| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786959
Identifier: 91786959
GI number: 91786959
Start: 1088476
End: 1090374
Strand: Reverse
Name: 91786959
Synonym: Bpro_1061
Alternate gene names: NA
Gene position: 1090374-1088476 (Counterclockwise)
Preceding gene: 91786981
Following gene: 91786955
Centisome position: 20.97
GC content: 65.19
Gene sequence:
>1899_bases ATGCCAATTTCCAGAAAAGTTTGCGACAATCGCCGGTTAATGATTTTTGATTACTTTCCAGAGCAGTTAAGGCAGTTGAG GAATTGCAAGCCATTCGCCGGCTTTGCAAATCGCCTGTTCGCCCCGGCTATCCGGGCCCGCCTTGCGGCGCTGGCCTTGA GCCTGCTGGCGGGATCGCTACTGGCGTTGACCACCCTGGAGGCGCACCCGCGCACAGTACTCGACCTGGACACCCAAACC CAGCCGGTTCCGCTGGCGGACTGGGGTGACTACTGGATTGACAGCAGCGGCAGGTTCACGCCGGAACAGGTCTCCACTAC ACACGATATCCCATGGAAGCCGACGAGCGGCGAGTCCATTTACCCGGTCACCAGCGACTATCCCCTGTGGATCCGCTTCA ATGTGCCTCCCGCACCGGACGCCGAGCGCTGGTACCTCGAAGTACCCTACCCGTCCGTCAACCGCGCCTCCCTGTACACC ATGGACAGCGCCGGCAAGTGGAATGAACAGAGGGCGGGCGATCTGGTGGCCGTCAACAAATGGCCGGTACCGCACCGCCA TCCGCTACTGCCCATCGCCCTGTCCGCTGAAGTGCCCACCAACTACCTGTTGCGCCTGGAAAACGGACACGCCCTGAGCG CCCCCCTGCGGTTCATCAGCGAAGGACGCCTGAGCTACTCCGAGCAGCGCATCTCGCTGATCCTGGGCATCTTCTTCGGG CTGACGGGCCTGGCCGCGCTGGTGTCGCTGCTGAGCGCCATCTCGCTGAGGGACAGTGCCTACGGCCTGTACGCCCTGTG CGTCGCGCTGATGGGCCTCACGCAAGCGACCCTGACGGGCATAGGCGGCCTGCACCTCTGGCCCCATTGGCCCTGGTGGA ACGATGTGTCCACCTCGGTCCTGCCCATGCTGACGGCCTCGGCCACGCTGCTCTTCATCTCGGCTACCGTGGCGCTGCCC GAGCGCCTGCCCCGACTGCACTGGCTGATGGTCGGCCAGGCGGCGCTGGGCGTGGCGGTCGCCGCAGTGCTGGCCGTGAT GCCAGTCGCATCGCGCATGGACCTCTTTATTCCTGCCTTGCTGCTGCTGGAGTTCAGCGGCATGGTGGTCATGGCATGGG CCTGGCGGCGCGGTGACCGGTTTGCGCCCTGGCTGATGCTGGCCTACCTGCCCGTGACGGTAGCAGCCGGCTGGACAGTA GCGCGCAATGCCGACCTGGTGCCGATCGGCTTCCTCACACAGCACGGCATGCAGCTGGGCGTGGCCCTGCACCTGCCCAT CGTCATGGTGCTGCTGATGCTGCGCAGCCAGCACCGGCGCGAAAACACCCGCCGCATCCAGGGCCTGGACCGGGTCGACC CCGCCACCGGCCTGATCAACAACCATGTGTTCGGCGAACGGCTGATCCGCATGATCGCGCGCTCCGAGCGGCTGCAGCAC CAAAGCGCCGTGATGCTGATTGACGTGATCAACAGCGCGCAAATTCAGGAAGATTTCGGACGCACGGCGGCCGTTGAGCT GCCACTGCGCGTTGCCGAGCGGCTGCTGTCTGCCGCCCGTGAAATCGATAGCGCGGCGCGGCTGTCGGAGCAGCGCTTCG GCATGCTGGTGGAAGGCCCCATCAGCCCGGAAGACGCCGCCATTCTCGCCCAGCGCATCGTCGCGCGTTGCCTCATGCCC TACAAGGGCCTGCATGTGAACTGTGTGGCCCAGGTTCACGTGGCTTACGCCATTGTGCCTTCCCAGGGCTCGTACGCGCA GGGCCTGCTGACCCAGTTGCAGGAGCGGCTGGCCACGGTGCCCGCGCAAGGCAAGCGTGCGGTGTTCCTGCTGGGTGAAA CGCCTCCCGCGGCGCCTGTGCGGCAAGCCTACAGCCGCAAAGTCGCCAAAGTCGCCTGA
Upstream 100 bases:
>100_bases TCGTGGTTTGAATCTGGACCCCTGCGGCCCCAAACCGGCTGCCCGCTGGCCCAAAGCGACCGCTGCACTCAATTTCAGCA CTTTCCCCCCAATTCAGGGG
Downstream 100 bases:
>100_bases CCGCGCAAGGGCGGGCAAATCAAGCCAGGGGCGCGGGCGGTTCAGGGAGCTCAGTAGCTCAGGACTGGCTCATGGCTTGT CGGGCCCGCACCCCACCCCT
Product: diguanylate cyclase
Products: NA
Alternate protein names: Periplasmic/7TM Domain Sensor Diguanylate Cyclase; Sensor Histidine Kinase/Response Regulator; Response Regulator Receiver Domain-Containing Protein; Ggdef Family Protein; Diguanylate Cyclase/Phosphodiesterase; Response Regulator; PAS/PAC Domain-Containing Protein; EAL/GGDEF Domain-Containing Protein; 7TM Domain Sensor Diguanylate Cyclase; Lost Adherence Sensor LadS; Two-Component Sensor; Two-Component System Sensor Kinase; Sensory Box Protein; Diverse 7TM Receptor Transmembrane Region; Ggef/Eal/Pas/Pac-Domain Containing Protein; 7TM Diverse Intracellular Signalling Domain Protein; Signal Transduction Domain Protein
Number of amino acids: Translated: 632; Mature: 631
Protein sequence:
>632_residues MPISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSLLALTTLEAHPRTVLDLDTQT QPVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESIYPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYT MDSAGKWNEQRAGDLVAVNKWPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFG LTGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSVLPMLTASATLLFISATVALP ERLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPALLLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTV ARNADLVPIGFLTQHGMQLGVALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQH QSAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGPISPEDAAILAQRIVARCLMP YKGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATVPAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA
Sequences:
>Translated_632_residues MPISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSLLALTTLEAHPRTVLDLDTQT QPVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESIYPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYT MDSAGKWNEQRAGDLVAVNKWPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFG LTGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSVLPMLTASATLLFISATVALP ERLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPALLLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTV ARNADLVPIGFLTQHGMQLGVALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQH QSAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGPISPEDAAILAQRIVARCLMP YKGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATVPAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA >Mature_631_residues PISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSLLALTTLEAHPRTVLDLDTQTQ PVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESIYPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYTM DSAGKWNEQRAGDLVAVNKWPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFGL TGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSVLPMLTASATLLFISATVALPE RLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPALLLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTVA RNADLVPIGFLTQHGMQLGVALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQHQ SAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGPISPEDAAILAQRIVARCLMPY KGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATVPAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69842; Mature: 69711
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSL CCCCCCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LALTTLEAHPRTVLDLDTQTQPVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESI HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCEE YPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYTMDSAGKWNEQRAGDLVAVNK EEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEC WPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFG CCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LTGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSV HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH LPMLTASATLLFISATVALPERLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPAL HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTVARNADLVPIGFLTQHGMQLG HHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEHHHHHCCHHHH VALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQH HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH QSAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGP HHHEEEEEHHCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC ISPEDAAILAQRIVARCLMPYKGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATV CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCC PAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA CCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure PISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSL CCCCCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LALTTLEAHPRTVLDLDTQTQPVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESI HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCEE YPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYTMDSAGKWNEQRAGDLVAVNK EEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEC WPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFG CCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LTGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSV HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH LPMLTASATLLFISATVALPERLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPAL HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTVARNADLVPIGFLTQHGMQLG HHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEHHHHHCCHHHH VALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQH HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH QSAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGP HHHEEEEEHHCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC ISPEDAAILAQRIVARCLMPYKGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATV CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCC PAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA CCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA