Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 91787470

GI number: 91787470

Start: 1634185

End: 1635045

Strand: Reverse

Name: xerD [C]

Synonym: Bpro_1585

Alternate gene names: 91787470

Gene position: 1635045-1634185 (Counterclockwise)

Preceding gene: 91787471

Following gene: 91787469

Centisome position: 31.44

GC content: 62.37

Gene sequence:

>861_bases
ATGACAGAACTACGTCAGCGCATGATCGATGCCATGGTGCAGCGCGGCTTTGCCGCACGCACCCAGGAGAGCTACATCCG
CGCCATCCGGCGCATGGCCAAGTACTACCGACGCGATCCGGCGCTGTACACGCCACAAGAGGTTCAAGCCTACCTGCTGC
ACATGGTCAAAGATGAGCAACTCTCCTACAGCAGCATGAACCAGGCCGCTTGCGCGGCACAGTTCCTGTTCCAAACCGTG
CTGGGGCACGGGCGCGAACACTTCCATGTTCCGTTTGCCAAAGTGCCCGCCAAACAACCCGAACTGCTTGCGCGCGAGGA
GATCTCGCGCCTGCTGGTAGCCTGCACCCACCCCAAGCGGCGCATGCTGCTACAAACCATCTATGCCAGTGGCTTGCGCG
TGTCTGAGGCCTGTGCGCTGCGGGTGAGCGACATCGACAGCGCGCCCGACCGCATGTGCATCCGCGTGGCCTGCGGCAAA
GGCGGCAAGGGGCGCTATAGCATTTTGAGTCCCACGCTCCTTGATCTGCTGCGTGCGTATGTGCGCAACTACCGACCCAC
CACCTGGCTGTTTGCCAACGCCAGCGGTACCCAGCCCATGAATATCGAGATCGCCCAGCGCGCCTACCACGCGGCCCGAG
CGCACGCGCTCATCACCAAGAGCGGAGGCATCCACACCCTGCGCCACTGCTTTGCGACCCATTTGCTCGAAGGCGGCGTG
GACCTCTTCACCATCCAAAAACTGCTGGGCCACGGCCACATCGCCACCACGGGACGCTATCTGCACCTGATCAGCCCCCA
GTTTCGACCACCCAAAGAACTCGATCCACTGGACTTGCTGGCCGCGCTGCGCCTGTTCTGA

Upstream 100 bases:

>100_bases
CCGCCACCGCGTTTTGCATTGGTGGGCTGCTTGCGCGGGAGAGGGTTGAGGACAAGCCTTCGGGGCGGGGAATGTTCCCC
GGCCTTCAAGGAGAAACCTC

Downstream 100 bases:

>100_bases
GATTGAGCCACCCCCGCCATGGCCACCTTGGCCGATGCGCTGCGCCAGCATGGCGCGGCGTATCTGGCAACCCATTCCCT
CTCGACCCCGCAAGCCAAAG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MTELRQRMIDAMVQRGFAARTQESYIRAIRRMAKYYRRDPALYTPQEVQAYLLHMVKDEQLSYSSMNQAACAAQFLFQTV
LGHGREHFHVPFAKVPAKQPELLAREEISRLLVACTHPKRRMLLQTIYASGLRVSEACALRVSDIDSAPDRMCIRVACGK
GGKGRYSILSPTLLDLLRAYVRNYRPTTWLFANASGTQPMNIEIAQRAYHAARAHALITKSGGIHTLRHCFATHLLEGGV
DLFTIQKLLGHGHIATTGRYLHLISPQFRPPKELDPLDLLAALRLF

Sequences:

>Translated_286_residues
MTELRQRMIDAMVQRGFAARTQESYIRAIRRMAKYYRRDPALYTPQEVQAYLLHMVKDEQLSYSSMNQAACAAQFLFQTV
LGHGREHFHVPFAKVPAKQPELLAREEISRLLVACTHPKRRMLLQTIYASGLRVSEACALRVSDIDSAPDRMCIRVACGK
GGKGRYSILSPTLLDLLRAYVRNYRPTTWLFANASGTQPMNIEIAQRAYHAARAHALITKSGGIHTLRHCFATHLLEGGV
DLFTIQKLLGHGHIATTGRYLHLISPQFRPPKELDPLDLLAALRLF
>Mature_285_residues
TELRQRMIDAMVQRGFAARTQESYIRAIRRMAKYYRRDPALYTPQEVQAYLLHMVKDEQLSYSSMNQAACAAQFLFQTVL
GHGREHFHVPFAKVPAKQPELLAREEISRLLVACTHPKRRMLLQTIYASGLRVSEACALRVSDIDSAPDRMCIRVACGKG
GKGRYSILSPTLLDLLRAYVRNYRPTTWLFANASGTQPMNIEIAQRAYHAARAHALITKSGGIHTLRHCFATHLLEGGVD
LFTIQKLLGHGHIATTGRYLHLISPQFRPPKELDPLDLLAALRLF

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=289, Percent_Identity=30.1038062283737, Blast_Score=95, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32366; Mature: 32235

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELRQRMIDAMVQRGFAARTQESYIRAIRRMAKYYRRDPALYTPQEVQAYLLHMVKDEQ
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LSYSSMNQAACAAQFLFQTVLGHGREHFHVPFAKVPAKQPELLAREEISRLLVACTHPKR
CCHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCHHH
RMLLQTIYASGLRVSEACALRVSDIDSAPDRMCIRVACGKGGKGRYSILSPTLLDLLRAY
HHHHHHHHHCCCCHHHHHHEEECCCCCCCCCEEEEEEECCCCCCCEEECCHHHHHHHHHH
VRNYRPTTWLFANASGTQPMNIEIAQRAYHAARAHALITKSGGIHTLRHCFATHLLEGGV
HHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCC
DLFTIQKLLGHGHIATTGRYLHLISPQFRPPKELDPLDLLAALRLF
HHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TELRQRMIDAMVQRGFAARTQESYIRAIRRMAKYYRRDPALYTPQEVQAYLLHMVKDEQ
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LSYSSMNQAACAAQFLFQTVLGHGREHFHVPFAKVPAKQPELLAREEISRLLVACTHPKR
CCHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCHHH
RMLLQTIYASGLRVSEACALRVSDIDSAPDRMCIRVACGKGGKGRYSILSPTLLDLLRAY
HHHHHHHHHCCCCHHHHHHEEECCCCCCCCCEEEEEEECCCCCCCEEECCHHHHHHHHHH
VRNYRPTTWLFANASGTQPMNIEIAQRAYHAARAHALITKSGGIHTLRHCFATHLLEGGV
HHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCC
DLFTIQKLLGHGHIATTGRYLHLISPQFRPPKELDPLDLLAALRLF
HHHHHHHHHCCCCEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]