| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91787697
Identifier: 91787697
GI number: 91787697
Start: 1882566
End: 1883546
Strand: Direct
Name: 91787697
Synonym: Bpro_1818
Alternate gene names: NA
Gene position: 1882566-1883546 (Clockwise)
Preceding gene: 91787696
Following gene: 91787698
Centisome position: 36.2
GC content: 63.4
Gene sequence:
>981_bases ATGCGTTATCTGTCTAACTGCCTCCGCATGCTCGGAGTCGTCGCGCTCATTGCCGCATCCGCAGCCGCTCAAGCCCAAAC CTGGCCCGAGCGGCCGGTGCGCTTGGTGGTGCCGTTTCCTGCCGGCGGCGCAACCGACCTGGTTGCCAGGGTTATTGCCC AGCGCGTGTCAAAAGACATCGGGCAGCAAATCGTCGTTGATAACAAGGCCGGTGCGGGCGGCACCATAGGCTCGGCCGAG GCCGCAAAGGCGACGGCCGATGCCTATACCCTGCTATTGACGACGAGCAGCACGCACGCCATCTCGCCGCACCTCATGCC CAAGCTGCCCTACGACGCCATCAAGGATTTCACGCCGATTGCGCACCTGGCCGACGCCGCGAGCGTGCTGCTTGTGACAC CGTCGCTGCCTGTGAAAACGGTGCCCGAGCTGATCGCTTACGCCAAAAAGCATCCTGGCCAACTCAATTACGCCAGCAGC GGCAATGGCACTATCGTGCATTTGACGACCGAAGCCTTCAAGGCCCAGGCTGGCATTTTTATTACCCACGTGCCTTACAA GGGCACGGCACTGGCCATTCCCGATGTCATTGCCGGCTCGGTGCCGGTGCTGATCGACTCCATCCCGTCGGGCATGCCGC ATGTCAAGAGTGGTCGGCTGCGTGCCTTGGCCGTCACCGGAGACAAGCGCTCCGCACTGGCGCCCGAGCTGCCGACCGTG GCCGAGGCGGGCCTTCCTGGTTTTTCATCCGTGACCTGGTTTGGGCTGTATGCACCGCGCGGCATGAAGGCTGATCTGGT GGTGCGTGTGCATGAGGCCTTCGCTAAGGCGGCCCACGCGCCCGAGGTGGTGGAAAGCCTGGCCAAACTCGGTGTTGAAC CCGCCCCACCGGGCACGCCCGCACAGTTCGCCGAGATGGTGTCTGCCGACAGCCAGCGCTGGGCGCGCATCATTCGCGAA CGCAAGATCACCCTTGAATGA
Upstream 100 bases:
>100_bases TGCAAATTCTCTTATTGTGGTAATGCTGAAGTCTTCCTAAGATGCTGTCGGACCTGACTTTCCTGGCATCGCTCGCCCCA CCATTCAAGGAAAATTTCAC
Downstream 100 bases:
>100_bases AATACACACCCATGCCCATTCCATCCGCCATGGACTTCACGAATCCCTATGCCTCGGCACGTTCTGCCGTGCTGGGGCGC AACGTTGTCAGTACCTCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MRYLSNCLRMLGVVALIAASAAAQAQTWPERPVRLVVPFPAGGATDLVARVIAQRVSKDIGQQIVVDNKAGAGGTIGSAE AAKATADAYTLLLTTSSTHAISPHLMPKLPYDAIKDFTPIAHLADAASVLLVTPSLPVKTVPELIAYAKKHPGQLNYASS GNGTIVHLTTEAFKAQAGIFITHVPYKGTALAIPDVIAGSVPVLIDSIPSGMPHVKSGRLRALAVTGDKRSALAPELPTV AEAGLPGFSSVTWFGLYAPRGMKADLVVRVHEAFAKAAHAPEVVESLAKLGVEPAPPGTPAQFAEMVSADSQRWARIIRE RKITLE
Sequences:
>Translated_326_residues MRYLSNCLRMLGVVALIAASAAAQAQTWPERPVRLVVPFPAGGATDLVARVIAQRVSKDIGQQIVVDNKAGAGGTIGSAE AAKATADAYTLLLTTSSTHAISPHLMPKLPYDAIKDFTPIAHLADAASVLLVTPSLPVKTVPELIAYAKKHPGQLNYASS GNGTIVHLTTEAFKAQAGIFITHVPYKGTALAIPDVIAGSVPVLIDSIPSGMPHVKSGRLRALAVTGDKRSALAPELPTV AEAGLPGFSSVTWFGLYAPRGMKADLVVRVHEAFAKAAHAPEVVESLAKLGVEPAPPGTPAQFAEMVSADSQRWARIIRE RKITLE >Mature_326_residues MRYLSNCLRMLGVVALIAASAAAQAQTWPERPVRLVVPFPAGGATDLVARVIAQRVSKDIGQQIVVDNKAGAGGTIGSAE AAKATADAYTLLLTTSSTHAISPHLMPKLPYDAIKDFTPIAHLADAASVLLVTPSLPVKTVPELIAYAKKHPGQLNYASS GNGTIVHLTTEAFKAQAGIFITHVPYKGTALAIPDVIAGSVPVLIDSIPSGMPHVKSGRLRALAVTGDKRSALAPELPTV AEAGLPGFSSVTWFGLYAPRGMKADLVVRVHEAFAKAAHAPEVVESLAKLGVEPAPPGTPAQFAEMVSADSQRWARIIRE RKITLE
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34159; Mature: 34159
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYLSNCLRMLGVVALIAASAAAQAQTWPERPVRLVVPFPAGGATDLVARVIAQRVSKDI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH GQQIVVDNKAGAGGTIGSAEAAKATADAYTLLLTTSSTHAISPHLMPKLPYDAIKDFTPI CCEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCHH AHLADAASVLLVTPSLPVKTVPELIAYAKKHPGQLNYASSGNGTIVHLTTEAFKAQAGIF HHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEHHHHHCCCCEE ITHVPYKGTALAIPDVIAGSVPVLIDSIPSGMPHVKSGRLRALAVTGDKRSALAPELPTV EEECCCCCCEEECCHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH AEAGLPGFSSVTWFGLYAPRGMKADLVVRVHEAFAKAAHAPEVVESLAKLGVEPAPPGTP HHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCH AQFAEMVSADSQRWARIIRERKITLE HHHHHHHCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MRYLSNCLRMLGVVALIAASAAAQAQTWPERPVRLVVPFPAGGATDLVARVIAQRVSKDI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH GQQIVVDNKAGAGGTIGSAEAAKATADAYTLLLTTSSTHAISPHLMPKLPYDAIKDFTPI CCEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCHH AHLADAASVLLVTPSLPVKTVPELIAYAKKHPGQLNYASSGNGTIVHLTTEAFKAQAGIF HHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEEHHHHHCCCCEE ITHVPYKGTALAIPDVIAGSVPVLIDSIPSGMPHVKSGRLRALAVTGDKRSALAPELPTV EEECCCCCCEEECCHHHCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHH AEAGLPGFSSVTWFGLYAPRGMKADLVVRVHEAFAKAAHAPEVVESLAKLGVEPAPPGTP HHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCH AQFAEMVSADSQRWARIIRERKITLE HHHHHHHCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]