| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787352
Identifier: 91787352
GI number: 91787352
Start: 1508391
End: 1509266
Strand: Direct
Name: 91787352
Synonym: Bpro_1458
Alternate gene names: NA
Gene position: 1508391-1509266 (Clockwise)
Preceding gene: 91787351
Following gene: 91787353
Centisome position: 29.01
GC content: 66.89
Gene sequence:
>876_bases ATGAACCCGATCCCCTACCGCAAGGAACGCATTGTTTCCATTTCGGGCGCCCCCTACGACGGGCATCCGGTGCCGGCCAT GCTGGCCAGCATGGCCGCCTGCGGCGCCCGTCATATCGAGCCGGCCTTCATCGTCGGTTACACGGAGGCCTTCGACGAAA CGGCATTCGTACCCGCGCAGGCACAGCAGTGGCGACACTGGCTGGCCGACGCCGGTATGGCCTGCCATGCGATGTCGTCG CACATTGACCTGGGCCGCGATGACGCTGTCGAGGTGTTTCGCGGCCGGATGGATTTCGCCCGCGCCCTGGGCGCCGAGGT GATCAATACCAATGCCGCGGCGCGCAAGCTCAAGAAGCGGTTTTTCACCAATATCGAGGTGCTCGCCCGCCATGCGGAGT CCATCGGCCTGCGTATCGGCCTGGAAAATCCCGGCGACGGCTCCGACAACCTGCTCAACACGGCCGCGGACGGCCCCGGT CTGCTGGCCGATATTGGTCACCCCATGGTGGGCCTGAACTACGACGCGGGCAACACCATTTCGCACCGGCCTGGCGTGAC GCCTGCGGACGACGCACTGGCAGCCATGCCGCAGTGCCTGCACACCCACATCAAGGATGTGCGCAAGGACGACAACGGCT ACTTCTTCACCCCGCTGGGCCAGGGCCAGATTGACTGCGCGCGCATCCTGCACGCCGTCGCGCAAACCGCGCTCAACCTG TCCGTCGAGATACCGCTGCGCCTGCACCGCCAGCCCAGTGCCCAGCCCAGCCGCGCGCCCTACCGCGTGCCGCTGGCTGA CATCGAGGCGGTGCTGCGGCCCGCGCTGGCCTTTGTCCATGAACACCTGGGCGCGCCGTCTGCGACCCGCCTCTGA
Upstream 100 bases:
>100_bases GAAACCGTGCGCGAGCTGATCCCCTTCTATTGTGTGGCGTTCATCATCCTGCTGATTGTTTCGTACGTTCCGGCGTCGAT CCTGCGTTGAGGTCCCGTCA
Downstream 100 bases:
>100_bases CGACGGAGCTTTCTCGTGAATCGTGTAATCAACAATCCGGACCTTGTGGTCGAGGACATGCTCAAGGGCTGGCTGCTGGC GCATGCCGACACTGTGCGCA
Product: xylose isomerase-like protein TIM barrel
Products: NA
Alternate protein names: Xylose Isomerase-Like; Xylose Isomerase-Like TIM Barrel; Hydroxypyruvate Isomerase
Number of amino acids: Translated: 291; Mature: 291
Protein sequence:
>291_residues MNPIPYRKERIVSISGAPYDGHPVPAMLASMAACGARHIEPAFIVGYTEAFDETAFVPAQAQQWRHWLADAGMACHAMSS HIDLGRDDAVEVFRGRMDFARALGAEVINTNAAARKLKKRFFTNIEVLARHAESIGLRIGLENPGDGSDNLLNTAADGPG LLADIGHPMVGLNYDAGNTISHRPGVTPADDALAAMPQCLHTHIKDVRKDDNGYFFTPLGQGQIDCARILHAVAQTALNL SVEIPLRLHRQPSAQPSRAPYRVPLADIEAVLRPALAFVHEHLGAPSATRL
Sequences:
>Translated_291_residues MNPIPYRKERIVSISGAPYDGHPVPAMLASMAACGARHIEPAFIVGYTEAFDETAFVPAQAQQWRHWLADAGMACHAMSS HIDLGRDDAVEVFRGRMDFARALGAEVINTNAAARKLKKRFFTNIEVLARHAESIGLRIGLENPGDGSDNLLNTAADGPG LLADIGHPMVGLNYDAGNTISHRPGVTPADDALAAMPQCLHTHIKDVRKDDNGYFFTPLGQGQIDCARILHAVAQTALNL SVEIPLRLHRQPSAQPSRAPYRVPLADIEAVLRPALAFVHEHLGAPSATRL >Mature_291_residues MNPIPYRKERIVSISGAPYDGHPVPAMLASMAACGARHIEPAFIVGYTEAFDETAFVPAQAQQWRHWLADAGMACHAMSS HIDLGRDDAVEVFRGRMDFARALGAEVINTNAAARKLKKRFFTNIEVLARHAESIGLRIGLENPGDGSDNLLNTAADGPG LLADIGHPMVGLNYDAGNTISHRPGVTPADDALAAMPQCLHTHIKDVRKDDNGYFFTPLGQGQIDCARILHAVAQTALNL SVEIPLRLHRQPSAQPSRAPYRVPLADIEAVLRPALAFVHEHLGAPSATRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31448; Mature: 31448
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPIPYRKERIVSISGAPYDGHPVPAMLASMAACGARHIEPAFIVGYTEAFDETAFVPAQ CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCCHH AQQWRHWLADAGMACHAMSSHIDLGRDDAVEVFRGRMDFARALGAEVINTNAAARKLKKR HHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH FFTNIEVLARHAESIGLRIGLENPGDGSDNLLNTAADGPGLLADIGHPMVGLNYDAGNTI HHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHCCCCCCHHHHCCCCEEEEECCCCCCC SHRPGVTPADDALAAMPQCLHTHIKDVRKDDNGYFFTPLGQGQIDCARILHAVAQTALNL CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC SVEIPLRLHRQPSAQPSRAPYRVPLADIEAVLRPALAFVHEHLGAPSATRL EEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNPIPYRKERIVSISGAPYDGHPVPAMLASMAACGARHIEPAFIVGYTEAFDETAFVPAQ CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCCHH AQQWRHWLADAGMACHAMSSHIDLGRDDAVEVFRGRMDFARALGAEVINTNAAARKLKKR HHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH FFTNIEVLARHAESIGLRIGLENPGDGSDNLLNTAADGPGLLADIGHPMVGLNYDAGNTI HHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHCCCCCCHHHHCCCCEEEEECCCCCCC SHRPGVTPADDALAAMPQCLHTHIKDVRKDDNGYFFTPLGQGQIDCARILHAVAQTALNL CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC SVEIPLRLHRQPSAQPSRAPYRVPLADIEAVLRPALAFVHEHLGAPSATRL EEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA