Click here to switch to the map view.

The map label for this gene is rtcB [H]

Identifier: 91787367

GI number: 91787367

Start: 1524867

End: 1526099

Strand: Direct

Name: rtcB [H]

Synonym: Bpro_1473

Alternate gene names: 91787367

Gene position: 1524867-1526099 (Clockwise)

Preceding gene: 91787365

Following gene: 91787368

Centisome position: 29.32

GC content: 62.85

Gene sequence:

>1233_bases
ATGAACTACCAACAACATGACGTCCAAGGCGGCGTGCCCGTGAAGATGTGGACCAATGGCGTGCCGGTCGAGGCTCAGGC
GCTCAGGCAGCTTGAGAACTCGGCGCGCCTGCCCATCGTGTTCAGGCACGTGGCCGTGATGCCCGATGTGCACTACGGCC
TGGGTGCGACCATTGGCAGCGTGATCCCGACCTTCAAGGCCATCATTCCGGCGGCGGTCGGCGTGGACATCGGCTGCGGC
ATGATGGCCTGTAAGACCACGCTTCGCGCCGAAGACCTGCCCGACAACCTCGGGCCGCTGCGCTCGGAAATCGAAAAAGC
CGTGCCGCACGGTTCCGCACCCAAGACCTACCGCAGGAACGGATCGACGCGGGAGGTCGGCGCCTGGACCAACCCGCCAG
GCGCGGCCGATGCGGCCTGGGGCCAGCTGGTGGATGAGTTTGAAGCGCTATGCCTGGACTACCCACGCCTGAAGAACACC
AACAACCACCGCCACATGGGAACCCTGGGCGGCGGCAACCACTTCGTCGAGGTGTGCCTCGACGAAAGCGGCGGTGTGTG
GATCATGCTGCACAGCGGTTCGCGGGGGGTGGGCAACGCCATCGGTACGCACTTCATCGAACTTGCCAAGAAGGATGCCG
AGCTGCACCAGCGCAACCTGCCGGACAAGGACCTGGCTTACCTCGAGGAAGGTTCGCAGTACTTCGGCGACTATGTGCGC
GGCGTGGGCTGGGCGCAGAAGTTCGCGCGCCTGAACCGCGAGGTGATGATGCAGGCCGCGATAGGCGCGCTGCGCAAGGT
GATCAGCAAGCCCTTCGAGACGCACCTGGAAGCGGTGAATTGCCACCACAACTATGTGCAGAAGGAAACGCACTTTGGGC
AAGAGGTGTTTGTGACCCGCAAAGGAGCTGTGAGTGCCAAGGCGGGAGAGCTTGGGATCATTCCCGGGAGCATGGGCGCC
AAGAGTTTCATCGTGCGCGGCAAGGGCAATCCGGACAGCTTCATGAGCTGCAGCCACGGGGCCGGCAGGACCATGAGCCG
CACCCAGGCCAGAAAGCTGTTCACGGTGGACGACCAGATCAAGGCTACGGAAGGGGTGGAATGCCGCAAGGACGTCGAGG
TGATCGACGAGATCCCGATGGCGTACAAGGACATCGATGCCGTGATGCTCGCGCAAAGCGACCTAGTGGAAGTGGTCTAC
ACGCTCAAGCAGGTAGTGTGTGTGAAGGGCTAG

Upstream 100 bases:

>100_bases
AAAAAATGAATAACACCTTGAGACGCGAACTCGCAGCTGGATAACTCCGCAAGAGATAGCAGAAACCGTATTTGATCTGA
TGACTGATTAGGATAAGAAA

Downstream 100 bases:

>100_bases
CGTGAGACTCTCCCGAGAGGAAGGTTGCCTTGGCTCCCGGTAAGTAAGAACAAAAAAAGAAAGCAAAAAAAATGATTGAA
CTCGATGGCTCGCAAGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MNYQQHDVQGGVPVKMWTNGVPVEAQALRQLENSARLPIVFRHVAVMPDVHYGLGATIGSVIPTFKAIIPAAVGVDIGCG
MMACKTTLRAEDLPDNLGPLRSEIEKAVPHGSAPKTYRRNGSTREVGAWTNPPGAADAAWGQLVDEFEALCLDYPRLKNT
NNHRHMGTLGGGNHFVEVCLDESGGVWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYLEEGSQYFGDYVR
GVGWAQKFARLNREVMMQAAIGALRKVISKPFETHLEAVNCHHNYVQKETHFGQEVFVTRKGAVSAKAGELGIIPGSMGA
KSFIVRGKGNPDSFMSCSHGAGRTMSRTQARKLFTVDDQIKATEGVECRKDVEVIDEIPMAYKDIDAVMLAQSDLVEVVY
TLKQVVCVKG

Sequences:

>Translated_410_residues
MNYQQHDVQGGVPVKMWTNGVPVEAQALRQLENSARLPIVFRHVAVMPDVHYGLGATIGSVIPTFKAIIPAAVGVDIGCG
MMACKTTLRAEDLPDNLGPLRSEIEKAVPHGSAPKTYRRNGSTREVGAWTNPPGAADAAWGQLVDEFEALCLDYPRLKNT
NNHRHMGTLGGGNHFVEVCLDESGGVWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYLEEGSQYFGDYVR
GVGWAQKFARLNREVMMQAAIGALRKVISKPFETHLEAVNCHHNYVQKETHFGQEVFVTRKGAVSAKAGELGIIPGSMGA
KSFIVRGKGNPDSFMSCSHGAGRTMSRTQARKLFTVDDQIKATEGVECRKDVEVIDEIPMAYKDIDAVMLAQSDLVEVVY
TLKQVVCVKG
>Mature_410_residues
MNYQQHDVQGGVPVKMWTNGVPVEAQALRQLENSARLPIVFRHVAVMPDVHYGLGATIGSVIPTFKAIIPAAVGVDIGCG
MMACKTTLRAEDLPDNLGPLRSEIEKAVPHGSAPKTYRRNGSTREVGAWTNPPGAADAAWGQLVDEFEALCLDYPRLKNT
NNHRHMGTLGGGNHFVEVCLDESGGVWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYLEEGSQYFGDYVR
GVGWAQKFARLNREVMMQAAIGALRKVISKPFETHLEAVNCHHNYVQKETHFGQEVFVTRKGAVSAKAGELGIIPGSMGA
KSFIVRGKGNPDSFMSCSHGAGRTMSRTQARKLFTVDDQIKATEGVECRKDVEVIDEIPMAYKDIDAVMLAQSDLVEVVY
TLKQVVCVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=452, Percent_Identity=26.3274336283186, Blast_Score=120, Evalue=2e-27,
Organism=Escherichia coli, GI2367224, Length=415, Percent_Identity=64.578313253012, Blast_Score=559, Evalue=1e-161,
Organism=Caenorhabditis elegans, GI17506665, Length=423, Percent_Identity=27.8959810874704, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI24585217, Length=429, Percent_Identity=27.2727272727273, Blast_Score=111, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44736; Mature: 44736

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYQQHDVQGGVPVKMWTNGVPVEAQALRQLENSARLPIVFRHVAVMPDVHYGLGATIGS
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
VIPTFKAIIPAAVGVDIGCGMMACKTTLRAEDLPDNLGPLRSEIEKAVPHGSAPKTYRRN
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCC
GSTREVGAWTNPPGAADAAWGQLVDEFEALCLDYPRLKNTNNHRHMGTLGGGNHFVEVCL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEE
DESGGVWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYLEEGSQYFGDYVR
ECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GVGWAQKFARLNREVMMQAAIGALRKVISKPFETHLEAVNCHHNYVQKETHFGQEVFVTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
KGAVSAKAGELGIIPGSMGAKSFIVRGKGNPDSFMSCSHGAGRTMSRTQARKLFTVDDQI
CCCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHEEECCCCH
KATEGVECRKDVEVIDEIPMAYKDIDAVMLAQSDLVEVVYTLKQVVCVKG
HCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNYQQHDVQGGVPVKMWTNGVPVEAQALRQLENSARLPIVFRHVAVMPDVHYGLGATIGS
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
VIPTFKAIIPAAVGVDIGCGMMACKTTLRAEDLPDNLGPLRSEIEKAVPHGSAPKTYRRN
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHCC
GSTREVGAWTNPPGAADAAWGQLVDEFEALCLDYPRLKNTNNHRHMGTLGGGNHFVEVCL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEE
DESGGVWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYLEEGSQYFGDYVR
ECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
GVGWAQKFARLNREVMMQAAIGALRKVISKPFETHLEAVNCHHNYVQKETHFGQEVFVTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
KGAVSAKAGELGIIPGSMGAKSFIVRGKGNPDSFMSCSHGAGRTMSRTQARKLFTVDDQI
CCCCCCCCCCEEECCCCCCCCEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHEEECCCCH
KATEGVECRKDVEVIDEIPMAYKDIDAVMLAQSDLVEVVYTLKQVVCVKG
HCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]