| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ycbL [C]
Identifier: 91786953
GI number: 91786953
Start: 1081498
End: 1083150
Strand: Reverse
Name: ycbL [C]
Synonym: Bpro_1055
Alternate gene names: 91786953
Gene position: 1083150-1081498 (Counterclockwise)
Preceding gene: 91786955
Following gene: 91786952
Centisome position: 20.83
GC content: 69.15
Gene sequence:
>1653_bases ATGACAAGACCCTCCCAACTCCTTTACCCCCAGCGGGAACCCGCCCCCACCCGCCCGGCAGCCACGGTGCTGTTGCTGCG CGACACAGCGCAGGGCCTGGAAGTGCTGATGACACGGCGTTCGATGACCGCCAGCTTTGCCCCCGGCGCCTATGTGTTCC CAGGCGGCGGCATTGACGCGGCGGATGCCCAAGCGCATGGCCAGTCCACGCGGCGGCCCGGCCAGAGTGACCTGCATCTG ACGCAGGCGATTGCCGCCATCCGGGAGAGCTTTGAAGAGCTGGGCGTGCTGCTGGCGCGCCATGCCGACGGCCGCTACGC CAGCACGGCCGACATCGCGGCGCTGGACCGCCAGGCTCCGTTTGCCGCCCAGTGCGGCCAGCGCGGTCTCACGCTGGCCG GTGACCAGGTGTTTGTGCTGGCCCACTGGGTGACCGACCGCGATTTGCCGCGCCGCTTCGATGTGCCCTTTCTGGTGGCG CGCATGCCGGAGGGCCAGAGCCCGGTGGCAGACGAAACCGAGCAGTTCGAGCCGGTCTGGGTGCGCCCGGCCGAGGCGCT GGCCCGGCACCATGCCGGCGGCTTCTTCATGATCTTCCCGACCCTGCGCACACTGGAGAGGCTGCAGCATTACCCCGATG TCGATGCGGTGCTCCAGGCTTGCGCGCTGGAGGCGCCGCTGTGGACATCCTGCCCGCGCGCCGGCTTGCTGGCCGGCAAG GAGGCGCGCTACATGGAACACGAGGCGCCCTACGGCGAGCTGGCGCTCACCTCGCCCGACGGGCAGATCGTGCACACGCT GGACTGGCAAACGGCGCAGCCCGTGGCACTGCTGAGAAACCTGATGCGCCTGACCGCACCCAACCCCGGCGTGATGACCG GGCCGGGCACCAACAGCTACCTCGTCGGCGAGCCTGCCACCGGCTACATCGCGATTGATCCGGGACCTGCCGATGCGGAT CACCTGGACCGGCTGTACCGGGCGGCCGGCGGCGATATCCGCCTGATCGTCTGCACCCACTCGCACCCCGACCATTCGCC GGGCGCCAAGCCATTGCAAGCGCTGTGCAACACCCGGCCCGCCATCGTCGGCTTGCCCTCGGAGCCCACGGCACGCGCCC ACAGCGCGTTCACGCCGGACCGGGCGCTGGAGCATCAGGAGTTGCTCGCGCTGGTGGCGCCCGGGCCTGAGGGCGACATA ACGCATACCCTGAAAGTGCTGCACACCCCCGGGCATGCCGCCAATCATGTGTGCCTGGTGCTGCTGGAAGACGGCATCCT GTTCAGCGGCGACCACATCCTCAACGGCAGCACCACGGTGGTGGACCCGCCGGACGGCAACATGAGCGCCTACCTCGACT CCCTGGATCTGCTGAGCAGCGCCTGCGACCAGCACCAGATCGAATTCATCGCCCCGGCCCACGGCTATGTGCTGGGGCAT GCGAAAGCCGCCATTGCCCAGCTCAAGGCGCACCGCCTCAAGCGCGAGGCCAAGATCGTCGGCGTGATGCAGGCGCAGCC CGACGGGACACTGGACGACTGGGTCGCCCAGGCCTACGACGACGTCGATGCACGCATCTGGCCGGTGGCCAAGCGCTCCC TGCTGGCGCATATCGAGCGGGTGCGCGAACTGGGGCTGGCCGGCCCGCTTTGA
Upstream 100 bases:
>100_bases ACCAATTCGAATTCCGATTCCAGTTGTCGGATGCCGCTGGCCGGACCCGAAGTAAGCCGGCGGGACAGCGCCTCCCCCTC TTTCACTGCAAAATCGGGTC
Downstream 100 bases:
>100_bases GGCCAGTCCCAAACTGCAACTGGCCCCCATACTGTTCAGTCACGTTATTCACACTGAATCGGAATGACCAGAACCTTGAC TTGTCATTGCGAGCCTGACC
Product: beta-lactamase-like protein
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Domain Protein; Hydrolase; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Beta-Lactamase Family Protein; NUDIX Family Hydrolase; NUDIX Family Protein; NUDIX Domain-Containing Protein; Beta-Lactamase-Like Protein; Beta-Lactamase; Zn-Dependent Hydrolase Glyoxylase; Hydroxyacylglutathione Hydrolase; Nudix Hydrolase; Metallo-Beta-Lactamase Domain Protein; NUDIX Protein; Hydrolase Protein; Zinc-Dependent Hydrolase; Hydrolase/Glyoxylase; Zn-Dependent Hydrolase; NUDIX/MutT Family Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Nudix Superfamily Hydrolase; Beta-Lactamase-Like Hydrolase
Number of amino acids: Translated: 550; Mature: 549
Protein sequence:
>550_residues MTRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDAADAQAHGQSTRRPGQSDLHL TQAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAPFAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVA RMPEGQSPVADETEQFEPVWVRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGK EARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSYLVGEPATGYIAIDPGPADAD HLDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRPAIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDI THTLKVLHTPGHAANHVCLVLLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGH AKAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIERVRELGLAGPL
Sequences:
>Translated_550_residues MTRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDAADAQAHGQSTRRPGQSDLHL TQAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAPFAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVA RMPEGQSPVADETEQFEPVWVRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGK EARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSYLVGEPATGYIAIDPGPADAD HLDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRPAIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDI THTLKVLHTPGHAANHVCLVLLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGH AKAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIERVRELGLAGPL >Mature_549_residues TRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDAADAQAHGQSTRRPGQSDLHLT QAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAPFAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVAR MPEGQSPVADETEQFEPVWVRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGKE ARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSYLVGEPATGYIAIDPGPADADH LDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRPAIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDIT HTLKVLHTPGHAANHVCLVLLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGHA KAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIERVRELGLAGPL
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI7705793, Length=253, Percent_Identity=35.1778656126482, Blast_Score=94, Evalue=3e-19, Organism=Caenorhabditis elegans, GI25143868, Length=219, Percent_Identity=29.6803652968037, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI20129357, Length=282, Percent_Identity=29.4326241134752, Blast_Score=91, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59350; Mature: 59219
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDA CCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC ADAQAHGQSTRRPGQSDLHLTQAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAP CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC FAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVARMPEGQSPVADETEQFEPVW HHHHHCCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCEE VRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGK ECHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC EARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSY HHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCE LVGEPATGYIAIDPGPADADHLDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRP EECCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC AIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDITHTLKVLHTPGHAANHVCLV EEEECCCCCCCHHCCCCCCHHHHCHHHEEEEECCCCCCCCEEEEEEEECCCCCCCCEEEE LLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGH EEECCEEECCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHH AKAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIER HHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH VRELGLAGPL HHHHCCCCCC >Mature Secondary Structure TRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDA CCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC ADAQAHGQSTRRPGQSDLHLTQAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAP CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC FAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVARMPEGQSPVADETEQFEPVW HHHHHCCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCEE VRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGK ECHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC EARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSY HHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCE LVGEPATGYIAIDPGPADADHLDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRP EECCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC AIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDITHTLKVLHTPGHAANHVCLV EEEECCCCCCCHHCCCCCCHHHHCHHHEEEEECCCCCCCCEEEEEEEECCCCCCCCEEEE LLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGH EEECCEEECCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHH AKAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIER HHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH VRELGLAGPL HHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA