| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yiaN [C]
Identifier: 91787351
GI number: 91787351
Start: 1507121
End: 1508380
Strand: Direct
Name: yiaN [C]
Synonym: Bpro_1457
Alternate gene names: 91787351
Gene position: 1507121-1508380 (Clockwise)
Preceding gene: 91787350
Following gene: 91787352
Centisome position: 28.98
GC content: 64.29
Gene sequence:
>1260_bases ATGAGCGCGCTCATCCTCCTGGTGTTCCTGGGCGCTGCCACGGCAGCGGTACCGATTGCACATGCGCTGCTGATGGCCTC GGTGGCAGCCGCCACGGTCTCGGAGCGCATCCCGCTGGATCTGGTCGTGCAGCAGATGGTGGCGCAGGTCCAGAGCTTCC CGCTGATTGCCATTCCCTTCTTCATGCTCACCGGAACCCTGATGATGGGCGGCAAGCTCGGTGAATCCCTGATCGGCGTG CTGTCCACGCTGATTGGCCGCTTTCACGGCGGGCCGGGCCAGGTGGGCGTGCTGTCGTCCACCATTTTTGGCGGTGTCTC CGGCTCGGCGGTCGCCGACGCGTCCGCCATCGGTTCGCTGCTGCTTCCCTGGCAGAAGCGGCTGGGCTATCCGCCCGCAT TCTCCGCCGCCACGCTGGCCGCGGCCGCAACGATTGACATCCTGATTCCGCCATCGATTCCGATGATCCTGTTCGCGCTG ACGTCCAATGCGTCGATCGCGGCGCTATTCGTCGCCGGCATTTTGCCGGGGCTGATGATGTGTGCCGGTTTCATGGGAGT CTGCTGGTGTGTTGGCAAGCGCCGCAATTTTCCGCGAGAGACGCGCCCGATCGACTGGCCGGTATTTCGCAAGCAGCTGG CCTACGCTTCGCCCGCGCTGGTGCTGCCGGTGCTGATCGTGATCTTCCTGCGCTTCGGTATTGCCACGCCCACCGAGGTC AGTGTCCTGTCCACCGCCTACTCGGGCCTGATTTCCGCGCTGATTTACCGCGATCTGAGCATCAGGCGCCTGCACTCGGC CATCGTGGAGGCGGGTCTGGCCACGGGCGTGGTGCTGCTGGTGATCATGGCTTCGGCGTCGGTCGGGTGGTTGCTGACCT TCGACCACATGCCCGACGGCGTGGTGCACTGGGCCCAGGCTCACCTGCACGCCGACTGGGCCGTGATCCTGCTGATGAAC GGCCTCATGCTGGTTGCCGGCATGTTCATCGACCTGCCGGCTGCGGTGCTGCTGCTCACGCCGGTGTTCGTGCCTCTGGC CAACAGCATCGGCATGGACCTGGTGCAGCTCGGCATCATGATGACGGTGAACCTTGCCATCGGGCTGTACACGCCCCCGG TGGGGACGACGCTGTTCATCACCAGTTCGGTCGCCAGGGTCAAGGTGGGGGAAACCGTGCGCGAGCTGATCCCCTTCTAT TGTGTGGCGTTCATCATCCTGCTGATTGTTTCGTACGTTCCGGCGTCGATCCTGCGTTGA
Upstream 100 bases:
>100_bases TCATGCTGGCCGTGCTGGCCCTGCAGTCCGCATGGCAGGTCTGGACGCAGGGTGTCGAGGCGGCCGGCGCTGCTGGCCAG ACTCACCTGGTGAGCAGCAC
Downstream 100 bases:
>100_bases GGTCCCGTCAATGAACCCGATCCCCTACCGCAAGGAACGCATTGTTTCCATTTCGGGCGCCCCCTACGACGGGCATCCGG TGCCGGCCATGCTGGCCAGC
Product: TRAP dicarboxylate transporter subunit DctM
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MSALILLVFLGAATAAVPIAHALLMASVAAATVSERIPLDLVVQQMVAQVQSFPLIAIPFFMLTGTLMMGGKLGESLIGV LSTLIGRFHGGPGQVGVLSSTIFGGVSGSAVADASAIGSLLLPWQKRLGYPPAFSAATLAAAATIDILIPPSIPMILFAL TSNASIAALFVAGILPGLMMCAGFMGVCWCVGKRRNFPRETRPIDWPVFRKQLAYASPALVLPVLIVIFLRFGIATPTEV SVLSTAYSGLISALIYRDLSIRRLHSAIVEAGLATGVVLLVIMASASVGWLLTFDHMPDGVVHWAQAHLHADWAVILLMN GLMLVAGMFIDLPAAVLLLTPVFVPLANSIGMDLVQLGIMMTVNLAIGLYTPPVGTTLFITSSVARVKVGETVRELIPFY CVAFIILLIVSYVPASILR
Sequences:
>Translated_419_residues MSALILLVFLGAATAAVPIAHALLMASVAAATVSERIPLDLVVQQMVAQVQSFPLIAIPFFMLTGTLMMGGKLGESLIGV LSTLIGRFHGGPGQVGVLSSTIFGGVSGSAVADASAIGSLLLPWQKRLGYPPAFSAATLAAAATIDILIPPSIPMILFAL TSNASIAALFVAGILPGLMMCAGFMGVCWCVGKRRNFPRETRPIDWPVFRKQLAYASPALVLPVLIVIFLRFGIATPTEV SVLSTAYSGLISALIYRDLSIRRLHSAIVEAGLATGVVLLVIMASASVGWLLTFDHMPDGVVHWAQAHLHADWAVILLMN GLMLVAGMFIDLPAAVLLLTPVFVPLANSIGMDLVQLGIMMTVNLAIGLYTPPVGTTLFITSSVARVKVGETVRELIPFY CVAFIILLIVSYVPASILR >Mature_418_residues SALILLVFLGAATAAVPIAHALLMASVAAATVSERIPLDLVVQQMVAQVQSFPLIAIPFFMLTGTLMMGGKLGESLIGVL STLIGRFHGGPGQVGVLSSTIFGGVSGSAVADASAIGSLLLPWQKRLGYPPAFSAATLAAAATIDILIPPSIPMILFALT SNASIAALFVAGILPGLMMCAGFMGVCWCVGKRRNFPRETRPIDWPVFRKQLAYASPALVLPVLIVIFLRFGIATPTEVS VLSTAYSGLISALIYRDLSIRRLHSAIVEAGLATGVVLLVIMASASVGWLLTFDHMPDGVVHWAQAHLHADWAVILLMNG LMLVAGMFIDLPAAVLLLTPVFVPLANSIGMDLVQLGIMMTVNLAIGLYTPPVGTTLFITSSVARVKVGETVRELIPFYC VAFIILLIVSYVPASILR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yiaN/ygiK family [H]
Homologues:
Organism=Escherichia coli, GI48994950, Length=399, Percent_Identity=35.3383458646617, Blast_Score=196, Evalue=3e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010656 - InterPro: IPR004681 [H]
Pfam domain/function: PF06808 DctM [H]
EC number: NA
Molecular weight: Translated: 44125; Mature: 43994
Theoretical pI: Translated: 8.62; Mature: 8.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALILLVFLGAATAAVPIAHALLMASVAAATVSERIPLDLVVQQMVAQVQSFPLIAIPF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH FMLTGTLMMGGKLGESLIGVLSTLIGRFHGGPGQVGVLSSTIFGGVSGSAVADASAIGSL HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH LLPWQKRLGYPPAFSAATLAAAATIDILIPPSIPMILFALTSNASIAALFVAGILPGLMM HHHHHHHCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH CAGFMGVCWCVGKRRNFPRETRPIDWPVFRKQLAYASPALVLPVLIVIFLRFGIATPTEV HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH SVLSTAYSGLISALIYRDLSIRRLHSAIVEAGLATGVVLLVIMASASVGWLLTFDHMPDG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH VVHWAQAHLHADWAVILLMNGLMLVAGMFIDLPAAVLLLTPVFVPLANSIGMDLVQLGIM HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH MTVNLAIGLYTPPVGTTLFITSSVARVKVGETVRELIPFYCVAFIILLIVSYVPASILR HHHHHHHEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SALILLVFLGAATAAVPIAHALLMASVAAATVSERIPLDLVVQQMVAQVQSFPLIAIPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHH FMLTGTLMMGGKLGESLIGVLSTLIGRFHGGPGQVGVLSSTIFGGVSGSAVADASAIGSL HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH LLPWQKRLGYPPAFSAATLAAAATIDILIPPSIPMILFALTSNASIAALFVAGILPGLMM HHHHHHHCCCCCCCHHHHHHHHHHEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH CAGFMGVCWCVGKRRNFPRETRPIDWPVFRKQLAYASPALVLPVLIVIFLRFGIATPTEV HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHH SVLSTAYSGLISALIYRDLSIRRLHSAIVEAGLATGVVLLVIMASASVGWLLTFDHMPDG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH VVHWAQAHLHADWAVILLMNGLMLVAGMFIDLPAAVLLLTPVFVPLANSIGMDLVQLGIM HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH MTVNLAIGLYTPPVGTTLFITSSVARVKVGETVRELIPFYCVAFIILLIVSYVPASILR HHHHHHHEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]