| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787811
Identifier: 91787811
GI number: 91787811
Start: 1993564
End: 1994724
Strand: Reverse
Name: 91787811
Synonym: Bpro_1934
Alternate gene names: NA
Gene position: 1994724-1993564 (Counterclockwise)
Preceding gene: 91787812
Following gene: 91787810
Centisome position: 38.36
GC content: 58.23
Gene sequence:
>1161_bases ATGGCTACCGAACTCAACATCCGCGCCGACACCCTCGGAGCAAAGCTGCGGCATGCCCGCACGATACACAGGCTTACGCA GGAGGTTGCCGCAACGAAGCTCGACTTAGCCCGCACCACGCTAGTCGCAATTGAAGCTGGCAAACGACCTGTATCGAGCC AAGAGCTTCGGCAGTTTTCCGAGCTATACGACATCTCGGAGAGCGAGCTCCTCAACGAGAGGGAAGCCCACATTGAGCTT GGAGTCCACTTCCGCAGCTCTCCCACGGCCAAACAAGCTGACGACGAAGTTCTAGTGGCCAACATGCTTAACCGCCTGGC TAACTCCACCCTCCAGATTGAGGCATTGCTGGGCCAGGCCCCTCGCAACGTTGACCTGCCAACCGTAGATGTTCCAAAGA CGGGTTCACTTGAACGGCACGCAGAGGATGCCGCACTCAACTTGCGCTCTCGCTTTGGCATCGGGATGGGCCCCATCCAG AATCTCTGGGCATTGATGGAGTTTGAAATGGGCCTTCGTGTGTTCGAGCGCCCTCTACCCTCAAGGATTTCCGGCGCAGT AGCATTTGACGCGAAGGTCGGCGGCTTCGTCTTGTTGAACTCACTGCATCCTTTACCCAGGCGGCGTGTAACTGGCGTCC ACGAGGCTGGCCATATTGTCACCCGCACCACGGGCATCTCCGTTCATTTCGACGGGCAGCCGTCCTCCGACCGCACTGAG CGGTTCTGCGACCTCCTGGGCATTGCCTTCCTGACGCCAGCTGCCGCGTTGCGGCGCAAAGCGAAGGAACTCAAGGAGAT GTCAGGGGAGTTCTCGGTCAGGCAGCTGTTAATGCTGGCCGTCTTTTTTGGCGTTTCCATTGAGGCAATAACGCGACGCA TGGAAACCTTGGAAATGCTGCCTCTAGGAACTTTCGAGTCGCTTCGCACGCAGAAGGTCGGCCTTGAGCACCGCCGACGA GTCGCAGAGGAGATGAGCGTTATCGAGGAAGGACGGCCATTTACGCCTCGGGCACTTATGCTCGCAAGTATTGCCCACGA GCGCGAACTCCTTTCCGAGCAGCAAATTGCTTCCATGCTAGAGCTGAACCTCGTCGATGTGCGCCAGGCGCTCGAGGAGC ACCAGGGGGATGGGGAGATGGTGCTTGAACTTGCTGAGTGA
Upstream 100 bases:
>100_bases CAGTTGGAGAAATTCCTTAAACAACACCAGACTGAGTGGTCACAATTTCTCGATGAATGCGGCCCACAGTCGTGGGTCGC GGACCTCGCCAGGAACTGAC
Downstream 100 bases:
>100_bases CTATCTGCCGAGCGGCCAGCCGGTCCTGGACGCCAGCGTCATCATCAACTTGCTCGGCACCAAGGAGCCAGTTGCGATTT TCGATGCTCTTGGACACAAG
Product: hypothetical protein
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Conserved Domain Protein
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MATELNIRADTLGAKLRHARTIHRLTQEVAATKLDLARTTLVAIEAGKRPVSSQELRQFSELYDISESELLNEREAHIEL GVHFRSSPTAKQADDEVLVANMLNRLANSTLQIEALLGQAPRNVDLPTVDVPKTGSLERHAEDAALNLRSRFGIGMGPIQ NLWALMEFEMGLRVFERPLPSRISGAVAFDAKVGGFVLLNSLHPLPRRRVTGVHEAGHIVTRTTGISVHFDGQPSSDRTE RFCDLLGIAFLTPAAALRRKAKELKEMSGEFSVRQLLMLAVFFGVSIEAITRRMETLEMLPLGTFESLRTQKVGLEHRRR VAEEMSVIEEGRPFTPRALMLASIAHERELLSEQQIASMLELNLVDVRQALEEHQGDGEMVLELAE
Sequences:
>Translated_386_residues MATELNIRADTLGAKLRHARTIHRLTQEVAATKLDLARTTLVAIEAGKRPVSSQELRQFSELYDISESELLNEREAHIEL GVHFRSSPTAKQADDEVLVANMLNRLANSTLQIEALLGQAPRNVDLPTVDVPKTGSLERHAEDAALNLRSRFGIGMGPIQ NLWALMEFEMGLRVFERPLPSRISGAVAFDAKVGGFVLLNSLHPLPRRRVTGVHEAGHIVTRTTGISVHFDGQPSSDRTE RFCDLLGIAFLTPAAALRRKAKELKEMSGEFSVRQLLMLAVFFGVSIEAITRRMETLEMLPLGTFESLRTQKVGLEHRRR VAEEMSVIEEGRPFTPRALMLASIAHERELLSEQQIASMLELNLVDVRQALEEHQGDGEMVLELAE >Mature_385_residues ATELNIRADTLGAKLRHARTIHRLTQEVAATKLDLARTTLVAIEAGKRPVSSQELRQFSELYDISESELLNEREAHIELG VHFRSSPTAKQADDEVLVANMLNRLANSTLQIEALLGQAPRNVDLPTVDVPKTGSLERHAEDAALNLRSRFGIGMGPIQN LWALMEFEMGLRVFERPLPSRISGAVAFDAKVGGFVLLNSLHPLPRRRVTGVHEAGHIVTRTTGISVHFDGQPSSDRTER FCDLLGIAFLTPAAALRRKAKELKEMSGEFSVRQLLMLAVFFGVSIEAITRRMETLEMLPLGTFESLRTQKVGLEHRRRV AEEMSVIEEGRPFTPRALMLASIAHERELLSEQQIASMLELNLVDVRQALEEHQGDGEMVLELAE
Specific function: Unknown
COG id: COG2856
COG function: function code E; Predicted Zn peptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42985; Mature: 42854
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATELNIRADTLGAKLRHARTIHRLTQEVAATKLDLARTTLVAIEAGKRPVSSQELRQFS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHH ELYDISESELLNEREAHIELGVHFRSSPTAKQADDEVLVANMLNRLANSTLQIEALLGQA HHHCCCHHHHHHHHHCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCC PRNVDLPTVDVPKTGSLERHAEDAALNLRSRFGIGMGPIQNLWALMEFEMGLRVFERPLP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC SRISGAVAFDAKVGGFVLLNSLHPLPRRRVTGVHEAGHIVTRTTGISVHFDGQPSSDRTE HHHCCCEEEECCCCCCCEECCCCCCCHHHHCCCHHCCCEEEEEEEEEEEECCCCCCHHHH RFCDLLGIAFLTPAAALRRKAKELKEMSGEFSVRQLLMLAVFFGVSIEAITRRMETLEML HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC PLGTFESLRTQKVGLEHRRRVAEEMSVIEEGRPFTPRALMLASIAHERELLSEQQIASML CCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ELNLVDVRQALEEHQGDGEMVLELAE HHHHHHHHHHHHHHCCCCCEEEEECC >Mature Secondary Structure ATELNIRADTLGAKLRHARTIHRLTQEVAATKLDLARTTLVAIEAGKRPVSSQELRQFS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHH ELYDISESELLNEREAHIELGVHFRSSPTAKQADDEVLVANMLNRLANSTLQIEALLGQA HHHCCCHHHHHHHHHCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCC PRNVDLPTVDVPKTGSLERHAEDAALNLRSRFGIGMGPIQNLWALMEFEMGLRVFERPLP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC SRISGAVAFDAKVGGFVLLNSLHPLPRRRVTGVHEAGHIVTRTTGISVHFDGQPSSDRTE HHHCCCEEEECCCCCCCEECCCCCCCHHHHCCCHHCCCEEEEEEEEEEEECCCCCCHHHH RFCDLLGIAFLTPAAALRRKAKELKEMSGEFSVRQLLMLAVFFGVSIEAITRRMETLEML HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC PLGTFESLRTQKVGLEHRRRVAEEMSVIEEGRPFTPRALMLASIAHERELLSEQQIASML CCCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ELNLVDVRQALEEHQGDGEMVLELAE HHHHHHHHHHHHHHCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA