| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91787655
Identifier: 91787655
GI number: 91787655
Start: 1832154
End: 1832663
Strand: Reverse
Name: 91787655
Synonym: Bpro_1773
Alternate gene names: NA
Gene position: 1832663-1832154 (Counterclockwise)
Preceding gene: 91787656
Following gene: 91787654
Centisome position: 35.24
GC content: 60.98
Gene sequence:
>510_bases ATGCGCCGGCTGCTTGATGCGCTTTATGACGGCGCGGCCTGGCTGGGTGCCCTCGGCATGATAGGCACGCTGGTCTCCGT GCTGGCCGGTGTGCTGGACCGGCAGTTTGCCTGGTCGCTGCGCGGCACCGACATGTACGCCGGCTACTGCATGGCGGCCA GCGGCTTCCTGGCCTTGGCGCACACCCTCAAAAAAGGCGAACACATCCGCGTCACGCTGATTCTCAACGCCGCCAGAGGA CGAGCCAGGCGGGCGATTGAAATATGGGCGCTTGCAGCAGCGACGGCGCTGGCCATGCTGTTTGCTTACTACAGCGTCAA GCTATCGATCAACTCCTGGCAGTTCAACGATATCTCCACCGGCAATGACGCAACACCACTGTGGATTCCACAGATCACCA TGGGCGTTGGGGCCGTGATCCTGATGATTGCCTTCATCGACGAACTGGTGCTGGAGATCATGGGGCGGCGTGTTCAGGCG GACAGCGACGAAGCCTTGCACTACGAATAA
Upstream 100 bases:
>100_bases TCGGCGGCATCATGAAAACAGACTGGATCAAACGCGCAGGCGCCGACGGTGAAGCGCTGCTGTCAGCCTACGAGAAATCA GCCGCGGCCAAGAAATAAAC
Downstream 100 bases:
>100_bases TCAGAAGAACAAATCCCATGTCTGAACTTGCCATCACCTCTTTACTGATTCTTTCGCTGTTCCTCATATTGGGCTCGGGC GTCTGGATCGGCCTCACCCT
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; TRAP-Type C4-Dicarboxylate Transporter Small Permease
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MRRLLDALYDGAAWLGALGMIGTLVSVLAGVLDRQFAWSLRGTDMYAGYCMAASGFLALAHTLKKGEHIRVTLILNAARG RARRAIEIWALAAATALAMLFAYYSVKLSINSWQFNDISTGNDATPLWIPQITMGVGAVILMIAFIDELVLEIMGRRVQA DSDEALHYE
Sequences:
>Translated_169_residues MRRLLDALYDGAAWLGALGMIGTLVSVLAGVLDRQFAWSLRGTDMYAGYCMAASGFLALAHTLKKGEHIRVTLILNAARG RARRAIEIWALAAATALAMLFAYYSVKLSINSWQFNDISTGNDATPLWIPQITMGVGAVILMIAFIDELVLEIMGRRVQA DSDEALHYE >Mature_169_residues MRRLLDALYDGAAWLGALGMIGTLVSVLAGVLDRQFAWSLRGTDMYAGYCMAASGFLALAHTLKKGEHIRVTLILNAARG RARRAIEIWALAAATALAMLFAYYSVKLSINSWQFNDISTGNDATPLWIPQITMGVGAVILMIAFIDELVLEIMGRRVQA DSDEALHYE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18494; Mature: 18494
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLLDALYDGAAWLGALGMIGTLVSVLAGVLDRQFAWSLRGTDMYAGYCMAASGFLALA CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH HTLKKGEHIRVTLILNAARGRARRAIEIWALAAATALAMLFAYYSVKLSINSWQFNDIST HHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEECCCCCC GNDATPLWIPQITMGVGAVILMIAFIDELVLEIMGRRVQADSDEALHYE CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MRRLLDALYDGAAWLGALGMIGTLVSVLAGVLDRQFAWSLRGTDMYAGYCMAASGFLALA CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH HTLKKGEHIRVTLILNAARGRARRAIEIWALAAATALAMLFAYYSVKLSINSWQFNDIST HHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEECCCCCC GNDATPLWIPQITMGVGAVILMIAFIDELVLEIMGRRVQADSDEALHYE CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA