| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yebQ [H]
Identifier: 91786877
GI number: 91786877
Start: 994472
End: 995983
Strand: Reverse
Name: yebQ [H]
Synonym: Bpro_0977
Alternate gene names: 91786877
Gene position: 995983-994472 (Counterclockwise)
Preceding gene: 91786879
Following gene: 91786875
Centisome position: 19.15
GC content: 64.62
Gene sequence:
>1512_bases ATGTTGAAGTCAATCATTGCAAAACGAGATGGGGCGGTCGTTGGAAGTGCCGGAAGCGCGGAACGGACACCTTCGGTCCG GTGGGCACTCGCCGCCCTTTCGCTGTCCATGTTGCTGTCCTCGCTCGGCACCAGCATCGCCAATGTGGGCTTGCCGACCT TGGCACAGGCGTTCAACGCCTCCTTCCAGGAAGTCCAGTGGGTCGTCCTCGCGTATCTCCTCGCCATCACCACCCTGATC GTCAGCGTCGGACGGCTCGGTGACATCACCGGCCGGAAGCGGCTGCTGCTGGCCGGCATCCTCCTGTTCACGGTGGCATC AAGCCTGTGCGGCATCGCGCCCACGCTCTGGCTGCTGATTGCCGCCCGGGCGGCACAGGGCCTCGGAGCAGCCGTCATGA TGGCCCTCACCATGGCATTTGTCGGTGAGACGGTTGCCAAGGCAAAGACCGGTAGCGCCATGGGCCTGCTCGGAACGATG TCCGCGATGGGCACCGCTCTCGGTCCATCGCTTGGTGGCGTTCTGATCGCCGGACTCGGTTGGCCGGCCATCTTCTTCGT CAATGTACCGCTGGGTATCCTGACTTTTCTTCTCGCACATCGCTACCTGCCCGTTGATCGCCGGGGGCCGAAGACTGATA GCGCCGGTTTCGACCATGCGGGCACGCTGCTGCTGGCTCTGACGCTCGCGGCTTATGCACTCGCCATGACCATTCGTCAT CATGACGGGCGCGGCAGTTTCGGTCCGCTGAACATGGCGCTGCTGTTGGCTGCTGCCCTGGGCGTCGGCCTCTTCGTGCG CGCCCAGGCAAGAGCCGCATCCCCTTTGATCCGGTTGGCGATGTTCCGCGACCCAGGCTTAAGTGCAAGCCTCGCCATGA GCGCACTCGTCTCGACGGTGATGATGGCAACGCTGGTGGTCGGGCCGTTCTATCTCTCCCGTGCGCTCGGGCTCAACGCG GCACTTGTCGGACTCGTCTTGTCGGTCGGCCCGCTTGCCGCCGCGCTGGCCGGTGTGCCGGCCGGCCGCATGGCGGACCG TTTTGGCGCACAACGCATGACCATCGTTGGGCTCATCGCCATAGCGGCCGGCTCCTTCGTGCTATCCATGGTGCCGGCGA CGCCCGGCATCCCCGGCTACATCGCGCCCATCGTCGTCATCACCGTCGGCTATGCGCTGTTCATGACGGCCAACAACACC GCCGTCATGACCGATATCCGTCCGGACCAGCGGGGCGTCATTTCCGGCATGCTCAGCCTGTCGCGCAATCTCGGGCTCAT CACCGGCGCATCCGTGATGGGCGCGGTGTTCGCGCTCGCATCGGCAACGACCGACATCACAACGGCGCGTCCCGAGGCCG TTGCCACCGGCATGCGATTCACGTTCGCAGTCGCGGCGATTCTGATCGTCGTCGCGCTCGCCATCGCGGTGGGAACTTAC CGCCGCACATGGCGCAATCGGGCACCTGCTCCAGGAGCAGCGTTGCAGGCGAGCAAGAAAAATTCGGGATGA
Upstream 100 bases:
>100_bases AAAGTGCAAATGGTGCGCCTTCCGCTATGCCAGGCAAAGAACTACGCTTCAGGCAGCTCCATTTCGGAGTCGCCAGCAAA CGGAGCAGAAAGCGGAGTTC
Downstream 100 bases:
>100_bases CCTCGCGGCACTTTAATTCGCGCAGGCTCGACCTTCCAGATGAAGGGTGAGTAACGCATTAGCGTTAACGATTCCGATGC AGTTTCCCCTGCCGTAAGAA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MLKSIIAKRDGAVVGSAGSAERTPSVRWALAALSLSMLLSSLGTSIANVGLPTLAQAFNASFQEVQWVVLAYLLAITTLI VSVGRLGDITGRKRLLLAGILLFTVASSLCGIAPTLWLLIAARAAQGLGAAVMMALTMAFVGETVAKAKTGSAMGLLGTM SAMGTALGPSLGGVLIAGLGWPAIFFVNVPLGILTFLLAHRYLPVDRRGPKTDSAGFDHAGTLLLALTLAAYALAMTIRH HDGRGSFGPLNMALLLAAALGVGLFVRAQARAASPLIRLAMFRDPGLSASLAMSALVSTVMMATLVVGPFYLSRALGLNA ALVGLVLSVGPLAAALAGVPAGRMADRFGAQRMTIVGLIAIAAGSFVLSMVPATPGIPGYIAPIVVITVGYALFMTANNT AVMTDIRPDQRGVISGMLSLSRNLGLITGASVMGAVFALASATTDITTARPEAVATGMRFTFAVAAILIVVALAIAVGTY RRTWRNRAPAPGAALQASKKNSG
Sequences:
>Translated_503_residues MLKSIIAKRDGAVVGSAGSAERTPSVRWALAALSLSMLLSSLGTSIANVGLPTLAQAFNASFQEVQWVVLAYLLAITTLI VSVGRLGDITGRKRLLLAGILLFTVASSLCGIAPTLWLLIAARAAQGLGAAVMMALTMAFVGETVAKAKTGSAMGLLGTM SAMGTALGPSLGGVLIAGLGWPAIFFVNVPLGILTFLLAHRYLPVDRRGPKTDSAGFDHAGTLLLALTLAAYALAMTIRH HDGRGSFGPLNMALLLAAALGVGLFVRAQARAASPLIRLAMFRDPGLSASLAMSALVSTVMMATLVVGPFYLSRALGLNA ALVGLVLSVGPLAAALAGVPAGRMADRFGAQRMTIVGLIAIAAGSFVLSMVPATPGIPGYIAPIVVITVGYALFMTANNT AVMTDIRPDQRGVISGMLSLSRNLGLITGASVMGAVFALASATTDITTARPEAVATGMRFTFAVAAILIVVALAIAVGTY RRTWRNRAPAPGAALQASKKNSG >Mature_503_residues MLKSIIAKRDGAVVGSAGSAERTPSVRWALAALSLSMLLSSLGTSIANVGLPTLAQAFNASFQEVQWVVLAYLLAITTLI VSVGRLGDITGRKRLLLAGILLFTVASSLCGIAPTLWLLIAARAAQGLGAAVMMALTMAFVGETVAKAKTGSAMGLLGTM SAMGTALGPSLGGVLIAGLGWPAIFFVNVPLGILTFLLAHRYLPVDRRGPKTDSAGFDHAGTLLLALTLAAYALAMTIRH HDGRGSFGPLNMALLLAAALGVGLFVRAQARAASPLIRLAMFRDPGLSASLAMSALVSTVMMATLVVGPFYLSRALGLNA ALVGLVLSVGPLAAALAGVPAGRMADRFGAQRMTIVGLIAIAAGSFVLSMVPATPGIPGYIAPIVVITVGYALFMTANNT AVMTDIRPDQRGVISGMLSLSRNLGLITGASVMGAVFALASATTDITTARPEAVATGMRFTFAVAAILIVVALAIAVGTY RRTWRNRAPAPGAALQASKKNSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=393, Percent_Identity=32.0610687022901, Blast_Score=176, Evalue=4e-45, Organism=Escherichia coli, GI1790195, Length=471, Percent_Identity=23.5668789808917, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788392, Length=446, Percent_Identity=28.2511210762332, Blast_Score=99, Evalue=7e-22, Organism=Escherichia coli, GI1789042, Length=410, Percent_Identity=23.9024390243902, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788710, Length=299, Percent_Identity=25.4180602006689, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1790146, Length=181, Percent_Identity=28.1767955801105, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323735, Length=438, Percent_Identity=23.2876712328767, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6319770, Length=393, Percent_Identity=21.882951653944, Blast_Score=75, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324264, Length=184, Percent_Identity=31.5217391304348, Blast_Score=75, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6321663, Length=142, Percent_Identity=27.4647887323944, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324954, Length=296, Percent_Identity=26.6891891891892, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 51361; Mature: 51361
Theoretical pI: Translated: 11.89; Mature: 11.89
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKSIIAKRDGAVVGSAGSAERTPSVRWALAALSLSMLLSSLGTSIANVGLPTLAQAFNA CCHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC SFQEVQWVVLAYLLAITTLIVSVGRLGDITGRKRLLLAGILLFTVASSLCGIAPTLWLLI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AARAAQGLGAAVMMALTMAFVGETVAKAKTGSAMGLLGTMSAMGTALGPSLGGVLIAGLG HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCC WPAIFFVNVPLGILTFLLAHRYLPVDRRGPKTDSAGFDHAGTLLLALTLAAYALAMTIRH CCCHHEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC HDGRGSFGPLNMALLLAAALGVGLFVRAQARAASPLIRLAMFRDPGLSASLAMSALVSTV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH MMATLVVGPFYLSRALGLNAALVGLVLSVGPLAAALAGVPAGRMADRFGAQRMTIVGLIA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHH IAAGSFVLSMVPATPGIPGYIAPIVVITVGYALFMTANNTAVMTDIRPDQRGVISGMLSL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHH SRNLGLITGASVMGAVFALASATTDITTARPEAVATGMRFTFAVAAILIVVALAIAVGTY HHCCCCEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRTWRNRAPAPGAALQASKKNSG HHHHHCCCCCCCHHHCCCCCCCC >Mature Secondary Structure MLKSIIAKRDGAVVGSAGSAERTPSVRWALAALSLSMLLSSLGTSIANVGLPTLAQAFNA CCHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC SFQEVQWVVLAYLLAITTLIVSVGRLGDITGRKRLLLAGILLFTVASSLCGIAPTLWLLI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AARAAQGLGAAVMMALTMAFVGETVAKAKTGSAMGLLGTMSAMGTALGPSLGGVLIAGLG HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCC WPAIFFVNVPLGILTFLLAHRYLPVDRRGPKTDSAGFDHAGTLLLALTLAAYALAMTIRH CCCHHEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC HDGRGSFGPLNMALLLAAALGVGLFVRAQARAASPLIRLAMFRDPGLSASLAMSALVSTV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH MMATLVVGPFYLSRALGLNAALVGLVLSVGPLAAALAGVPAGRMADRFGAQRMTIVGLIA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHH IAAGSFVLSMVPATPGIPGYIAPIVVITVGYALFMTANNTAVMTDIRPDQRGVISGMLSL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEECCCCEEEECCCCCHHHHHHHHHHH SRNLGLITGASVMGAVFALASATTDITTARPEAVATGMRFTFAVAAILIVVALAIAVGTY HHCCCCEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRTWRNRAPAPGAALQASKKNSG HHHHHCCCCCCCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]