Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is ycbL [C]

Identifier: 91786953

GI number: 91786953

Start: 1081498

End: 1083150

Strand: Reverse

Name: ycbL [C]

Synonym: Bpro_1055

Alternate gene names: 91786953

Gene position: 1083150-1081498 (Counterclockwise)

Preceding gene: 91786955

Following gene: 91786952

Centisome position: 20.83

GC content: 69.15

Gene sequence:

>1653_bases
ATGACAAGACCCTCCCAACTCCTTTACCCCCAGCGGGAACCCGCCCCCACCCGCCCGGCAGCCACGGTGCTGTTGCTGCG
CGACACAGCGCAGGGCCTGGAAGTGCTGATGACACGGCGTTCGATGACCGCCAGCTTTGCCCCCGGCGCCTATGTGTTCC
CAGGCGGCGGCATTGACGCGGCGGATGCCCAAGCGCATGGCCAGTCCACGCGGCGGCCCGGCCAGAGTGACCTGCATCTG
ACGCAGGCGATTGCCGCCATCCGGGAGAGCTTTGAAGAGCTGGGCGTGCTGCTGGCGCGCCATGCCGACGGCCGCTACGC
CAGCACGGCCGACATCGCGGCGCTGGACCGCCAGGCTCCGTTTGCCGCCCAGTGCGGCCAGCGCGGTCTCACGCTGGCCG
GTGACCAGGTGTTTGTGCTGGCCCACTGGGTGACCGACCGCGATTTGCCGCGCCGCTTCGATGTGCCCTTTCTGGTGGCG
CGCATGCCGGAGGGCCAGAGCCCGGTGGCAGACGAAACCGAGCAGTTCGAGCCGGTCTGGGTGCGCCCGGCCGAGGCGCT
GGCCCGGCACCATGCCGGCGGCTTCTTCATGATCTTCCCGACCCTGCGCACACTGGAGAGGCTGCAGCATTACCCCGATG
TCGATGCGGTGCTCCAGGCTTGCGCGCTGGAGGCGCCGCTGTGGACATCCTGCCCGCGCGCCGGCTTGCTGGCCGGCAAG
GAGGCGCGCTACATGGAACACGAGGCGCCCTACGGCGAGCTGGCGCTCACCTCGCCCGACGGGCAGATCGTGCACACGCT
GGACTGGCAAACGGCGCAGCCCGTGGCACTGCTGAGAAACCTGATGCGCCTGACCGCACCCAACCCCGGCGTGATGACCG
GGCCGGGCACCAACAGCTACCTCGTCGGCGAGCCTGCCACCGGCTACATCGCGATTGATCCGGGACCTGCCGATGCGGAT
CACCTGGACCGGCTGTACCGGGCGGCCGGCGGCGATATCCGCCTGATCGTCTGCACCCACTCGCACCCCGACCATTCGCC
GGGCGCCAAGCCATTGCAAGCGCTGTGCAACACCCGGCCCGCCATCGTCGGCTTGCCCTCGGAGCCCACGGCACGCGCCC
ACAGCGCGTTCACGCCGGACCGGGCGCTGGAGCATCAGGAGTTGCTCGCGCTGGTGGCGCCCGGGCCTGAGGGCGACATA
ACGCATACCCTGAAAGTGCTGCACACCCCCGGGCATGCCGCCAATCATGTGTGCCTGGTGCTGCTGGAAGACGGCATCCT
GTTCAGCGGCGACCACATCCTCAACGGCAGCACCACGGTGGTGGACCCGCCGGACGGCAACATGAGCGCCTACCTCGACT
CCCTGGATCTGCTGAGCAGCGCCTGCGACCAGCACCAGATCGAATTCATCGCCCCGGCCCACGGCTATGTGCTGGGGCAT
GCGAAAGCCGCCATTGCCCAGCTCAAGGCGCACCGCCTCAAGCGCGAGGCCAAGATCGTCGGCGTGATGCAGGCGCAGCC
CGACGGGACACTGGACGACTGGGTCGCCCAGGCCTACGACGACGTCGATGCACGCATCTGGCCGGTGGCCAAGCGCTCCC
TGCTGGCGCATATCGAGCGGGTGCGCGAACTGGGGCTGGCCGGCCCGCTTTGA

Upstream 100 bases:

>100_bases
ACCAATTCGAATTCCGATTCCAGTTGTCGGATGCCGCTGGCCGGACCCGAAGTAAGCCGGCGGGACAGCGCCTCCCCCTC
TTTCACTGCAAAATCGGGTC

Downstream 100 bases:

>100_bases
GGCCAGTCCCAAACTGCAACTGGCCCCCATACTGTTCAGTCACGTTATTCACACTGAATCGGAATGACCAGAACCTTGAC
TTGTCATTGCGAGCCTGACC

Product: beta-lactamase-like protein

Products: NA

Alternate protein names: Beta-Lactamase Domain-Containing Protein; Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Domain Protein; Hydrolase; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Beta-Lactamase Family Protein; NUDIX Family Hydrolase; NUDIX Family Protein; NUDIX Domain-Containing Protein; Beta-Lactamase-Like Protein; Beta-Lactamase; Zn-Dependent Hydrolase Glyoxylase; Hydroxyacylglutathione Hydrolase; Nudix Hydrolase; Metallo-Beta-Lactamase Domain Protein; NUDIX Protein; Hydrolase Protein; Zinc-Dependent Hydrolase; Hydrolase/Glyoxylase; Zn-Dependent Hydrolase; NUDIX/MutT Family Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Nudix Superfamily Hydrolase; Beta-Lactamase-Like Hydrolase

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MTRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDAADAQAHGQSTRRPGQSDLHL
TQAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAPFAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVA
RMPEGQSPVADETEQFEPVWVRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGK
EARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSYLVGEPATGYIAIDPGPADAD
HLDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRPAIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDI
THTLKVLHTPGHAANHVCLVLLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGH
AKAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIERVRELGLAGPL

Sequences:

>Translated_550_residues
MTRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDAADAQAHGQSTRRPGQSDLHL
TQAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAPFAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVA
RMPEGQSPVADETEQFEPVWVRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGK
EARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSYLVGEPATGYIAIDPGPADAD
HLDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRPAIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDI
THTLKVLHTPGHAANHVCLVLLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGH
AKAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIERVRELGLAGPL
>Mature_549_residues
TRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDAADAQAHGQSTRRPGQSDLHLT
QAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAPFAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVAR
MPEGQSPVADETEQFEPVWVRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGKE
ARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSYLVGEPATGYIAIDPGPADADH
LDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRPAIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDIT
HTLKVLHTPGHAANHVCLVLLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGHA
KAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIERVRELGLAGPL

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI7705793, Length=253, Percent_Identity=35.1778656126482, Blast_Score=94, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI25143868, Length=219, Percent_Identity=29.6803652968037, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI20129357, Length=282, Percent_Identity=29.4326241134752, Blast_Score=91, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59350; Mature: 59219

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDA
CCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
ADAQAHGQSTRRPGQSDLHLTQAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAP
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
FAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVARMPEGQSPVADETEQFEPVW
HHHHHCCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCEE
VRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGK
ECHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
EARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSY
HHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCE
LVGEPATGYIAIDPGPADADHLDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRP
EECCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC
AIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDITHTLKVLHTPGHAANHVCLV
EEEECCCCCCCHHCCCCCCHHHHCHHHEEEEECCCCCCCCEEEEEEEECCCCCCCCEEEE
LLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGH
EEECCEEECCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHH
AKAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIER
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
VRELGLAGPL
HHHHCCCCCC
>Mature Secondary Structure 
TRPSQLLYPQREPAPTRPAATVLLLRDTAQGLEVLMTRRSMTASFAPGAYVFPGGGIDA
CCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
ADAQAHGQSTRRPGQSDLHLTQAIAAIRESFEELGVLLARHADGRYASTADIAALDRQAP
CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
FAAQCGQRGLTLAGDQVFVLAHWVTDRDLPRRFDVPFLVARMPEGQSPVADETEQFEPVW
HHHHHCCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCEE
VRPAEALARHHAGGFFMIFPTLRTLERLQHYPDVDAVLQACALEAPLWTSCPRAGLLAGK
ECHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
EARYMEHEAPYGELALTSPDGQIVHTLDWQTAQPVALLRNLMRLTAPNPGVMTGPGTNSY
HHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCE
LVGEPATGYIAIDPGPADADHLDRLYRAAGGDIRLIVCTHSHPDHSPGAKPLQALCNTRP
EECCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCC
AIVGLPSEPTARAHSAFTPDRALEHQELLALVAPGPEGDITHTLKVLHTPGHAANHVCLV
EEEECCCCCCCHHCCCCCCHHHHCHHHEEEEECCCCCCCCEEEEEEEECCCCCCCCEEEE
LLEDGILFSGDHILNGSTTVVDPPDGNMSAYLDSLDLLSSACDQHQIEFIAPAHGYVLGH
EEECCEEECCCEEECCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEHH
AKAAIAQLKAHRLKREAKIVGVMQAQPDGTLDDWVAQAYDDVDARIWPVAKRSLLAHIER
HHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
VRELGLAGPL
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA