Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91786959

Identifier: 91786959

GI number: 91786959

Start: 1088476

End: 1090374

Strand: Reverse

Name: 91786959

Synonym: Bpro_1061

Alternate gene names: NA

Gene position: 1090374-1088476 (Counterclockwise)

Preceding gene: 91786981

Following gene: 91786955

Centisome position: 20.97

GC content: 65.19

Gene sequence:

>1899_bases
ATGCCAATTTCCAGAAAAGTTTGCGACAATCGCCGGTTAATGATTTTTGATTACTTTCCAGAGCAGTTAAGGCAGTTGAG
GAATTGCAAGCCATTCGCCGGCTTTGCAAATCGCCTGTTCGCCCCGGCTATCCGGGCCCGCCTTGCGGCGCTGGCCTTGA
GCCTGCTGGCGGGATCGCTACTGGCGTTGACCACCCTGGAGGCGCACCCGCGCACAGTACTCGACCTGGACACCCAAACC
CAGCCGGTTCCGCTGGCGGACTGGGGTGACTACTGGATTGACAGCAGCGGCAGGTTCACGCCGGAACAGGTCTCCACTAC
ACACGATATCCCATGGAAGCCGACGAGCGGCGAGTCCATTTACCCGGTCACCAGCGACTATCCCCTGTGGATCCGCTTCA
ATGTGCCTCCCGCACCGGACGCCGAGCGCTGGTACCTCGAAGTACCCTACCCGTCCGTCAACCGCGCCTCCCTGTACACC
ATGGACAGCGCCGGCAAGTGGAATGAACAGAGGGCGGGCGATCTGGTGGCCGTCAACAAATGGCCGGTACCGCACCGCCA
TCCGCTACTGCCCATCGCCCTGTCCGCTGAAGTGCCCACCAACTACCTGTTGCGCCTGGAAAACGGACACGCCCTGAGCG
CCCCCCTGCGGTTCATCAGCGAAGGACGCCTGAGCTACTCCGAGCAGCGCATCTCGCTGATCCTGGGCATCTTCTTCGGG
CTGACGGGCCTGGCCGCGCTGGTGTCGCTGCTGAGCGCCATCTCGCTGAGGGACAGTGCCTACGGCCTGTACGCCCTGTG
CGTCGCGCTGATGGGCCTCACGCAAGCGACCCTGACGGGCATAGGCGGCCTGCACCTCTGGCCCCATTGGCCCTGGTGGA
ACGATGTGTCCACCTCGGTCCTGCCCATGCTGACGGCCTCGGCCACGCTGCTCTTCATCTCGGCTACCGTGGCGCTGCCC
GAGCGCCTGCCCCGACTGCACTGGCTGATGGTCGGCCAGGCGGCGCTGGGCGTGGCGGTCGCCGCAGTGCTGGCCGTGAT
GCCAGTCGCATCGCGCATGGACCTCTTTATTCCTGCCTTGCTGCTGCTGGAGTTCAGCGGCATGGTGGTCATGGCATGGG
CCTGGCGGCGCGGTGACCGGTTTGCGCCCTGGCTGATGCTGGCCTACCTGCCCGTGACGGTAGCAGCCGGCTGGACAGTA
GCGCGCAATGCCGACCTGGTGCCGATCGGCTTCCTCACACAGCACGGCATGCAGCTGGGCGTGGCCCTGCACCTGCCCAT
CGTCATGGTGCTGCTGATGCTGCGCAGCCAGCACCGGCGCGAAAACACCCGCCGCATCCAGGGCCTGGACCGGGTCGACC
CCGCCACCGGCCTGATCAACAACCATGTGTTCGGCGAACGGCTGATCCGCATGATCGCGCGCTCCGAGCGGCTGCAGCAC
CAAAGCGCCGTGATGCTGATTGACGTGATCAACAGCGCGCAAATTCAGGAAGATTTCGGACGCACGGCGGCCGTTGAGCT
GCCACTGCGCGTTGCCGAGCGGCTGCTGTCTGCCGCCCGTGAAATCGATAGCGCGGCGCGGCTGTCGGAGCAGCGCTTCG
GCATGCTGGTGGAAGGCCCCATCAGCCCGGAAGACGCCGCCATTCTCGCCCAGCGCATCGTCGCGCGTTGCCTCATGCCC
TACAAGGGCCTGCATGTGAACTGTGTGGCCCAGGTTCACGTGGCTTACGCCATTGTGCCTTCCCAGGGCTCGTACGCGCA
GGGCCTGCTGACCCAGTTGCAGGAGCGGCTGGCCACGGTGCCCGCGCAAGGCAAGCGTGCGGTGTTCCTGCTGGGTGAAA
CGCCTCCCGCGGCGCCTGTGCGGCAAGCCTACAGCCGCAAAGTCGCCAAAGTCGCCTGA

Upstream 100 bases:

>100_bases
TCGTGGTTTGAATCTGGACCCCTGCGGCCCCAAACCGGCTGCCCGCTGGCCCAAAGCGACCGCTGCACTCAATTTCAGCA
CTTTCCCCCCAATTCAGGGG

Downstream 100 bases:

>100_bases
CCGCGCAAGGGCGGGCAAATCAAGCCAGGGGCGCGGGCGGTTCAGGGAGCTCAGTAGCTCAGGACTGGCTCATGGCTTGT
CGGGCCCGCACCCCACCCCT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Periplasmic/7TM Domain Sensor Diguanylate Cyclase; Sensor Histidine Kinase/Response Regulator; Response Regulator Receiver Domain-Containing Protein; Ggdef Family Protein; Diguanylate Cyclase/Phosphodiesterase; Response Regulator; PAS/PAC Domain-Containing Protein; EAL/GGDEF Domain-Containing Protein; 7TM Domain Sensor Diguanylate Cyclase; Lost Adherence Sensor LadS; Two-Component Sensor; Two-Component System Sensor Kinase; Sensory Box Protein; Diverse 7TM Receptor Transmembrane Region; Ggef/Eal/Pas/Pac-Domain Containing Protein; 7TM Diverse Intracellular Signalling Domain Protein; Signal Transduction Domain Protein

Number of amino acids: Translated: 632; Mature: 631

Protein sequence:

>632_residues
MPISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSLLALTTLEAHPRTVLDLDTQT
QPVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESIYPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYT
MDSAGKWNEQRAGDLVAVNKWPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFG
LTGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSVLPMLTASATLLFISATVALP
ERLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPALLLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTV
ARNADLVPIGFLTQHGMQLGVALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQH
QSAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGPISPEDAAILAQRIVARCLMP
YKGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATVPAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA

Sequences:

>Translated_632_residues
MPISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSLLALTTLEAHPRTVLDLDTQT
QPVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESIYPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYT
MDSAGKWNEQRAGDLVAVNKWPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFG
LTGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSVLPMLTASATLLFISATVALP
ERLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPALLLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTV
ARNADLVPIGFLTQHGMQLGVALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQH
QSAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGPISPEDAAILAQRIVARCLMP
YKGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATVPAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA
>Mature_631_residues
PISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSLLALTTLEAHPRTVLDLDTQTQ
PVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESIYPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYTM
DSAGKWNEQRAGDLVAVNKWPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFGL
TGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSVLPMLTASATLLFISATVALPE
RLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPALLLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTVA
RNADLVPIGFLTQHGMQLGVALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQHQ
SAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGPISPEDAAILAQRIVARCLMPY
KGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATVPAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69842; Mature: 69711

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSL
CCCCCCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALTTLEAHPRTVLDLDTQTQPVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESI
HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCEE
YPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYTMDSAGKWNEQRAGDLVAVNK
EEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEC
WPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFG
CCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LTGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LPMLTASATLLFISATVALPERLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPAL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTVARNADLVPIGFLTQHGMQLG
HHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEHHHHHCCHHHH
VALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
QSAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGP
HHHEEEEEHHCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
ISPEDAAILAQRIVARCLMPYKGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATV
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCC
PAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PISRKVCDNRRLMIFDYFPEQLRQLRNCKPFAGFANRLFAPAIRARLAALALSLLAGSL
CCCCCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALTTLEAHPRTVLDLDTQTQPVPLADWGDYWIDSSGRFTPEQVSTTHDIPWKPTSGESI
HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCEE
YPVTSDYPLWIRFNVPPAPDAERWYLEVPYPSVNRASLYTMDSAGKWNEQRAGDLVAVNK
EEECCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEC
WPVPHRHPLLPIALSAEVPTNYLLRLENGHALSAPLRFISEGRLSYSEQRISLILGIFFG
CCCCCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LTGLAALVSLLSAISLRDSAYGLYALCVALMGLTQATLTGIGGLHLWPHWPWWNDVSTSV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LPMLTASATLLFISATVALPERLPRLHWLMVGQAALGVAVAAVLAVMPVASRMDLFIPAL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLEFSGMVVMAWAWRRGDRFAPWLMLAYLPVTVAAGWTVARNADLVPIGFLTQHGMQLG
HHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEHHHHHCCHHHH
VALHLPIVMVLLMLRSQHRRENTRRIQGLDRVDPATGLINNHVFGERLIRMIARSERLQH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH
QSAVMLIDVINSAQIQEDFGRTAAVELPLRVAERLLSAAREIDSAARLSEQRFGMLVEGP
HHHEEEEEHHCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
ISPEDAAILAQRIVARCLMPYKGLHVNCVAQVHVAYAIVPSQGSYAQGLLTQLQERLATV
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCC
PAQGKRAVFLLGETPPAAPVRQAYSRKVAKVA
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA