| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91787163
Identifier: 91787163
GI number: 91787163
Start: 1308808
End: 1309407
Strand: Reverse
Name: 91787163
Synonym: Bpro_1266
Alternate gene names: NA
Gene position: 1309407-1308808 (Counterclockwise)
Preceding gene: 91787164
Following gene: 91787162
Centisome position: 25.18
GC content: 65.5
Gene sequence:
>600_bases ATGGAAAATGAAGTCAAACTGGCCGCTGGCGCGATGGTCGCACTCGCCATCGCCACCGCAGCGCTGGTCGTGATGCCCTA CATCCAGGTACGCGATGTCAAACCACCGGCGGGCCTCAAGCCTTATACCGACCAGCAGCTGCGCGGGCGAGAGGTGTACA TCGCCAACGGCTGCGTGTATTGCCACAGCCAGCAGCCGCGCGACCGCAATCTGGCGCCCGACCACACGCGCGGCTGGGGC CGCCCTTCGGTGCCGGCCGATTATGTGTACGACAAACCGCACCTGCTGGGCAGCATGCGCACCGGGCCGGACCTCTTCAA CATCGGCGCGCGCCAGCCCAGCAAGGACTGGCATCTGGGCCACCTGTACCAGCCGCGTGCCTATGTGCCCGACTCCATCA TGCCGTCGTATCCCTACATGTTTCTGGTCAAGGACGCGGCTGAAGAAGGCGACCAGGTGGTGACGCTGCCGCCGGTCTAC GCGCCTTTTGGCAAGGTCGTGGTGGCCCGGCCGGAGGCACTGGATCTGGTCAAGTACCTGCAGGCGCTGAACCACACCTA CCCCATCCTGCCGGCACCGGCCGTACCGGCAGCGCCTTGA
Upstream 100 bases:
>100_bases GGGCATCTGGTGTTTGTGGGCCACTTCCTGGCGATGGCGCTGCGTTTCGGCCCTGACCGAACCGGTGCGGCATTGTTCAT GCAACCCCGGGAGGCCGCGC
Downstream 100 bases:
>100_bases TGCACCCGAGGAGATTTTCATGGTGACCCCTGACCCACGGCAGCACCCGGCGGCGCAGCAACGCGAAACGGGAGACCCCT CCGAGCAGGTGCAGCCCATG
Product: cytochrome C oxidase, mono-heme subunit/FixO
Products: NA
Alternate protein names: Cbb3-Type Cytochrome C Oxidase Subunit II; Cytochrome C Oxidase Mono-Heme Subunit/FixO; Cytochrome C Oxidase Cbb3-Type Subunit I; Cbb3-Type Cytochrome Oxidase Cytochrome C Subunit; Cb-Type Cytochrome C Oxidase Subunit II; Bifunctional Cbb3-Type Cytochrome C Oxidase Subunit I/II; Cytochrome C Oxidase; Cytochrome C Oxidase Subunit CcoO; Cytochrome Oxidase Subunit; Cytochrome C Oxidase Subunit; Cytochrome-C Oxidase FixO Chain; Cytochrome C Oxidase Mono-Heme Subunit/FixO Superfamily; Cytochrome C Oxidase Mono-Heme Subunit/Fixo; Cytochrome-C Oxidase Subunit II; Bifunctional Cytochrome C Oxidase Subunit SccoN/O; Cytochrome-Cbb3 Oxidase Subunit I; Transmembrane Cytochrome C Oxidase FixO Protein; Cbb3-Type Cytochrome Oxidase; Cbb3-Type Cytochrome C Oxidase Subunit CcoO; Cbb3-Type Cytochrome C Oxidase Subunit I + II; Cytochrome Oxidase; Cytochrome C Oxidase Mono-Heme Subunit; Cytochrome C Oxidase Cbb3-Type; Cytochrome C Oxidase Cbb3-Type Mono-Heme Subunit II; Cytochrome Cbb3 Oxidase Subunit I/III; Cytochrome Oxidase Cytochrome C Subunit; Cytochrome C Oxidase Subunit CcoN; Cytochrome C Oxidase Family Protein; Cytochrome C Oxidase Cbb3-Type Subunit I/Mono-Heme Subunit; Cytochrome C Oxidase FixO Chain; Cytochrome-Cbb3 Oxidase Subunit II; Cytochrome C Family Protein; Cytochrome C Oxidase CcoO Subunit; Cbb3-Type Cytochrome C Oxidase Subunits CcoN/CcoO; Cytochrome C Oxidase Cbb3-Type Subunit I And II
Number of amino acids: Translated: 199; Mature: 199
Protein sequence:
>199_residues MENEVKLAAGAMVALAIATAALVVMPYIQVRDVKPPAGLKPYTDQQLRGREVYIANGCVYCHSQQPRDRNLAPDHTRGWG RPSVPADYVYDKPHLLGSMRTGPDLFNIGARQPSKDWHLGHLYQPRAYVPDSIMPSYPYMFLVKDAAEEGDQVVTLPPVY APFGKVVVARPEALDLVKYLQALNHTYPILPAPAVPAAP
Sequences:
>Translated_199_residues MENEVKLAAGAMVALAIATAALVVMPYIQVRDVKPPAGLKPYTDQQLRGREVYIANGCVYCHSQQPRDRNLAPDHTRGWG RPSVPADYVYDKPHLLGSMRTGPDLFNIGARQPSKDWHLGHLYQPRAYVPDSIMPSYPYMFLVKDAAEEGDQVVTLPPVY APFGKVVVARPEALDLVKYLQALNHTYPILPAPAVPAAP >Mature_199_residues MENEVKLAAGAMVALAIATAALVVMPYIQVRDVKPPAGLKPYTDQQLRGREVYIANGCVYCHSQQPRDRNLAPDHTRGWG RPSVPADYVYDKPHLLGSMRTGPDLFNIGARQPSKDWHLGHLYQPRAYVPDSIMPSYPYMFLVKDAAEEGDQVVTLPPVY APFGKVVVARPEALDLVKYLQALNHTYPILPAPAVPAAP
Specific function: Unknown
COG id: COG2993
COG function: function code C; Cbb3-type cytochrome oxidase, cytochrome c subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21942; Mature: 21942
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENEVKLAAGAMVALAIATAALVVMPYIQVRDVKPPAGLKPYTDQQLRGREVYIANGCVY CCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCEEE CHSQQPRDRNLAPDHTRGWGRPSVPADYVYDKPHLLGSMRTGPDLFNIGARQPSKDWHLG ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCC HLYQPRAYVPDSIMPSYPYMFLVKDAAEEGDQVVTLPPVYAPFGKVVVARPEALDLVKYL EEECCCCCCCCCCCCCCCEEEEEECCHHCCCEEEEECCCCCCCCCEEEECCHHHHHHHHH QALNHTYPILPAPAVPAAP HHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MENEVKLAAGAMVALAIATAALVVMPYIQVRDVKPPAGLKPYTDQQLRGREVYIANGCVY CCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCEEE CHSQQPRDRNLAPDHTRGWGRPSVPADYVYDKPHLLGSMRTGPDLFNIGARQPSKDWHLG ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCC HLYQPRAYVPDSIMPSYPYMFLVKDAAEEGDQVVTLPPVYAPFGKVVVARPEALDLVKYL EEECCCCCCCCCCCCCCCEEEEEECCHHCCCEEEEECCCCCCCCCEEEECCHHHHHHHHH QALNHTYPILPAPAVPAAP HHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA