| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gltX
Identifier: 91787493
GI number: 91787493
Start: 1661005
End: 1662393
Strand: Direct
Name: gltX
Synonym: Bpro_1609
Alternate gene names: 91787493
Gene position: 1661005-1662393 (Clockwise)
Preceding gene: 91787492
Following gene: 91787494
Centisome position: 31.94
GC content: 62.99
Gene sequence:
>1389_bases ATGACACAGAAAATACGAACGCGTTTTGCGCCATCGCCCACGGGCTTTATCCACCTGGGCAACATCCGCTCGGCGCTGTA CCCGTGGGCATTTGCCCGCGCCACCGGCGGCGATTTCATTTTGCGCATTGAAGACACGGACGTGGAGCGTTCCAGCCAGG CCGCGGTCGACGTGATCATCGAGGGCATGCGCTGGCTGGGCCTGGACCATGACGAGGGCCCTTTCTACCAGATGCAGCGC ATGGACCGCTACAAGGCCGTGCTGGCCGAGATGCAGGCGGCCGGCCAGGTCTACCCCTGCTACATGAGCGTGGCCGAGCT CGACGCGCTGCGCGAAAAGCAGATGGCCGCCAAGGAAAAACCGCGCTATGACGGCACCTGGCGGCCCGAGCCGGGCAAGA CGCTGCCGCCCATTCCCGCGGGCGTGCAGCCCGTGCTGCGCTTTAAAAACCCGCAGGGCGGCTCGGTGGTCTGGGACGAC AAGGTCAAGGGCCGCATCGAGATCAGCAACGACGAGCTCGATGACCTCGTCATTGCGCGGCCGGATGGCACACCCACCTA CAACTTCTGCGTGGTGGTGGACGATATCGACATGGCCATCACGCATGTGATTCGCGGCGATGACCATGTGAACAACACGC CGCGCCAGATCAATATCTTCCGCGCGCTCGGCAAGGACGTGCCGGTTTATGCCCATTTGCCCACGGTTCTGAACGAACAG GGCGAAAAGATGAGCAAGCGCAACGGTGCCAAGCCGGTGACGCAGTACGCGGCCGAAGGTTACTTGCCCGACGCCATGGT GAACTACCTGGCGCGCCTCGGCTGGAGTCACGGCGACGACGAGATTTTCAGCCGCGAGCAATTCCTGAAGTGGTTCAACC TCGATCACCTCGGCAAGAGTGCCGCACAGTTCGATGAAGCGAAGCTGCGCTGGGTCAATGCACAGCACCTCAAGGCTACG GCAGACGACAAGCTGGCCGAACTTGTGCAGCCCTTCCTGGCTGCGCGCGGCGTGGGCCTGGACACCGCACGCATGGTCGG TGGTTGCGGGCTTTTCAAGGACCGCTGCAGCACGCTGGTGGAGCTGGCCGACTGGCTGCAATTGCTGGTGACGGGCGGAC AGCCGAGCGCACAGGATATCAGCACCCACGTGACCGAAGCCGTGCGCCCGGCTCTGGGCAAACTGGCCGATGCGCTGGTT GCCTGCGAGTGGAGCAAGGCGGCCATTGCGGCGGCGATCAAACAGGTGCTCGCGGAGACCGGACTGAAAATGCCGCAGCT CGCGATGGCGGTGCGCGTGCTGGTGATGGGCACTCCGCAAACGCCCTCGCTGGATGCGATTCTGGAGCTCATGAAACGGG AAGATGTGATCTCGCGTTTGAAGATTTGA
Upstream 100 bases:
>100_bases GCATAGGCCAGGGCCTGATCCGCGTGGCCGCGGGCCTGGAACACATTGACGATTTGAAAGCCGATCTCCGCAGAGGTCTG GACGGTCTGGGCCGTTTGAA
Downstream 100 bases:
>100_bases AAAACCGCGAATTTTCGGGCTATAATTCAAGGCTCGACAACTGCTGAGAAATCTGCAGGGTTTTGGGGGTATAGCTCAGC TGGGAGAGCGCTTGCATGGC
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MTQKIRTRFAPSPTGFIHLGNIRSALYPWAFARATGGDFILRIEDTDVERSSQAAVDVIIEGMRWLGLDHDEGPFYQMQR MDRYKAVLAEMQAAGQVYPCYMSVAELDALREKQMAAKEKPRYDGTWRPEPGKTLPPIPAGVQPVLRFKNPQGGSVVWDD KVKGRIEISNDELDDLVIARPDGTPTYNFCVVVDDIDMAITHVIRGDDHVNNTPRQINIFRALGKDVPVYAHLPTVLNEQ GEKMSKRNGAKPVTQYAAEGYLPDAMVNYLARLGWSHGDDEIFSREQFLKWFNLDHLGKSAAQFDEAKLRWVNAQHLKAT ADDKLAELVQPFLAARGVGLDTARMVGGCGLFKDRCSTLVELADWLQLLVTGGQPSAQDISTHVTEAVRPALGKLADALV ACEWSKAAIAAAIKQVLAETGLKMPQLAMAVRVLVMGTPQTPSLDAILELMKREDVISRLKI
Sequences:
>Translated_462_residues MTQKIRTRFAPSPTGFIHLGNIRSALYPWAFARATGGDFILRIEDTDVERSSQAAVDVIIEGMRWLGLDHDEGPFYQMQR MDRYKAVLAEMQAAGQVYPCYMSVAELDALREKQMAAKEKPRYDGTWRPEPGKTLPPIPAGVQPVLRFKNPQGGSVVWDD KVKGRIEISNDELDDLVIARPDGTPTYNFCVVVDDIDMAITHVIRGDDHVNNTPRQINIFRALGKDVPVYAHLPTVLNEQ GEKMSKRNGAKPVTQYAAEGYLPDAMVNYLARLGWSHGDDEIFSREQFLKWFNLDHLGKSAAQFDEAKLRWVNAQHLKAT ADDKLAELVQPFLAARGVGLDTARMVGGCGLFKDRCSTLVELADWLQLLVTGGQPSAQDISTHVTEAVRPALGKLADALV ACEWSKAAIAAAIKQVLAETGLKMPQLAMAVRVLVMGTPQTPSLDAILELMKREDVISRLKI >Mature_461_residues TQKIRTRFAPSPTGFIHLGNIRSALYPWAFARATGGDFILRIEDTDVERSSQAAVDVIIEGMRWLGLDHDEGPFYQMQRM DRYKAVLAEMQAAGQVYPCYMSVAELDALREKQMAAKEKPRYDGTWRPEPGKTLPPIPAGVQPVLRFKNPQGGSVVWDDK VKGRIEISNDELDDLVIARPDGTPTYNFCVVVDDIDMAITHVIRGDDHVNNTPRQINIFRALGKDVPVYAHLPTVLNEQG EKMSKRNGAKPVTQYAAEGYLPDAMVNYLARLGWSHGDDEIFSREQFLKWFNLDHLGKSAAQFDEAKLRWVNAQHLKATA DDKLAELVQPFLAARGVGLDTARMVGGCGLFKDRCSTLVELADWLQLLVTGGQPSAQDISTHVTEAVRPALGKLADALVA CEWSKAAIAAAIKQVLAETGLKMPQLAMAVRVLVMGTPQTPSLDAILELMKREDVISRLKI
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=334, Percent_Identity=35.0299401197605, Blast_Score=202, Evalue=4e-52, Organism=Escherichia coli, GI1788743, Length=461, Percent_Identity=46.8546637744035, Blast_Score=431, Evalue=1e-122, Organism=Escherichia coli, GI226510925, Length=285, Percent_Identity=33.3333333333333, Blast_Score=131, Evalue=8e-32, Organism=Caenorhabditis elegans, GI71993394, Length=480, Percent_Identity=27.5, Blast_Score=172, Evalue=2e-43, Organism=Saccharomyces cerevisiae, GI6324540, Length=371, Percent_Identity=33.6927223719677, Blast_Score=209, Evalue=5e-55, Organism=Drosophila melanogaster, GI24665321, Length=484, Percent_Identity=28.7190082644628, Blast_Score=198, Evalue=6e-51,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_POLSJ (Q12D45)
Other databases:
- EMBL: CP000316 - RefSeq: YP_548445.1 - ProteinModelPortal: Q12D45 - SMR: Q12D45 - STRING: Q12D45 - GeneID: 4015739 - GenomeReviews: CP000316_GR - KEGG: pol:Bpro_1609 - NMPDR: fig|296591.1.peg.202 - eggNOG: COG0008 - HOGENOM: HBG628189 - OMA: LPYVMGQ - PhylomeDB: Q12D45 - ProtClustDB: PRK01406 - BioCyc: PSP296591:BPRO_1609-MONOMER - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 51204; Mature: 51073
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 246-246
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKIRTRFAPSPTGFIHLGNIRSALYPWAFARATGGDFILRIEDTDVERSSQAAVDVII CCCCHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH EGMRWLGLDHDEGPFYQMQRMDRYKAVLAEMQAAGQVYPCYMSVAELDALREKQMAAKEK HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCC PRYDGTWRPEPGKTLPPIPAGVQPVLRFKNPQGGSVVWDDKVKGRIEISNDELDDLVIAR CCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCEEECCCCCCEEEECCCCCCCEEEEC PDGTPTYNFCVVVDDIDMAITHVIRGDDHVNNTPRQINIFRALGKDVPVYAHLPTVLNEQ CCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEECCCHHHHHH GEKMSKRNGAKPVTQYAAEGYLPDAMVNYLARLGWSHGDDEIFSREQFLKWFNLDHLGKS HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHCCH AAQFDEAKLRWVNAQHLKATADDKLAELVQPFLAARGVGLDTARMVGGCGLFKDRCSTLV HHHHHHHHHEEECHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH ELADWLQLLVTGGQPSAQDISTHVTEAVRPALGKLADALVACEWSKAAIAAAIKQVLAET HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC GLKMPQLAMAVRVLVMGTPQTPSLDAILELMKREDVISRLKI CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TQKIRTRFAPSPTGFIHLGNIRSALYPWAFARATGGDFILRIEDTDVERSSQAAVDVII CCCHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHH EGMRWLGLDHDEGPFYQMQRMDRYKAVLAEMQAAGQVYPCYMSVAELDALREKQMAAKEK HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCC PRYDGTWRPEPGKTLPPIPAGVQPVLRFKNPQGGSVVWDDKVKGRIEISNDELDDLVIAR CCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCEEECCCCCCEEEECCCCCCCEEEEC PDGTPTYNFCVVVDDIDMAITHVIRGDDHVNNTPRQINIFRALGKDVPVYAHLPTVLNEQ CCCCCCEEEEEEEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEECCCHHHHHH GEKMSKRNGAKPVTQYAAEGYLPDAMVNYLARLGWSHGDDEIFSREQFLKWFNLDHLGKS HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHCCH AAQFDEAKLRWVNAQHLKATADDKLAELVQPFLAARGVGLDTARMVGGCGLFKDRCSTLV HHHHHHHHHEEECHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH ELADWLQLLVTGGQPSAQDISTHVTEAVRPALGKLADALVACEWSKAAIAAAIKQVLAET HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC GLKMPQLAMAVRVLVMGTPQTPSLDAILELMKREDVISRLKI CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA