| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is yiaO [C]
Identifier: 91787656
GI number: 91787656
Start: 1832666
End: 1833619
Strand: Reverse
Name: yiaO [C]
Synonym: Bpro_1774
Alternate gene names: 91787656
Gene position: 1833619-1832666 (Counterclockwise)
Preceding gene: 91787665
Following gene: 91787655
Centisome position: 35.26
GC content: 58.7
Gene sequence:
>954_bases GTGCTGAGCACTGGCACTACAGCATTCGCCCAGACCAAATGGGATTTGCCGGCGGCCTACCCTACGTCCAACTTTCACAC CGAAAACCTGGCGCAATTCGCTGCAGACGTTGACAAAGCCAGCGGTGGCAAGCTGAAGATCACGGTGCATGCGAATGCAT CGCTTTTCAAGGCCAATGAGATCAAGCGCGCCGTTCAGGGCGGCCAGGCACAGTTGGGCGAGATTTTGCTCGTCAACTTT GAAAATGAAAACCCGATTTATGGCGCGGATGGTCTGCCCTTTCTGGCATCAAGCTATCCGGCCGCCCGCAAGCTGGCCGA TGCGCAAAAACCGGCGCTCGACAAACTGCTGGGCACGCAAGGCATGAAGCTGCTCTACACCGTGCCTTGGCCCCCGCAGG GGGTGTATGTCAACAAGGAAATCACCGCCGTCGCCGACATGAAGGGCCTGAAGTGGCGTGCCTACAGCCCCGCCACCAGC AAGATCGCCGAGCTGATCGGCGCGCAGCCCGTGACAGTACAGGCTGCCGAGCTGAGCCAGGCGCTGGCCACCGGCGTGGT CAACAGCTACATGAGCTCCGGTTCGACCGGCTACGACACCAAGACCTACGAGAGCATCAAGTACTGGTATGACGTGCAGG CCTGGTTGCCGAAAAACGCCGTCATCGTCAACAAGAAATCGTTTGACGCGCTCGATGCGCCTACCCAGGCCGCTGTGTTG AAAGCCGCCGCAGACGCCGAGGTGCGCGGCTGGAAAATCAGCGAAGAAAAAAACGAGTTTTACAAAAAGGCGCTGGCTGA AAAAGGCATGAAGATCATGACGCCGTCGCCCAAGCTGGCGGCTGACTTCCGGCAAGTCGGCGGCATCATGAAAACAGACT GGATCAAACGCGCAGGCGCCGACGGTGAAGCGCTGCTGTCAGCCTACGAGAAATCAGCCGCGGCCAAGAAATAA
Upstream 100 bases:
>100_bases TCCGGGGAAGCTGGCGCGGGATTTGCGTCTATCCTCTTCATACTTATCACCCTATTGTCCTGGAGCTTTCATGAAACTCA AACTTGCACTGATCGCCGCC
Downstream 100 bases:
>100_bases ACATGCGCCGGCTGCTTGATGCGCTTTATGACGGCGCGGCCTGGCTGGGTGCCCTCGGCATGATAGGCACGCTGGTCTCC GTGCTGGCCGGTGTGCTGGA
Product: TRAP dicarboxylate transporter subunit DctP
Products: NA
Alternate protein names: TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter DctP Subunit; TRAP Dicarboxylate Transporter-DctP Subunit; Signal Peptide Protein; Exported Protein; Trap Transporter Periplasmic Protein; Twin-Arginine Translocation Pathway Signal; TRAP Transporter; Trap Dicarboxylate Transporter Dctp Subunit; TRAP Dicarboxylate Transporter; Trap Dicarboxylate Transporter-Dctp Subunit; TRAP-Type C4-Dicarboxylate Transporter Periplasmic Protein; TRAP-Type Transporter Periplasmic Component; TRAP Transporter Periplasmic Protein; Secreted Protein
Number of amino acids: Translated: 317; Mature: 317
Protein sequence:
>317_residues MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANEIKRAVQGGQAQLGEILLVNF ENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQGMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATS KIAELIGAQPVTVQAAELSQALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGADGEALLSAYEKSAAAKK
Sequences:
>Translated_317_residues MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANEIKRAVQGGQAQLGEILLVNF ENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQGMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATS KIAELIGAQPVTVQAAELSQALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGADGEALLSAYEKSAAAKK >Mature_317_residues MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANEIKRAVQGGQAQLGEILLVNF ENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQGMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATS KIAELIGAQPVTVQAAELSQALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGADGEALLSAYEKSAAAKK
Specific function: Unknown
COG id: COG1638
COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34177; Mature: 34177
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANE CCCCCCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH IKRAVQGGQAQLGEILLVNFENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQ HHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCHHHCCCCHHHHHHHHCCHHHHHHHCCC GMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATSKIAELIGAQPVTVQAAELSQ CCEEEEECCCCCCCEEECCCEEEECCCCCCEEEECCCHHHHHHHHHCCCCCEEEHHHHHH ALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL HHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHH KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGA HHHCCCCCCCEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCHHHHHHHHCCC DGEALLSAYEKSAAAKK CHHHHHHHHHHHHCCCC >Mature Secondary Structure MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANE CCCCCCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH IKRAVQGGQAQLGEILLVNFENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQ HHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCHHHCCCCHHHHHHHHCCHHHHHHHCCC GMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATSKIAELIGAQPVTVQAAELSQ CCEEEEECCCCCCCEEECCCEEEECCCCCCEEEECCCHHHHHHHHHCCCCCEEEHHHHHH ALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL HHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHH KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGA HHHCCCCCCCEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCHHHHHHHHCCC DGEALLSAYEKSAAAKK CHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA