| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787881
Identifier: 91787881
GI number: 91787881
Start: 2073924
End: 2076578
Strand: Direct
Name: 91787881
Synonym: Bpro_2005
Alternate gene names: NA
Gene position: 2073924-2076578 (Clockwise)
Preceding gene: 91787880
Following gene: 91787885
Centisome position: 39.88
GC content: 63.95
Gene sequence:
>2655_bases ATGGCGCAACTCGAAAAATACTCCCCCGAAAAACTCGATCAACTCGTCAAGGAAGTTGACCTGGGCGGGCGTGAGCCCGG CGGCAAGATCGGGCTGGGTCTGGCCGCTCTTGCGGCGGCGTGGTCACTGTTCCAGGTCTGGTATGCCTCGCCGCTGCCCT TTATCTTCGGCTTCGGCATTCTGAACGACACCGAGGCACGCGCCATCCATCTTGCATTTGCGATTTTTCTGGCCTTCTGC GCCTTTCCCGCCTTCAACCATTCGTCGCGCACCATCATTCCCTGGTCGGACTGGTTGCTCGCGCTGGTGGGTGCTTTTTG CGGTGCCTACCTTTTTCTGTTTTACAACCAGTTGGCGCTGCGGCCGGGCTCGCCGACGACGATGGACATCGTGATCGGCG TGACCGGCGTAGCCGTCATGCTGGAGGCGACGCGCCGGGCCATGGGCTTTGGCATGCTGGTGACCACGGGCCTGTTCATG GCCTTCGTGTTCCTCGGCCCCTACATGCCCGAGGTGTTGCAACACCGCGGTGCTTCGCTGTCGCGCTTCATCTCGCACAT GTGGCTGACCACCGAGGGCGTCTACGGTGTGGCGCTGGGTGTGTCGGTGCAATTCATTTTCCTGTTTGTGTTGTTTGGCA CCTTGCTGGACATTGCCGGCGCCGGCAATTACATGCTGCAGGTGTCGCTGGCCACCTTGGGTCACCTGCGCGGCGGCCCG GCCAAGGTGGCGGTGGTGTCGTCGGCGCTCAATGGCATTGTGTCCGGCTCGTCGGTGTCCAACGTGGTGTCGGGCGGCAT CTTCACCATCCCGCTGATGAAGCGCACCGGCTACTCGGGCGTCAAGGCCGGCGCCATCGAAGCGGCCTCCTCGATCAACG GACAGATCATGCCGCCGGTGATGGGCGCGGCGGCTTTCCTGATGGTTGAGTACGTGGGGATTCCGTACGCTGAGATCATC AAACACGCAGCGCTGCCGGCCGTCATTTCTTATGTGGCCTTGTTTTACATCGTGCATCTGGAGGCGCTGAAATATGACCT GAAGCCGCTGGTGCGTGAGCGCCAGCCCACCTGGCGCCAGCGTGTGCTGGGCTGGGCGCTTGGCCTGTCGGGTACCGCAG TGGCTGTCGCGGCTGTTTACTACGCTATCACCGCCGTGCAGGCGGTGGCGGGAGGTATGGCGGGCTGGGCCCTGGCTGTG CTGGCCGGCGCGGCTTATATCGTGCTGATGGCGTATTCGTCGCGGTACCCGGGCATCGCCATCGACGACCCGCTGGCGCC GGATATCAAGCTGCCGCTGCCCTGGCCGACGGTGCGCGCCGGCTTGCACTTTTTCATTCCCATCGTGGTGCTGCTGTGGT GCCTGATGGTTGAAGAACTGTCACCCGGCCTGTCTGCCTTCTGGGCCACCGCCACCGTCATGGTGATGGTGGTGTTGCAG CCTTTCATGCTGTCCGTCTTCCGCCCGAATGCCACAGCGGAGGTCGTGGCCTCCTCGGGCCAGGCAGAAGCGATGGCGTT CGCGTTGCAGCGCCAGAACCATGTGGTCAGCGCCTTGCAGCGCGGCGTAGCCGACCTGTGGCGCGGCCTGGTGCTGGGCG CGCGCAACATGATAGGCATCGGCGTGGCCTGCGCCAGTGCCGGCCTGATTGTCGGCGTCATCACGCTGACCGGCATGGGG CTGATGATGACCGACTTTGTCGAGTTGGTGTCGGCCGGCAATGTGCTGGTTATGTTGCTGCTGACGGCGCTGATCTGCCT GATCATCGGCGCCGGTGTGCCGACCACGGCCAACTACATTCTGGTGGCTACCCTGATGGCGCCGGTGATTGTGGAACTGG GCGGACGCAGCGGGTTGGTGATTCCGCTGATCGCCGTGCACCTGTTCGTTTTTTACTTCGGCATCCTGGCCGACGTGACG CCGCCGGTGGGGCTGGCGTCTTACGCCGCCGCGGCGATCTCCGGCGACGACCCGAATGCCACCGGCTGGCAGGCCACCTG GTACAGCCTGCGCACCACCGTCCTGCCTTTCGTGTTCATCTTCAACCCGCAGATTTTGCTGATCGGCCTGGGCTCATGGG TCGATGTGGTGCTGGTGTGTGTGACGGGCGTGGCTGCGTCATTGCTGTTTGCCGCGGCCACGATGAAATGGTTTCGCACC CGCTGCACCTGGCCGGAAGTTGCCATGCTGCTGCTGGCGACCTTCCTGTTCTTCCGACCTGACTGGGTGATTAACCAGTT CTCGCCCAAATACGTCAAGGCACCGGCCGCTGACATTTACAAGGTGGCTGATGGGCTGCATGCGGATGAATGGCTGGTGG TGGGCATTGCCGGCCAGACGCTGGACGGCGAGCCACTCACCAAAACAGTGGCGTTGCCGATGGGCGAGGGCGCCACGGGC AGGGAACGCCTGCGCGATGGCGGCGTGACGCTCAGCCAGCTGGGGCCCGACCTGGAGGTGGCGGCGGTCAAGTTTGGCAG CCGCGCGAAAAAGCTGGGTGTGGAGCAGGGCTACAAGCTGGTCGAGCTGAAGCTGCCGAACCCGGCCCGGCCCTCATCGC ATTGGGTGTTCATCCCGGCCGCGCTGCTGGGCTGGCTGGTGTGGTGGTTGCAGGGGCTGAGGCTGCGCCGGGGCAGGGGG TTGGCACCCGCATGA
Upstream 100 bases:
>100_bases GATCAAATAAATTCCTTCCGATGTCAACGAGCCGGGCCGGGAGCGTCATGTCTCCTGGCCTTTTTTAATAGAAGAATAAA GACGGTATGGAAGGGCGGTG
Downstream 100 bases:
>100_bases GCGCCGCCGGGCTGTCAGCCAAGTCAAGCGCAGGACTGGTCCGCGCCCCGCTGGCGCAAACAGCCACAAAACATGGCATC AGGTCTTGTTGTCCGGGTTC
Product: TRAP transporter, 4TM/12TM fusion protein
Products: NA
Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Permease Protein; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; TRAP-Type Transporter Permease Component; Inner Membrane Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; Permease; TRAP-Type Transport System Permease; TRAP Transporter Permease; Integral Membrane Protein; TRAP-Type Transporter Fused Permease Components; Transcriptional Regulator DeoR Family; TRAP Transporter Large Permease; Trap Family Transporter; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP Transporter 4TM/12TM Fusion Family; 4TM/12TM TRAP Transporter; C4-Dicarboxylate Transporter; TRAP-Type Transport System; TRAP Transporter Membrane-Spanning Component; TRAP Type Transporter Protein
Number of amino acids: Translated: 884; Mature: 883
Protein sequence:
>884_residues MAQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGILNDTEARAIHLAFAIFLAFC AFPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLALRPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFM AFVFLGPYMPEVLQHRGASLSRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGP AKVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPVMGAAAFLMVEYVGIPYAEII KHAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQRVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAV LAGAAYIVLMAYSSRYPGIAIDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQ PFMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGIGVACASAGLIVGVITLTGMG LMMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYILVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVT PPVGLASYAAAAISGDDPNATGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRT RCTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQTLDGEPLTKTVALPMGEGATG RERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKLVELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRG LAPA
Sequences:
>Translated_884_residues MAQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGILNDTEARAIHLAFAIFLAFC AFPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLALRPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFM AFVFLGPYMPEVLQHRGASLSRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGP AKVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPVMGAAAFLMVEYVGIPYAEII KHAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQRVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAV LAGAAYIVLMAYSSRYPGIAIDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQ PFMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGIGVACASAGLIVGVITLTGMG LMMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYILVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVT PPVGLASYAAAAISGDDPNATGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRT RCTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQTLDGEPLTKTVALPMGEGATG RERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKLVELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRG LAPA >Mature_883_residues AQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGILNDTEARAIHLAFAIFLAFCA FPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLALRPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFMA FVFLGPYMPEVLQHRGASLSRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGPA KVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPVMGAAAFLMVEYVGIPYAEIIK HAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQRVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAVL AGAAYIVLMAYSSRYPGIAIDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQP FMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGIGVACASAGLIVGVITLTGMGL MMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYILVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVTP PVGLASYAAAAISGDDPNATGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRTR CTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQTLDGEPLTKTVALPMGEGATGR ERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKLVELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRGL APA
Specific function: Unknown
COG id: COG4666
COG function: function code R; TRAP-type uncharacterized transport system, fused permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94381; Mature: 94250
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGI CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC LNDTEARAIHLAFAIFLAFCAFPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLAL CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHC RPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFMAFVFLGPYMPEVLQHRGASL CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH SRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGP HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCC AKVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPV HHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCHH MGAAAFLMVEYVGIPYAEIIKHAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQ HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH RVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAVLAGAAYIVLMAYSSRYPGIA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE IDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQ ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH PFMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGI HHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH GVACASAGLIVGVITLTGMGLMMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYI HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHH LVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVTPPVGLASYAAAAISGDDPNA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC TGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRT CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RCTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQT HCCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHCCCHHHHHHHHCCCCCCCEEEEEEECCC LDGEPLTKTVALPMGEGATGRERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKL CCCCCCCCEEEEECCCCCCHHHHHHHCCCCHHHCCCCCEEHHHHHCHHHHHCCHHCCCEE VELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRGLAPA EEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AQLEKYSPEKLDQLVKEVDLGGREPGGKIGLGLAALAAAWSLFQVWYASPLPFIFGFGI CCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC LNDTEARAIHLAFAIFLAFCAFPAFNHSSRTIIPWSDWLLALVGAFCGAYLFLFYNQLAL CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHC RPGSPTTMDIVIGVTGVAVMLEATRRAMGFGMLVTTGLFMAFVFLGPYMPEVLQHRGASL CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH SRFISHMWLTTEGVYGVALGVSVQFIFLFVLFGTLLDIAGAGNYMLQVSLATLGHLRGGP HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCC AKVAVVSSALNGIVSGSSVSNVVSGGIFTIPLMKRTGYSGVKAGAIEAASSINGQIMPPV HHHHHHHHHHHHHCCCCHHHHHHCCCEEEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCHH MGAAAFLMVEYVGIPYAEIIKHAALPAVISYVALFYIVHLEALKYDLKPLVRERQPTWRQ HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH RVLGWALGLSGTAVAVAAVYYAITAVQAVAGGMAGWALAVLAGAAYIVLMAYSSRYPGIA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE IDDPLAPDIKLPLPWPTVRAGLHFFIPIVVLLWCLMVEELSPGLSAFWATATVMVMVVLQ ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH PFMLSVFRPNATAEVVASSGQAEAMAFALQRQNHVVSALQRGVADLWRGLVLGARNMIGI HHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH GVACASAGLIVGVITLTGMGLMMTDFVELVSAGNVLVMLLLTALICLIIGAGVPTTANYI HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHH LVATLMAPVIVELGGRSGLVIPLIAVHLFVFYFGILADVTPPVGLASYAAAAISGDDPNA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC TGWQATWYSLRTTVLPFVFIFNPQILLIGLGSWVDVVLVCVTGVAASLLFAAATMKWFRT CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RCTWPEVAMLLLATFLFFRPDWVINQFSPKYVKAPAADIYKVADGLHADEWLVVGIAGQT HCCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHCCCHHHHHHHHCCCCCCCEEEEEEECCC LDGEPLTKTVALPMGEGATGRERLRDGGVTLSQLGPDLEVAAVKFGSRAKKLGVEQGYKL CCCCCCCCEEEEECCCCCCHHHHHHHCCCCHHHCCCCCEEHHHHHCHHHHHCCHHCCCEE VELKLPNPARPSSHWVFIPAALLGWLVWWLQGLRLRRGRGLAPA EEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA