| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is metZ [H]
Identifier: 91787492
GI number: 91787492
Start: 1659773
End: 1661008
Strand: Direct
Name: metZ [H]
Synonym: Bpro_1608
Alternate gene names: 91787492
Gene position: 1659773-1661008 (Clockwise)
Preceding gene: 91787491
Following gene: 91787493
Centisome position: 31.92
GC content: 62.94
Gene sequence:
>1236_bases ATGAGCAACAAGAAACTGCCTGAGAACCTGCACCTCGACACGCTGGCCGTGCGCGCCGCCGTCGACAAAAGCCAGTACGG CGAAAACTCCGAAGCGCTGTACCTGACCAGCAGCTTTGTGCAGCCCGATGCCGCCACTGCGGCGCGGCGCTTTGCCAATG AGGAAGAGGGCTACATCTATTCGCGCTTTACCAACCCCACGGTGACCAGCATGGAGCAGCGCCTCGCGGCGATGGAGGGA ACCGAAGCCTGCATCGGCACCTCCAGCGGCATGGCGGCCATCCTGCTGATGTGCATGGGCCTGCTCAAAAGCGGCGACCA CGTGATCTGCTCGCAGTCGGTGTTTGGCTCCACCATCAAACTGATTGGCAGCGAGTTCGGCAAGTTCGGTGTCGAAAGCA CTTTTGTGTCGCAAACCGACGTGGCCGAGTGGAGGGCGGCGATCAAGCCCAACACCAGGCTGCTGTTTGCCGAAACGCCG ACCAATCCGCTGACCGAGATATGCGACATACGCGCGCTGGCCGACATCGCGCATGCCGCAGGCGCCCTGCTGGCCGTGGA CAACTGCTTTTGCTCACCCGCGCTGCAGCAGCCCGTGAAACTGGGCGCCGACCTGATCATCCATTCAGGCACCAAATACC TCGACGGTCAGGGCCGTGTGATCGCCGGTGCGATTTGCGGCACCAGGCAACTCATTGACGACAAGCTGGTCCCCATCATG CGCAGCGCCGGCATGACGCTGTCGGCGTTCAACGCCTGGGTGGTGCTCAAGGGCCTGGAAACACTGTCCATTCGCATGCA GGCGCAAAGCGCCAATGCGCTGGCGCTGGCCACCTGGCTGGAGGCGCAACCGGGCGTGGCCCGCGTGTATTACCCGGGCC TCGAGTCGCACCCGCAATATGCGTTGGCGATGCGGCAGCAAACCATCAACGGGCAGGGCTGCGGCGGCGCGGTACTGTCG TTTGATGTCAATGGCAGCGATGTCGAAAGCGCCCGCAAAAATGCCTTCCACGTGATCGACAGCACGCAAGTCTGCAGCAT CACGGCCAACCTGGGCGACACCAAGACCACGATCACCCATCCGGCCACCACTTCGCACGGCCGGCTCAGTGAAGCGCAGC GGCAGGCCGCCGGCATAGGCCAGGGCCTGATCCGCGTGGCCGCGGGCCTGGAACACATTGACGATTTGAAAGCCGATCTC CGCAGAGGTCTGGACGGTCTGGGCCGTTTGAAATGA
Upstream 100 bases:
>100_bases GACGATTGAAAAGATGAACCAACAACGCGTGGATACCAGTGAAGAAGGCGATGTGGATGTGTCGCGCCTGGCGCTTCCCA ATCCGCAAGAGGCCTGAACG
Downstream 100 bases:
>100_bases CACAGAAAATACGAACGCGTTTTGCGCCATCGCCCACGGGCTTTATCCACCTGGGCAACATCCGCTCGGCGCTGTACCCG TGGGCATTTGCCCGCGCCAC
Product: O-succinylhomoserine sulfhydrylase
Products: Cystathionine; succinate; o-succinyl-L-homoserine; H2O [C]
Alternate protein names: OSH sulfhydrylase [H]
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MSNKKLPENLHLDTLAVRAAVDKSQYGENSEALYLTSSFVQPDAATAARRFANEEEGYIYSRFTNPTVTSMEQRLAAMEG TEACIGTSSGMAAILLMCMGLLKSGDHVICSQSVFGSTIKLIGSEFGKFGVESTFVSQTDVAEWRAAIKPNTRLLFAETP TNPLTEICDIRALADIAHAAGALLAVDNCFCSPALQQPVKLGADLIIHSGTKYLDGQGRVIAGAICGTRQLIDDKLVPIM RSAGMTLSAFNAWVVLKGLETLSIRMQAQSANALALATWLEAQPGVARVYYPGLESHPQYALAMRQQTINGQGCGGAVLS FDVNGSDVESARKNAFHVIDSTQVCSITANLGDTKTTITHPATTSHGRLSEAQRQAAGIGQGLIRVAAGLEHIDDLKADL RRGLDGLGRLK
Sequences:
>Translated_411_residues MSNKKLPENLHLDTLAVRAAVDKSQYGENSEALYLTSSFVQPDAATAARRFANEEEGYIYSRFTNPTVTSMEQRLAAMEG TEACIGTSSGMAAILLMCMGLLKSGDHVICSQSVFGSTIKLIGSEFGKFGVESTFVSQTDVAEWRAAIKPNTRLLFAETP TNPLTEICDIRALADIAHAAGALLAVDNCFCSPALQQPVKLGADLIIHSGTKYLDGQGRVIAGAICGTRQLIDDKLVPIM RSAGMTLSAFNAWVVLKGLETLSIRMQAQSANALALATWLEAQPGVARVYYPGLESHPQYALAMRQQTINGQGCGGAVLS FDVNGSDVESARKNAFHVIDSTQVCSITANLGDTKTTITHPATTSHGRLSEAQRQAAGIGQGLIRVAAGLEHIDDLKADL RRGLDGLGRLK >Mature_410_residues SNKKLPENLHLDTLAVRAAVDKSQYGENSEALYLTSSFVQPDAATAARRFANEEEGYIYSRFTNPTVTSMEQRLAAMEGT EACIGTSSGMAAILLMCMGLLKSGDHVICSQSVFGSTIKLIGSEFGKFGVESTFVSQTDVAEWRAAIKPNTRLLFAETPT NPLTEICDIRALADIAHAAGALLAVDNCFCSPALQQPVKLGADLIIHSGTKYLDGQGRVIAGAICGTRQLIDDKLVPIMR SAGMTLSAFNAWVVLKGLETLSIRMQAQSANALALATWLEAQPGVARVYYPGLESHPQYALAMRQQTINGQGCGGAVLSF DVNGSDVESARKNAFHVIDSTQVCSITANLGDTKTTITHPATTSHGRLSEAQRQAAGIGQGLIRVAAGLEHIDDLKADLR RGLDGLGRLK
Specific function: Converts O-succinylhomoserine into homocysteine [H]
COG id: COG0626
COG function: function code E; Cystathionine beta-lyases/cystathionine gamma-synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trans-sulfuration enzymes family [H]
Homologues:
Organism=Homo sapiens, GI21361334, Length=388, Percent_Identity=33.2474226804124, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI299473759, Length=387, Percent_Identity=29.7157622739018, Blast_Score=177, Evalue=1e-44, Organism=Homo sapiens, GI25453487, Length=386, Percent_Identity=27.4611398963731, Blast_Score=156, Evalue=4e-38, Organism=Escherichia coli, GI1790375, Length=394, Percent_Identity=34.5177664974619, Blast_Score=226, Evalue=3e-60, Organism=Escherichia coli, GI1789383, Length=366, Percent_Identity=26.2295081967213, Blast_Score=119, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17560056, Length=386, Percent_Identity=34.1968911917098, Blast_Score=217, Evalue=7e-57, Organism=Caenorhabditis elegans, GI17538055, Length=386, Percent_Identity=34.4559585492228, Blast_Score=215, Evalue=3e-56, Organism=Caenorhabditis elegans, GI71980708, Length=412, Percent_Identity=31.0679611650485, Blast_Score=197, Evalue=1e-50, Organism=Saccharomyces cerevisiae, GI6323333, Length=439, Percent_Identity=31.6628701594533, Blast_Score=215, Evalue=9e-57, Organism=Saccharomyces cerevisiae, GI6319307, Length=404, Percent_Identity=31.6831683168317, Blast_Score=209, Evalue=8e-55, Organism=Saccharomyces cerevisiae, GI6321254, Length=414, Percent_Identity=27.536231884058, Blast_Score=146, Evalue=6e-36, Organism=Saccharomyces cerevisiae, GI6321170, Length=280, Percent_Identity=27.5, Blast_Score=121, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6321904, Length=360, Percent_Identity=26.9444444444444, Blast_Score=101, Evalue=2e-22, Organism=Drosophila melanogaster, GI19922554, Length=354, Percent_Identity=35.5932203389831, Blast_Score=225, Evalue=3e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000277 - InterPro: IPR006234 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF01053 Cys_Met_Meta_PP [H]
EC number: 2.5.1.48 [C]
Molecular weight: Translated: 43788; Mature: 43657
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS00868 CYS_MET_METAB_PP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKKLPENLHLDTLAVRAAVDKSQYGENSEALYLTSSFVQPDAATAARRFANEEEGYIY CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEE SRFTNPTVTSMEQRLAAMEGTEACIGTSSGMAAILLMCMGLLKSGDHVICSQSVFGSTIK EEECCCHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHH LIGSEFGKFGVESTFVSQTDVAEWRAAIKPNTRLLFAETPTNPLTEICDIRALADIAHAA HHHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH GALLAVDNCFCSPALQQPVKLGADLIIHSGTKYLDGQGRVIAGAICGTRQLIDDKLVPIM HHHEEEHHHHCCHHHHHHHHCCCEEEEECCCCEECCCCCEEEEEHHCHHHHHHHHHHHHH RSAGMTLSAFNAWVVLKGLETLSIRMQAQSANALALATWLEAQPGVARVYYPGLESHPQY HHCCCEEEHHHHEEEEECCEEEEEEEEECCCCEEEEEEHHCCCCCEEEEEECCCCCCCHH ALAMRQQTINGQGCGGAVLSFDVNGSDVESARKNAFHVIDSTQVCSITANLGDTKTTITH HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCEEEECCCEEEEEEECCCCCCEEEEC PATTSHGRLSEAQRQAAGIGQGLIRVAAGLEHIDDLKADLRRGLDGLGRLK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCC >Mature Secondary Structure SNKKLPENLHLDTLAVRAAVDKSQYGENSEALYLTSSFVQPDAATAARRFANEEEGYIY CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEE SRFTNPTVTSMEQRLAAMEGTEACIGTSSGMAAILLMCMGLLKSGDHVICSQSVFGSTIK EEECCCHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHH LIGSEFGKFGVESTFVSQTDVAEWRAAIKPNTRLLFAETPTNPLTEICDIRALADIAHAA HHHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH GALLAVDNCFCSPALQQPVKLGADLIIHSGTKYLDGQGRVIAGAICGTRQLIDDKLVPIM HHHEEEHHHHCCHHHHHHHHCCCEEEEECCCCEECCCCCEEEEEHHCHHHHHHHHHHHHH RSAGMTLSAFNAWVVLKGLETLSIRMQAQSANALALATWLEAQPGVARVYYPGLESHPQY HHCCCEEEHHHHEEEEECCEEEEEEEEECCCCEEEEEEHHCCCCCEEEEEECCCCCCCHH ALAMRQQTINGQGCGGAVLSFDVNGSDVESARKNAFHVIDSTQVCSITANLGDTKTTITH HHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCEEEECCCEEEEEEECCCCCCEEEEC PATTSHGRLSEAQRQAAGIGQGLIRVAAGLEHIDDLKADLRRGLDGLGRLK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: pyridoxal 5'-phosphate [C]
Metal ions: NA
Kcat value (1/min): 460 [C]
Specific activity: 10
Km value (mM): 0.33 {O-succinyl-L-homoserine}} [C]
Substrates: O-succinyl-L-homoserine; @CYST01.txt*L-cysteine!; 2-oxobutanoate; succinate; NH3 [C]
Specific reaction: O-succinyl-L-homoserine + @CYST01.txt*L-cysteine! = cystathionine + succinate 2-oxobutanoate + succinate + NH3 = o-succinyl-L-homoserine + H2O [C]
General reaction: Elimination; Gamma-replacement [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7704274; 10984043 [H]