTR
CTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQTLDGEPLTKTVALPMGEGATGR
ERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKLVELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRGL
APA

Specific function: Unknown

COG id: COG4666

COG function: function code R; TRAP-type uncharacterized transport system, fused permease components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 94381; Mature: 94250

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGI
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
LNDTEARAIHLAFAIFLAFCAFPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLAL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHC
RPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFMAFVFLGPYMPEVLQHRGASL
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
SRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGP
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCC
AKVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPV
HHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCHH
MGAAAFLMVEYVGIPYAEIIKHAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQ
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAVLAGAAYIVLMAYSSRYPGIA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE
IDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQ
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
PFMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGI
HHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
GVACASAGLIVGVITLTGMGLMMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
LVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVTPPVGLASYAAAAISGDDPNA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
TGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRT
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQT
HCCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHCCCHHHHHHHHCCCCCCCEEEEEEECCC
LDGEPLTKTVALPMGEGATGRERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKL
CCCCCCCCEEEEECCCCCCHHHHHHHCCCCHHHCCCCCEEHHHHHCHHHHHCCHHCCCEE
VELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRGLAPA
EEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGI
CCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
LNDTEARAIHLAFAIFLAFCAFPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLAL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHC
RPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFMAFVFLGPYMPEVLQHRGASL
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
SRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGP
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCC
AKVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPV
HHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCHH
MGAAAFLMVEYVGIPYAEIIKHAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQ
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAVLAGAAYIVLMAYSSRYPGIA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE
IDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQ
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
PFMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGI
HHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
GVACASAGLIVGVITLTGMGLMMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
LVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVTPPVGLASYAAAAISGDDPNA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
TGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRT
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQT
HCCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHCCCHHHHHHHHCCCCCCCEEEEEEECCC
LDGEPLTKTVALPMGEGATGRERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKL
CCCCCCCCEEEEECCCCCCHHHHHHHCCCCHHHCCCCCEEHHHHHCHHHHHCCHHCCCEE
VELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRGLAPA
EEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA