Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yiaO [C]

Identifier: 91787656

GI number: 91787656

Start: 1832666

End: 1833619

Strand: Reverse

Name: yiaO [C]

Synonym: Bpro_1774

Alternate gene names: 91787656

Gene position: 1833619-1832666 (Counterclockwise)

Preceding gene: 91787665

Following gene: 91787655

Centisome position: 35.26

GC content: 58.7

Gene sequence:

>954_bases
GTGCTGAGCACTGGCACTACAGCATTCGCCCAGACCAAATGGGATTTGCCGGCGGCCTACCCTACGTCCAACTTTCACAC
CGAAAACCTGGCGCAATTCGCTGCAGACGTTGACAAAGCCAGCGGTGGCAAGCTGAAGATCACGGTGCATGCGAATGCAT
CGCTTTTCAAGGCCAATGAGATCAAGCGCGCCGTTCAGGGCGGCCAGGCACAGTTGGGCGAGATTTTGCTCGTCAACTTT
GAAAATGAAAACCCGATTTATGGCGCGGATGGTCTGCCCTTTCTGGCATCAAGCTATCCGGCCGCCCGCAAGCTGGCCGA
TGCGCAAAAACCGGCGCTCGACAAACTGCTGGGCACGCAAGGCATGAAGCTGCTCTACACCGTGCCTTGGCCCCCGCAGG
GGGTGTATGTCAACAAGGAAATCACCGCCGTCGCCGACATGAAGGGCCTGAAGTGGCGTGCCTACAGCCCCGCCACCAGC
AAGATCGCCGAGCTGATCGGCGCGCAGCCCGTGACAGTACAGGCTGCCGAGCTGAGCCAGGCGCTGGCCACCGGCGTGGT
CAACAGCTACATGAGCTCCGGTTCGACCGGCTACGACACCAAGACCTACGAGAGCATCAAGTACTGGTATGACGTGCAGG
CCTGGTTGCCGAAAAACGCCGTCATCGTCAACAAGAAATCGTTTGACGCGCTCGATGCGCCTACCCAGGCCGCTGTGTTG
AAAGCCGCCGCAGACGCCGAGGTGCGCGGCTGGAAAATCAGCGAAGAAAAAAACGAGTTTTACAAAAAGGCGCTGGCTGA
AAAAGGCATGAAGATCATGACGCCGTCGCCCAAGCTGGCGGCTGACTTCCGGCAAGTCGGCGGCATCATGAAAACAGACT
GGATCAAACGCGCAGGCGCCGACGGTGAAGCGCTGCTGTCAGCCTACGAGAAATCAGCCGCGGCCAAGAAATAA

Upstream 100 bases:

>100_bases
TCCGGGGAAGCTGGCGCGGGATTTGCGTCTATCCTCTTCATACTTATCACCCTATTGTCCTGGAGCTTTCATGAAACTCA
AACTTGCACTGATCGCCGCC

Downstream 100 bases:

>100_bases
ACATGCGCCGGCTGCTTGATGCGCTTTATGACGGCGCGGCCTGGCTGGGTGCCCTCGGCATGATAGGCACGCTGGTCTCC
GTGCTGGCCGGTGTGCTGGA

Product: TRAP dicarboxylate transporter subunit DctP

Products: NA

Alternate protein names: TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter DctP Subunit; TRAP Dicarboxylate Transporter-DctP Subunit; Signal Peptide Protein; Exported Protein; Trap Transporter Periplasmic Protein; Twin-Arginine Translocation Pathway Signal; TRAP Transporter; Trap Dicarboxylate Transporter Dctp Subunit; TRAP Dicarboxylate Transporter; Trap Dicarboxylate Transporter-Dctp Subunit; TRAP-Type C4-Dicarboxylate Transporter Periplasmic Protein; TRAP-Type Transporter Periplasmic Component; TRAP Transporter Periplasmic Protein; Secreted Protein

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANEIKRAVQGGQAQLGEILLVNF
ENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQGMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATS
KIAELIGAQPVTVQAAELSQALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL
KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGADGEALLSAYEKSAAAKK

Sequences:

>Translated_317_residues
MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANEIKRAVQGGQAQLGEILLVNF
ENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQGMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATS
KIAELIGAQPVTVQAAELSQALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL
KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGADGEALLSAYEKSAAAKK
>Mature_317_residues
MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANEIKRAVQGGQAQLGEILLVNF
ENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQGMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATS
KIAELIGAQPVTVQAAELSQALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL
KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGADGEALLSAYEKSAAAKK

Specific function: Unknown

COG id: COG1638

COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34177; Mature: 34177

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANE
CCCCCCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH
IKRAVQGGQAQLGEILLVNFENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQ
HHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCHHHCCCCHHHHHHHHCCHHHHHHHCCC
GMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATSKIAELIGAQPVTVQAAELSQ
CCEEEEECCCCCCCEEECCCEEEECCCCCCEEEECCCHHHHHHHHHCCCCCEEEHHHHHH
ALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL
HHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHH
KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGA
HHHCCCCCCCEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCHHHHHHHHCCC
DGEALLSAYEKSAAAKK
CHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSTGTTAFAQTKWDLPAAYPTSNFHTENLAQFAADVDKASGGKLKITVHANASLFKANE
CCCCCCCHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH
IKRAVQGGQAQLGEILLVNFENENPIYGADGLPFLASSYPAARKLADAQKPALDKLLGTQ
HHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCHHHCCCCHHHHHHHHCCHHHHHHHCCC
GMKLLYTVPWPPQGVYVNKEITAVADMKGLKWRAYSPATSKIAELIGAQPVTVQAAELSQ
CCEEEEECCCCCCCEEECCCEEEECCCCCCEEEECCCHHHHHHHHHCCCCCEEEHHHHHH
ALATGVVNSYMSSGSTGYDTKTYESIKYWYDVQAWLPKNAVIVNKKSFDALDAPTQAAVL
HHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHH
KAAADAEVRGWKISEEKNEFYKKALAEKGMKIMTPSPKLAADFRQVGGIMKTDWIKRAGA
HHHCCCCCCCEECCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHCCCHHHHHHHHCCC
DGEALLSAYEKSAAAKK
CHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA