| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ynbB [H]
Identifier: 91786982
GI number: 91786982
Start: 1116852
End: 1117832
Strand: Reverse
Name: ynbB [H]
Synonym: Bpro_1084
Alternate gene names: 91786982
Gene position: 1117832-1116852 (Counterclockwise)
Preceding gene: 91786983
Following gene: 91786981
Centisome position: 21.5
GC content: 61.26
Gene sequence:
>981_bases ATGAACACCTTTCTGCGCAACCTGACACCCGGCCAGCAGGTGGGCCTGCTGTTTGTGGTGGTTTTTGGCCTGCTTCTCAT CATCAGCGTGGCTGCGTTTGTCTTGTCGCTGCAGGACCGGCACGAGGATGACCTGCACACGCAAAAGCTCAAGGATTTCA ATGGCCTGCTGAGAACCTCGTGGGTGATGTGCATGGTGTTCTGGGTCGGCTGGACCCTGGGTGAAACCGCGGCCACGGTG CTGTTTGGCCTGGTGGCCTTTTTTGCGCTGCGCGAATTCATCACGCTCTCGCCGACCCGGCAGGGCGATCACCGCAGCCT GGTGCTGGCTTTTTTTGTGGTGCTGCCCGCGCAGTTTGCCCTGGTCATCACCCGGCATTTCGACCTCGTCACCGTGTTCA TCCCGGTTTATGTGTTCCTGGCAATTCCAGTCGTCAGCGCGCTGGCGGATGACCCGCACCGCTTCCTGGAGCGCAACGCC AAATTGCAGTGGGGCATCATGGTCTGCGTCTACGGCATCAGCCATGTGCCGGCCCTGCTGCTGCTGAAGTTTCCGAATTA CCAGGGCAAGAATGCCTTCCTCGTGTTTTTCCTGGTGTTTGTCGTGCAGAGCTGCATGATCGTGCAGCACCTGGCCAGCC GCCGGCTGGCGCGGGCGCCGATTGCGCCCAACGTGAGCAAAAGCTTTGAATGGACCAGCTGGCTGACCGCCGTGGTCGTG GCCAGCCTGGTCGGCGGCCTGATGGCGGGCCTGACGCCCTTCAAGCCGGCCCAGGCGGTGGCCATGGCCCTGATCGCCTG CGTGGCCGGCTCCATGGGCCACCTGGTGATGAAGGCCCTCAAACGCGACCGCGGGATTACCAACTGGGGTTCGGAAGGAA AATCAGTCACCGGCGCCAGCGGTTTGCTGGACCGCGTCGATGCCCTGTGTTTTGCCGCACCGATATTCTTCCATTCGGTT CGATGGTATTTTGGCCTCTAG
Upstream 100 bases:
>100_bases CATCGCGGTGGGCGCCGGGGAAGACCGAGGCAGTTTTCTGGCCCGCGCGCGCCAGGCCGTCATGGACCTGCGGCAAACCT GATCAAGCACGGATGCTCCG
Downstream 100 bases:
>100_bases CCCTTTCATTTCACTTTCATTTCAAATCCTGCGCAAGCAGCTACCAAATTTATAGCCTATGCGTATTCTTGGAATTGACC CTGGCTTGCAGATCGCCGGA
Product: phosphatidate cytidylyltransferase
Products: diphosphate; CDPdiacylglycerol
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MNTFLRNLTPGQQVGLLFVVVFGLLLIISVAAFVLSLQDRHEDDLHTQKLKDFNGLLRTSWVMCMVFWVGWTLGETAATV LFGLVAFFALREFITLSPTRQGDHRSLVLAFFVVLPAQFALVITRHFDLVTVFIPVYVFLAIPVVSALADDPHRFLERNA KLQWGIMVCVYGISHVPALLLLKFPNYQGKNAFLVFFLVFVVQSCMIVQHLASRRLARAPIAPNVSKSFEWTSWLTAVVV ASLVGGLMAGLTPFKPAQAVAMALIACVAGSMGHLVMKALKRDRGITNWGSEGKSVTGASGLLDRVDALCFAAPIFFHSV RWYFGL
Sequences:
>Translated_326_residues MNTFLRNLTPGQQVGLLFVVVFGLLLIISVAAFVLSLQDRHEDDLHTQKLKDFNGLLRTSWVMCMVFWVGWTLGETAATV LFGLVAFFALREFITLSPTRQGDHRSLVLAFFVVLPAQFALVITRHFDLVTVFIPVYVFLAIPVVSALADDPHRFLERNA KLQWGIMVCVYGISHVPALLLLKFPNYQGKNAFLVFFLVFVVQSCMIVQHLASRRLARAPIAPNVSKSFEWTSWLTAVVV ASLVGGLMAGLTPFKPAQAVAMALIACVAGSMGHLVMKALKRDRGITNWGSEGKSVTGASGLLDRVDALCFAAPIFFHSV RWYFGL >Mature_326_residues MNTFLRNLTPGQQVGLLFVVVFGLLLIISVAAFVLSLQDRHEDDLHTQKLKDFNGLLRTSWVMCMVFWVGWTLGETAATV LFGLVAFFALREFITLSPTRQGDHRSLVLAFFVVLPAQFALVITRHFDLVTVFIPVYVFLAIPVVSALADDPHRFLERNA KLQWGIMVCVYGISHVPALLLLKFPNYQGKNAFLVFFLVFVVQSCMIVQHLASRRLARAPIAPNVSKSFEWTSWLTAVVV ASLVGGLMAGLTPFKPAQAVAMALIACVAGSMGHLVMKALKRDRGITNWGSEGKSVTGASGLLDRVDALCFAAPIFFHSV RWYFGL
Specific function: Unknown
COG id: COG4589
COG function: function code R; Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI1787677, Length=244, Percent_Identity=34.8360655737705, Blast_Score=112, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: 2.7.7.41
Molecular weight: Translated: 36046; Mature: 36046
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTFLRNLTPGQQVGLLFVVVFGLLLIISVAAFVLSLQDRHEDDLHTQKLKDFNGLLRTS CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH WVMCMVFWVGWTLGETAATVLFGLVAFFALREFITLSPTRQGDHRSLVLAFFVVLPAQFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH LVITRHFDLVTVFIPVYVFLAIPVVSALADDPHRFLERNAKLQWGIMVCVYGISHVPALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LLKFPNYQGKNAFLVFFLVFVVQSCMIVQHLASRRLARAPIAPNVSKSFEWTSWLTAVVV HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH ASLVGGLMAGLTPFKPAQAVAMALIACVAGSMGHLVMKALKRDRGITNWGSEGKSVTGAS HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH GLLDRVDALCFAAPIFFHSVRWYFGL HHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNTFLRNLTPGQQVGLLFVVVFGLLLIISVAAFVLSLQDRHEDDLHTQKLKDFNGLLRTS CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH WVMCMVFWVGWTLGETAATVLFGLVAFFALREFITLSPTRQGDHRSLVLAFFVVLPAQFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH LVITRHFDLVTVFIPVYVFLAIPVVSALADDPHRFLERNAKLQWGIMVCVYGISHVPALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LLKFPNYQGKNAFLVFFLVFVVQSCMIVQHLASRRLARAPIAPNVSKSFEWTSWLTAVVV HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH ASLVGGLMAGLTPFKPAQAVAMALIACVAGSMGHLVMKALKRDRGITNWGSEGKSVTGAS HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH GLLDRVDALCFAAPIFFHSVRWYFGL HHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: CTP; phosphatidate
Specific reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503; 9097039 [H]