| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is pld [H]
Identifier: 91787807
GI number: 91787807
Start: 1989703
End: 1990245
Strand: Direct
Name: pld [H]
Synonym: Bpro_1930
Alternate gene names: 91787807
Gene position: 1989703-1990245 (Clockwise)
Preceding gene: 91787806
Following gene: 91787808
Centisome position: 38.26
GC content: 56.17
Gene sequence:
>543_bases ATGCGCCTGCGCCTCCTCTTCGTTCTCGCCCTTGCCGTGCCGGCCGGTTGCGCGATCCAGCCGCCCGCCGTTATTCCAAC TGCGCAAATCGAAGTCACATTTTCACCGGAGGCGGGCTCAGAAAAGCTGGTTCTAAAGGTCATTGGCAGCGCACGTCAGT CCATACGTTTGGCTGGTTATTCATTCACCTCTCCGGTGGTGGTCCGTGGCTTGATTGAGGCGAAGCGTCGAGGCGTTGAC GTGAGGGTTCTGGTTGACGATAGAGGCAACCGGAGCCAGGCCAGCATCGCCGCGCTTAACCTGCTCCTTGGCGCAGAAAT ACCAACTCGGGTGATCTCGACCTATGCGATTCACCACGATAAGTACATCGTCGTCGATGGCAGGCATACGCAGACGGGCT CATTTAATTACAGCCAGGCGGCGGCAAAGTCCAACTCCGAAAACGTCTTGACAGTTTGGGACAACCCCAGCGTCGCCAGC CTATATCTTGCTCATTGGGAAAGCAGATGGGCTCAAGGTATTCTGATTGACCGGAAATACTAG
Upstream 100 bases:
>100_bases TGATGCGCAGGCGCGATGAGCGTTTCAAAAACCAGGGCAAGTACAAGGGGCTGCCTGATCCGCTTTACGACAAGGGCGAG TCCACCCACTGTGCAAACTG
Downstream 100 bases:
>100_bases CTCCAACGGGTGATGAATTAATGGAATTCTGGGCCTGCCAAGCTACCATGGGAACTGCCGCCGGTTAGCGCTCGACCCAA CGGGGTAGGTCGGCGCTAAA
Product: phospholipase D/transphosphatidylase
Products: NA
Alternate protein names: PLD; Choline phosphatase [H]
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGYSFTSPVVVRGLIEAKRRGVD VRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHDKYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVAS LYLAHWESRWAQGILIDRKY
Sequences:
>Translated_180_residues MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGYSFTSPVVVRGLIEAKRRGVD VRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHDKYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVAS LYLAHWESRWAQGILIDRKY >Mature_180_residues MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGYSFTSPVVVRGLIEAKRRGVD VRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHDKYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVAS LYLAHWESRWAQGILIDRKY
Specific function: Could be a virulence factor [H]
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PLD phosphodiesterase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001736 [H]
Pfam domain/function: NA
EC number: =3.1.4.4 [H]
Molecular weight: Translated: 19665; Mature: 19665
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGY CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEHHHHHHEEEEECC SFTSPVVVRGLIEAKRRGVDVRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHD CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHEEEEECC KYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVASLYLAHWESRWAQGILIDRKY CEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEECC >Mature Secondary Structure MRLRLLFVLALAVPAGCAIQPPAVIPTAQIEVTFSPEAGSEKLVLKVIGSARQSIRLAGY CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEHHHHHHEEEEECC SFTSPVVVRGLIEAKRRGVDVRVLVDDRGNRSQASIAALNLLLGAEIPTRVISTYAIHHD CCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHEEEEECC KYIVVDGRHTQTGSFNYSQAAAKSNSENVLTVWDNPSVASLYLAHWESRWAQGILIDRKY CEEEEECCCCCCCCCCCHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA