| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ureC [H]
Identifier: 91787245
GI number: 91787245
Start: 1387424
End: 1389142
Strand: Reverse
Name: ureC [H]
Synonym: Bpro_1350
Alternate gene names: 91787245
Gene position: 1389142-1387424 (Counterclockwise)
Preceding gene: 91787246
Following gene: 91787244
Centisome position: 26.71
GC content: 63.64
Gene sequence:
>1719_bases ATGGCAACCATTGGCAGACGCGCCTATGCGGAAATGTTTGGCCCCACCGCGGGTGACCGCCTGCGGCTGGCCGACACCGA CCTGGTGGTGGAGGTGGAAGCCGACTACACGCTGCGCGCCGGCAGCTACGGCGAAGAAGTGAAATTCGGCGGCGGCAAGA CCATTCGCGACGGCATGGCGCAGTCGCAAAAAACCCGCGCCGAAGGGGCGATGGACACGGTGATGACCAACGCCCTCATC ATGGACCACTGGGGCATCGTCAAGGCCGATATCGGCCTCAAAGGCGGCCGCATCGCCGTCATTGGCAAGGCCGGCAACCC CGACACCCAACCCGGCGTGGACATGATCATTGGCCCCGGTACCGAGATCATCAGCTGCGAAGGCATGATCGTCACCGCCG GCGGCATCGACTCGCACATCCACTTCATTTGCCCGCAGCAGATTGAAGAAGCCCTCACCTCGGGCGTGACGACCATGCTG GGCGGCGGCACCGGCCCGGCCACCGGCACCTTTGCCACCACTTGCACACCCGGCCCCTGGAACATCGAGCGCATGCTGCA GGCGGCGGACGCCTTCCCGATGAACCTGGGCTTTCTGGGCAAGGGCAACGCCAGCCTGCCCGCCGCGCTGCACGAGCAGA TCAACGCCGGCGTGATTGGCCTGAAGCTGCATGAAGACTGGGGCACCACGCCGGCCGCCATCAGCAACTGCCTGGATGTG GCAGAAGAAACCGACACGCAGGTGGCGATTCACAGCGACACGCTCAATGAATCGGGCTTTGTCGAAAACACGATTGCCGC CACCAAGGGCCGCACGCTCTGCGCCTTTCACACCGAAGGCGCCGGCGGCGGCCATGCGCCCGATATTTTGCGGGTGGTCG GCGAGCAGAACTTTTTGCCGTCTTCCACCAACCCGACCATGCCCTACACGGTCAACACGCTGGACGAGCATGTCGACATG CTGATGGTGTGCCACCACCTCGACGCGGGCATTGCCGAAGACCTGGCCTTTGCCGAAAGCCGCATCCGCAAGGAAACCAT CGCGGCGGAAGACATCCTGCACGACCTGGGCGCGATCAGCATGTTCAGCTCCGACAGCCAGGCCATGGGCCGGGTTGGCG AAGTCATCATCCGCACCTGGCAGACCGCGCACAAGATGAAGCAGCAGCGCGGCAAACTGCCCGGCGACAGCGACCGCCAC GACAACTTCCGCGCCAAGCGCTACATCAGCAAATACACCATCAACCCGGCCATCGCGCACGGTATCTCGCATGAGGTGGG CTCGGTTGAACCGGGCAAATGGGCCGACCTGGTGGTGTGGAAGCCGGCGTTTTTTGGCATCAAGCCGTCCGTCATCCTCA AGGGCGGCTTCATCGCGATGGCGGCCATGGGCGACCCGAATGCGTCGATACCTACGCCGCAGCCGGTGCATTACCGCCCC ATGTTTGGCGGCTTTGGCGGCGCCATTGCCAAAGGCTCCCTCACTTTCGTGTCGCAGGCCGGGCTCAATGCGGACATCCA GAAACGTTTCGGGCTGGCCAAAACGCTCAGCGCCGTCAAGAACATCCGCGGGGTGCGCAAGCAGCACATGATCCACAACG ACTATGCGCCGAAAATGGAAGTCGATGCCCAGACTTACCTGGTGCGCGCCGACGGGCTGCTGCTGACCTGCGAACCGGCA GTCAGCCTGCCGATGACGCAGCGCTACTTCCTGTTCTGA
Upstream 100 bases:
>100_bases AACTGGTGGACTATGCGGGCGAGCGCAAGGTGTTTGGCTTCCGGGGCCTGGTGCAGGGTGGCCTGGACGCATCCGGGCAG AGTCACAAGGAAACGACGTA
Downstream 100 bases:
>100_bases CCAACGAGTCATGGCCGCCCGGGCCAGCCGCTGGGTGGGTGTGCTGCGTTCAACCCTTGTTTACGCAGGGCTTGCCGCGC TGGCATACTCGTTTTTTTAA
Product: urease subunit alpha
Products: NA
Alternate protein names: Urea amidohydrolase subunit alpha [H]
Number of amino acids: Translated: 572; Mature: 571
Protein sequence:
>572_residues MATIGRRAYAEMFGPTAGDRLRLADTDLVVEVEADYTLRAGSYGEEVKFGGGKTIRDGMAQSQKTRAEGAMDTVMTNALI MDHWGIVKADIGLKGGRIAVIGKAGNPDTQPGVDMIIGPGTEIISCEGMIVTAGGIDSHIHFICPQQIEEALTSGVTTML GGGTGPATGTFATTCTPGPWNIERMLQAADAFPMNLGFLGKGNASLPAALHEQINAGVIGLKLHEDWGTTPAAISNCLDV AEETDTQVAIHSDTLNESGFVENTIAATKGRTLCAFHTEGAGGGHAPDILRVVGEQNFLPSSTNPTMPYTVNTLDEHVDM LMVCHHLDAGIAEDLAFAESRIRKETIAAEDILHDLGAISMFSSDSQAMGRVGEVIIRTWQTAHKMKQQRGKLPGDSDRH DNFRAKRYISKYTINPAIAHGISHEVGSVEPGKWADLVVWKPAFFGIKPSVILKGGFIAMAAMGDPNASIPTPQPVHYRP MFGGFGGAIAKGSLTFVSQAGLNADIQKRFGLAKTLSAVKNIRGVRKQHMIHNDYAPKMEVDAQTYLVRADGLLLTCEPA VSLPMTQRYFLF
Sequences:
>Translated_572_residues MATIGRRAYAEMFGPTAGDRLRLADTDLVVEVEADYTLRAGSYGEEVKFGGGKTIRDGMAQSQKTRAEGAMDTVMTNALI MDHWGIVKADIGLKGGRIAVIGKAGNPDTQPGVDMIIGPGTEIISCEGMIVTAGGIDSHIHFICPQQIEEALTSGVTTML GGGTGPATGTFATTCTPGPWNIERMLQAADAFPMNLGFLGKGNASLPAALHEQINAGVIGLKLHEDWGTTPAAISNCLDV AEETDTQVAIHSDTLNESGFVENTIAATKGRTLCAFHTEGAGGGHAPDILRVVGEQNFLPSSTNPTMPYTVNTLDEHVDM LMVCHHLDAGIAEDLAFAESRIRKETIAAEDILHDLGAISMFSSDSQAMGRVGEVIIRTWQTAHKMKQQRGKLPGDSDRH DNFRAKRYISKYTINPAIAHGISHEVGSVEPGKWADLVVWKPAFFGIKPSVILKGGFIAMAAMGDPNASIPTPQPVHYRP MFGGFGGAIAKGSLTFVSQAGLNADIQKRFGLAKTLSAVKNIRGVRKQHMIHNDYAPKMEVDAQTYLVRADGLLLTCEPA VSLPMTQRYFLF >Mature_571_residues ATIGRRAYAEMFGPTAGDRLRLADTDLVVEVEADYTLRAGSYGEEVKFGGGKTIRDGMAQSQKTRAEGAMDTVMTNALIM DHWGIVKADIGLKGGRIAVIGKAGNPDTQPGVDMIIGPGTEIISCEGMIVTAGGIDSHIHFICPQQIEEALTSGVTTMLG GGTGPATGTFATTCTPGPWNIERMLQAADAFPMNLGFLGKGNASLPAALHEQINAGVIGLKLHEDWGTTPAAISNCLDVA EETDTQVAIHSDTLNESGFVENTIAATKGRTLCAFHTEGAGGGHAPDILRVVGEQNFLPSSTNPTMPYTVNTLDEHVDML MVCHHLDAGIAEDLAFAESRIRKETIAAEDILHDLGAISMFSSDSQAMGRVGEVIIRTWQTAHKMKQQRGKLPGDSDRHD NFRAKRYISKYTINPAIAHGISHEVGSVEPGKWADLVVWKPAFFGIKPSVILKGGFIAMAAMGDPNASIPTPQPVHYRPM FGGFGGAIAKGSLTFVSQAGLNADIQKRFGLAKTLSAVKNIRGVRKQHMIHNDYAPKMEVDAQTYLVRADGLLLTCEPAV SLPMTQRYFLF
Specific function: Unknown
COG id: COG0804
COG function: function code E; Urea amidohydrolase (urease) alpha subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 urease domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR011059 - InterPro: IPR011612 - InterPro: IPR005848 - InterPro: IPR017951 - InterPro: IPR017950 [H]
Pfam domain/function: PF01979 Amidohydro_1; PF00449 Urease_alpha [H]
EC number: =3.5.1.5 [H]
Molecular weight: Translated: 61170; Mature: 61038
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: PS01120 UREASE_1 ; PS00145 UREASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIGRRAYAEMFGPTAGDRLRLADTDLVVEVEADYTLRAGSYGEEVKFGGGKTIRDGMA CCCCCHHHHHHHHCCCCCCEEEEECCCEEEEEECCEEEECCCCCCEEEECCCCHHHHHHH QSQKTRAEGAMDTVMTNALIMDHWGIVKADIGLKGGRIAVIGKAGNPDTQPGVDMIIGPG HHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECCC TEIISCEGMIVTAGGIDSHIHFICPQQIEEALTSGVTTMLGGGTGPATGTFATTCTPGPW CCEEEECCEEEEECCCCCCEEEECHHHHHHHHHCCCCEECCCCCCCCCCCEEEECCCCCC NIERMLQAADAFPMNLGFLGKGNASLPAALHEQINAGVIGLKLHEDWGTTPAAISNCLDV CHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH AEETDTQVAIHSDTLNESGFVENTIAATKGRTLCAFHTEGAGGGHAPDILRVVGEQNFLP HHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCC SSTNPTMPYTVNTLDEHVDMLMVCHHLDAGIAEDLAFAESRIRKETIAAEDILHDLGAIS CCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MFSSDSQAMGRVGEVIIRTWQTAHKMKQQRGKLPGDSDRHDNFRAKRYISKYTINPAIAH EECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEECCHHHHH GISHEVGSVEPGKWADLVVWKPAFFGIKPSVILKGGFIAMAAMGDPNASIPTPQPVHYRP CCCCCCCCCCCCCCEEEEEECCHHHCCCCCEEEECCEEEEEEECCCCCCCCCCCCCEECC MFGGFGGAIAKGSLTFVSQAGLNADIQKRFGLAKTLSAVKNIRGVRKQHMIHNDYAPKME CCCCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE VDAQTYLVRADGLLLTCEPAVSLPMTQRYFLF ECCEEEEEEECCEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure ATIGRRAYAEMFGPTAGDRLRLADTDLVVEVEADYTLRAGSYGEEVKFGGGKTIRDGMA CCCCHHHHHHHHCCCCCCEEEEECCCEEEEEECCEEEECCCCCCEEEECCCCHHHHHHH QSQKTRAEGAMDTVMTNALIMDHWGIVKADIGLKGGRIAVIGKAGNPDTQPGVDMIIGPG HHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECCC TEIISCEGMIVTAGGIDSHIHFICPQQIEEALTSGVTTMLGGGTGPATGTFATTCTPGPW CCEEEECCEEEEECCCCCCEEEECHHHHHHHHHCCCCEECCCCCCCCCCCEEEECCCCCC NIERMLQAADAFPMNLGFLGKGNASLPAALHEQINAGVIGLKLHEDWGTTPAAISNCLDV CHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH AEETDTQVAIHSDTLNESGFVENTIAATKGRTLCAFHTEGAGGGHAPDILRVVGEQNFLP HHCCCCEEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCC SSTNPTMPYTVNTLDEHVDMLMVCHHLDAGIAEDLAFAESRIRKETIAAEDILHDLGAIS CCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MFSSDSQAMGRVGEVIIRTWQTAHKMKQQRGKLPGDSDRHDNFRAKRYISKYTINPAIAH EECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHEECCHHHHH GISHEVGSVEPGKWADLVVWKPAFFGIKPSVILKGGFIAMAAMGDPNASIPTPQPVHYRP CCCCCCCCCCCCCCEEEEEECCHHHCCCCCEEEECCEEEEEEECCCCCCCCCCCCCEECC MFGGFGGAIAKGSLTFVSQAGLNADIQKRFGLAKTLSAVKNIRGVRKQHMIHNDYAPKME CCCCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE VDAQTYLVRADGLLLTCEPAVSLPMTQRYFLF ECCEEEEEEECCEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA