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The map label for this gene is yvbU [H]

Identifier: 91786577

GI number: 91786577

Start: 685083

End: 685952

Strand: Direct

Name: yvbU [H]

Synonym: Bpro_0673

Alternate gene names: 91786577

Gene position: 685083-685952 (Clockwise)

Preceding gene: 91786575

Following gene: 91786579

Centisome position: 13.17

GC content: 65.29

Gene sequence:

>870_bases
ATGACCCTGGCCCAACTCGAAGTGCTGATCACCCTGGACGAATGCCGCAGCTTCTCGCGTGCGGCCATGCGTCTGGGCAC
GACACAGTCAGCCGTCAGCCACGCCCTGCGCGCACTGGAAACGCAGTTCGGCGTGAAGCTGGCGCAGCGCGATGCCTCCG
GCGTGGCCATGACAGACGCCGGTGAACGCCTGCTGCTGCGAGCCCGCGAAATGACGGCCCTGGCGGCCACCATGACACAG
GAGCTGGGCGATGCCCGGGAGCTGAAAACCGGCACGCTGCGCATCGGCTCGTTTGGCCCGACTTCCACCGTGAACCTGTT
GCCGCCCCTGCTCGCGGCGTTCAAAAAGCGCCACCCGGGCGCGCAGGTGCGCATCGAGGAAGAAAGCGACGAGGTGGTGG
ACGACTGGCTGCTGCAAAAGCGCGTGGAACTGGGCTTTGTCGTGGTGCCCGACGAACGTTTTGAAGTGCAGCCGCTGGTG
CAGGATGAATTCGTCGCCATCCTGCCGACCGGGCATCCGCTGGCCAAACACAAGGCGGTGCCGATCAGCGCGCTCACGGG
GCTGGACTTTGTGCTGACCGAAGCCGGTTGCGGCCCGGTCATCGTGCCCATCCTCCAGAAAAACATTGCACTGCCCAAGG
TGCTGTATCACTTCACGCAGGTCATCTCCATCCTGCAGTTTGTGCAGCGCGGCCTGGCGGTATCGGTGGCGGCCCGCCTG
GCGCTGCCCGACGCACCCAAAGGCGTGGTTTACCGGCCCCTGCTGCCCGCGCAGCCGCGTACGGTCGGACTCGCTTGTCT
GGATGCGGCTAGGCTGTCGCCGCTGGCACGTGCATTTTGGGACCTGGCCAAAGCGCAGACTAAAGCTTGA

Upstream 100 bases:

>100_bases
TGGTTCTTGTTGTTGGAAAGCGGTGAATGGGGTAAATTGATACATGAGATTAATTGTTAAATTGCTCACTATCAAATGAG
TATTCATTCATCATGAAATC

Downstream 100 bases:

>100_bases
GGCCGTGCCCGTTTGCTATCGTTTGCTCTCTATTGGATGGTTTTTTTGACAGCTGTTTTTGTCTGCTGTTGTCAGGCTGG
CAGCAATACTGTTCAGTTAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTLAQLEVLITLDECRSFSRAAMRLGTTQSAVSHALRALETQFGVKLAQRDASGVAMTDAGERLLLRAREMTALAATMTQ
ELGDARELKTGTLRIGSFGPTSTVNLLPPLLAAFKKRHPGAQVRIEEESDEVVDDWLLQKRVELGFVVVPDERFEVQPLV
QDEFVAILPTGHPLAKHKAVPISALTGLDFVLTEAGCGPVIVPILQKNIALPKVLYHFTQVISILQFVQRGLAVSVAARL
ALPDAPKGVVYRPLLPAQPRTVGLACLDAARLSPLARAFWDLAKAQTKA

Sequences:

>Translated_289_residues
MTLAQLEVLITLDECRSFSRAAMRLGTTQSAVSHALRALETQFGVKLAQRDASGVAMTDAGERLLLRAREMTALAATMTQ
ELGDARELKTGTLRIGSFGPTSTVNLLPPLLAAFKKRHPGAQVRIEEESDEVVDDWLLQKRVELGFVVVPDERFEVQPLV
QDEFVAILPTGHPLAKHKAVPISALTGLDFVLTEAGCGPVIVPILQKNIALPKVLYHFTQVISILQFVQRGLAVSVAARL
ALPDAPKGVVYRPLLPAQPRTVGLACLDAARLSPLARAFWDLAKAQTKA
>Mature_288_residues
TLAQLEVLITLDECRSFSRAAMRLGTTQSAVSHALRALETQFGVKLAQRDASGVAMTDAGERLLLRAREMTALAATMTQE
LGDARELKTGTLRIGSFGPTSTVNLLPPLLAAFKKRHPGAQVRIEEESDEVVDDWLLQKRVELGFVVVPDERFEVQPLVQ
DEFVAILPTGHPLAKHKAVPISALTGLDFVLTEAGCGPVIVPILQKNIALPKVLYHFTQVISILQFVQRGLAVSVAARLA
LPDAPKGVVYRPLLPAQPRTVGLACLDAARLSPLARAFWDLAKAQTKA

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=28.5714285714286, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=28.9198606271777, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=29.957805907173, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788887, Length=293, Percent_Identity=27.3037542662116, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787879, Length=243, Percent_Identity=23.8683127572016, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790399, Length=292, Percent_Identity=27.0547945205479, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786401, Length=162, Percent_Identity=30.2469135802469, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788481, Length=250, Percent_Identity=27.6, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789173, Length=122, Percent_Identity=35.2459016393443, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789204, Length=272, Percent_Identity=26.8382352941176, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787128, Length=134, Percent_Identity=29.1044776119403, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI2367136, Length=271, Percent_Identity=23.9852398523985, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=175, Percent_Identity=29.7142857142857, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=153, Percent_Identity=32.0261437908497, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31307; Mature: 31176

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAQLEVLITLDECRSFSRAAMRLGTTQSAVSHALRALETQFGVKLAQRDASGVAMTDA
CCHHHEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
GERLLLRAREMTALAATMTQELGDARELKTGTLRIGSFGPTSTVNLLPPLLAAFKKRHPG
CHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
AQVRIEEESDEVVDDWLLQKRVELGFVVVPDERFEVQPLVQDEFVAILPTGHPLAKHKAV
CEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEEEECCCCHHHCCCC
PISALTGLDFVLTEAGCGPVIVPILQKNIALPKVLYHFTQVISILQFVQRGLAVSVAARL
CHHHHHCCHHEEECCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPDAPKGVVYRPLLPAQPRTVGLACLDAARLSPLARAFWDLAKAQTKA
CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLAQLEVLITLDECRSFSRAAMRLGTTQSAVSHALRALETQFGVKLAQRDASGVAMTDA
CHHHEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
GERLLLRAREMTALAATMTQELGDARELKTGTLRIGSFGPTSTVNLLPPLLAAFKKRHPG
CHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCC
AQVRIEEESDEVVDDWLLQKRVELGFVVVPDERFEVQPLVQDEFVAILPTGHPLAKHKAV
CEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEEEECCCCHHHCCCC
PISALTGLDFVLTEAGCGPVIVPILQKNIALPKVLYHFTQVISILQFVQRGLAVSVAARL
CHHHHHCCHHEEECCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALPDAPKGVVYRPLLPAQPRTVGLACLDAARLSPLARAFWDLAKAQTKA
CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]