Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yfhM [H]

Identifier: 91786672

GI number: 91786672

Start: 790773

End: 791750

Strand: Reverse

Name: yfhM [H]

Synonym: Bpro_0770

Alternate gene names: 91786672

Gene position: 791750-790773 (Counterclockwise)

Preceding gene: 91786673

Following gene: 91786669

Centisome position: 15.23

GC content: 66.05

Gene sequence:

>978_bases
ATGATTGAAACAAATCTGCGGGAGCTGCCGCATGGCATCACCCTGTCATGCCGCAGTGCCGGCGAGAAGGGCCGGCCGGT
GCTGATGTTCCTGCATGGCTTCCCGGAAGCCGCTTTTGTGTGGGATAGCCTGCTGACCCACTTTGCCCAACCCGGGAACG
GCGGCTTTCGCTGTGTGGCGCCCAACTTGCGCGGCTTTGAGCACTCCAGCGCCCCCGCCGACGTGGCCGCCTACCGCCCG
AAACACCTGGTGCAGGACATTGCGGCACTCATTGCACTGGAGTGCGGGGAAAGCGGTCTGCAGCACAGCCCAGGCGGTGA
CAAGCCCGGGGGCCAGCTTGCCTGCCTGGTCGCCCACGACTGGGGCGGCGCCGTCGCCTGGAACCTGGCGGCGAGCCGGC
CGCATTTGACGAGAAAGCTGGCCATCATCAATTCGCCGCATCCCGGCACCTTTTTACGTGAGCTGCAGCACTCTGCCGCC
CAGCAGGCCGCCAGCGCCTACATGAATTTCCTGATCCGGCCGGATGCCGAGGCGCTGCTGGCTGAAGACGACTTCCGCCG
GCTGTGGGAGTTCTTCAGCAACATGGGTGCGGTGGACGGGCCTCACGCCTGGCTGACGGAGACAGTGCGCGCCCAGTACC
GCGAGGTATGGCGCCTGGGCCTGACCGGCCCCTGCAATTACTACCGGGCCTCACCCCTGCGCCCGCCCCGGTCCGGCCCG
CCGCACCATGACCCCGCCGCTGCGGGCGTGACCCTTCCGCGCGAGATGCTCGAAGTCCACCTTCCCACCCTGGTGCTCTG
GGGCACGGAAGACACCGCATTGCCGACCGCACTGCTGGACGGCTTGGGTGACTATGTACCGCAAATGGATCTGCGCCGCA
TGGGAGGCGCCACGCACTGGATCGTGCATGAGCAGCCGGAACGGGTAGCCGCTCATCTGCAGCAATTCCTGCAGGTTTCT
GCGCCGAATTGCTATTGA

Upstream 100 bases:

>100_bases
CCCGCCGCCCTGACGGCCGGCCCGCAACGCTAAAGCTTCGAGCAAAAATGCTTGCGCCCGAGATATGACGGGAGCAAGCA
GCTATTGAAAGCATAGCGCG

Downstream 100 bases:

>100_bases
TTAGAGCTTAAAGCTCCGGTATTTCCTGGATCAGAGGCAAATTTCACCTAAAACCGCCAAGCCGCGGCCTAGTTTAATAC
AGCGAAGGCGCGCCCTCGGG

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVAPNLRGFEHSSAPADVAAYRP
KHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHDWGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAA
QQAASAYMNFLIRPDAEALLAEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP
PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHWIVHEQPERVAAHLQQFLQVS
APNCY

Sequences:

>Translated_325_residues
MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVAPNLRGFEHSSAPADVAAYRP
KHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHDWGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAA
QQAASAYMNFLIRPDAEALLAEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP
PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHWIVHEQPERVAAHLQQFLQVS
APNCY
>Mature_325_residues
MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVAPNLRGFEHSSAPADVAAYRP
KHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHDWGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAA
QQAASAYMNFLIRPDAEALLAEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP
PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHWIVHEQPERVAAHLQQFLQVS
APNCY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI218777837, Length=312, Percent_Identity=28.8461538461538, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI218777840, Length=310, Percent_Identity=30.9677419354839, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI13376164, Length=310, Percent_Identity=30.9677419354839, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI27597073, Length=326, Percent_Identity=22.0858895705521, Blast_Score=79, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17554012, Length=309, Percent_Identity=29.7734627831715, Blast_Score=131, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17562298, Length=295, Percent_Identity=27.1186440677966, Blast_Score=114, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 35650; Mature: 35650

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVA
CCCCCHHHCCCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEC
PNLRGFEHSSAPADVAAYRPKHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHD
CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
WGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAAQQAASAYMNFLIRPDAEALL
CCCEEEEEECCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHW
CCCCCCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEE
IVHEQPERVAAHLQQFLQVSAPNCY
EEECCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIETNLRELPHGITLSCRSAGEKGRPVLMFLHGFPEAAFVWDSLLTHFAQPGNGGFRCVA
CCCCCHHHCCCCCEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEC
PNLRGFEHSSAPADVAAYRPKHLVQDIAALIALECGESGLQHSPGGDKPGGQLACLVAHD
CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
WGGAVAWNLAASRPHLTRKLAIINSPHPGTFLRELQHSAAQQAASAYMNFLIRPDAEALL
CCCEEEEEECCCCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AEDDFRRLWEFFSNMGAVDGPHAWLTETVRAQYREVWRLGLTGPCNYYRASPLRPPRSGP
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PHHDPAAAGVTLPREMLEVHLPTLVLWGTEDTALPTALLDGLGDYVPQMDLRRMGGATHW
CCCCCCCCCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEE
IVHEQPERVAAHLQQFLQVSAPNCY
EEECCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]