| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787185
Identifier: 91787185
GI number: 91787185
Start: 1331033
End: 1331596
Strand: Reverse
Name: 91787185
Synonym: Bpro_1289
Alternate gene names: NA
Gene position: 1331596-1331033 (Counterclockwise)
Preceding gene: 91787186
Following gene: 91787184
Centisome position: 25.61
GC content: 60.99
Gene sequence:
>564_bases ATGTCAACCGACACCTTGCAGCCTCCGGTCGCCCTGGGCCGGGACATTGACCGGTCTGCCTACGCCCGATGGCTGGGAAA GCTGACGGATGGTATTTGCGGCCTGACGGCTGCCGGGACTGTACTGGTGGTTCTGACGCAGGTGATCAGCCGCCTGCTGG GTGCACCGATCTCCTGGACCGAGGAACTGACCCGAGCCTTGTTCATCTGGATGATATTTATCGGCCTGGCGACGAGCATG CGACACGCCGACGCAGCCCGTGTGACCATCTTCATGGAAACCCTGCCCCGCTCATTAAGGCGGCTCGCACTGCCGATCTA CCTCTTCTGCTGCCTGGGTTTTTTCGCGCTGATGGGCTGGACGGGCGCCACCATGGTACGCCAGCAAATACTGATGAATG AATCCATCGCCACGCTGGGCTGGCCCAGCTGGGTCATTGGCCTGGTCATGCCAGTCTCCGCGATTTTGGCCATTCTCTGC ACGCTGGAGTCCTTGCGCCAGCACCGCGCCGCCATCGCTCTCGATCCTTCGAAAGCCACACCCAAACAGGAAGCTGCATC ATGA
Upstream 100 bases:
>100_bases AAAAAGTGAGCAGCAACCGGCCCATATCTTCCAAACCAGTCTGGTATCCCGGGTCATGAGCATCCAGGATTCCAGTCGGC GAAAAAAGGAACATTCCGTC
Downstream 100 bases:
>100_bases GTATCGCGCTGCTGCTGATTTTTCTCGTCCTGTCGGCGCTTGGCGTCCCGCTGGCCATTGCGTTGGGCCTGTCCGGCGTG GCCAGCGTCTTCATGTTCAC
Product: tripartite ATP-independent periplasmic transporter DctQ
Products: NA
Alternate protein names: ABC Transporter Membrane Spanning Protein
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MSTDTLQPPVALGRDIDRSAYARWLGKLTDGICGLTAAGTVLVVLTQVISRLLGAPISWTEELTRALFIWMIFIGLATSM RHADAARVTIFMETLPRSLRRLALPIYLFCCLGFFALMGWTGATMVRQQILMNESIATLGWPSWVIGLVMPVSAILAILC TLESLRQHRAAIALDPSKATPKQEAAS
Sequences:
>Translated_187_residues MSTDTLQPPVALGRDIDRSAYARWLGKLTDGICGLTAAGTVLVVLTQVISRLLGAPISWTEELTRALFIWMIFIGLATSM RHADAARVTIFMETLPRSLRRLALPIYLFCCLGFFALMGWTGATMVRQQILMNESIATLGWPSWVIGLVMPVSAILAILC TLESLRQHRAAIALDPSKATPKQEAAS >Mature_186_residues STDTLQPPVALGRDIDRSAYARWLGKLTDGICGLTAAGTVLVVLTQVISRLLGAPISWTEELTRALFIWMIFIGLATSMR HADAARVTIFMETLPRSLRRLALPIYLFCCLGFFALMGWTGATMVRQQILMNESIATLGWPSWVIGLVMPVSAILAILCT LESLRQHRAAIALDPSKATPKQEAAS
Specific function: Unknown
COG id: COG3090
COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20445; Mature: 20313
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDTLQPPVALGRDIDRSAYARWLGKLTDGICGLTAAGTVLVVLTQVISRLLGAPISWT CCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH EELTRALFIWMIFIGLATSMRHADAARVTIFMETLPRSLRRLALPIYLFCCLGFFALMGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TGATMVRQQILMNESIATLGWPSWVIGLVMPVSAILAILCTLESLRQHRAAIALDPSKAT CHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC PKQEAAS CCCCCCC >Mature Secondary Structure STDTLQPPVALGRDIDRSAYARWLGKLTDGICGLTAAGTVLVVLTQVISRLLGAPISWT CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH EELTRALFIWMIFIGLATSMRHADAARVTIFMETLPRSLRRLALPIYLFCCLGFFALMGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TGATMVRQQILMNESIATLGWPSWVIGLVMPVSAILAILCTLESLRQHRAAIALDPSKAT CHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC PKQEAAS CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA