| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is dan [H]
Identifier: 91786568
GI number: 91786568
Start: 674781
End: 676262
Strand: Direct
Name: dan [H]
Synonym: Bpro_0663
Alternate gene names: 91786568
Gene position: 674781-676262 (Clockwise)
Preceding gene: 91786567
Following gene: 91786571
Centisome position: 12.98
GC content: 65.79
Gene sequence:
>1482_bases ATGACACGTGCGACCCTGCTTGAAAGCGGGCTGGTGATTGACGGTACCGGTGCTGAAGGCTGGATTGGCGACGTTCTGCT GATGGACGGCCGTATTGCGGCGCTGGGCAAAAATCTCAGTGACCAGCTGCCCGAAGGCCTGAAGCCCGAAGAGGTGGCCC GTATCGATTGCACGGGCCTGGCCATCGCCCCGGGCTTTATCGATGTGCACACGCACGACGATGCGATCGTGCTCAAGCAG CCCGACATGCTGCCCAAGGTGTCGCAGGGCATCACCACCGTCATCACCGGCAACTGCGGCATTTCGCTGCTGCCTTTCAT CGTCGACAACCCCGAACCCCCGCTGAATCTGCTCGGGGCCGATTCGTTTCGCTTTGACTCCGTTCAAAGCTATGAGCGCG CCATCATCCAGGCGCAGCCGGCAGTGAATGTCGCCGTGCTGATTGGCCACACCACCCTGCGCTTTGCCTGCATGGGCGAC CTGACCCGCGCCGCCAGCGCCAGCGAGCTCGACGCCATGTGCGCGCTGCTCACGCAGTGCATGGAGAGCGGCGCCACCGG CATGTCGTCAGGCCTTTTTTACGAACCGGCCTTTGCCGCGCCGGCGCAGGAAGTGGTGCGCCTGGCCCAGGTGGTGTCGC GTTTCGGCGGGGTGTACAGCACCCACCTGCGCGATGAAATGGCGACCATCGTGGAAGCGCTGCACGAGGCGGGCGATACC GCTTTCAGCGCCGGCGTGCCGCTGATCGTGTCGCACCACAAATGCGCCGGGCCCGCCAACTGGGGTCGCACGCAGCAGAC CCTGCCGCTGATTGAATCGCTCGCCCGCCGCCAGCCGGTGGCCATGGACGTCTACCCCTATGTGGCCGGCTCCACCGTGC TGCGTGAAGACCTGGTCGATGGCGTGATCGACGTGCTGGTGAGCTGGTCCACGCCGCACCCCGAAATGACGGGCCGCACG CTGGCCTCGATTGCGGCCGAGTGGGGCGTTGACCAGAAGGCGGTGTGCCGCCGCCTGCAGCCCGGAGGCGCCTGTTATTT CCAGATGCACGAAGACGACGTGCGGCGCGTCGTGGCCCACCCGCTGACCATGATCGGCTCGGACGGCTTGCCGCATGACC AGCATCCGCATCCGCGCCTGTGGGGCGCGTTTCCGCGCGTGCTGGCGCGCTACTGGCGCGAGGAGAAACTGTTTTCGCTG GAAACCGCCATCTACAAAATGACCGGCCTGTCGGCCCGCAATTTCCGCCTGCACCAGCGCGGCCAGCTGCAGCCCGGCTG GCATGCCGATGTAGTGGTGCTGGATCCGGCCCGCGTGCGCGACGTGGCCACCTACGAGAACCCGATCGCGCTGTCTGAAG GCATCGAGAAGGTGTTTGTCAACGGCGAACTGGCCTATGTGGCCGGCTCCGCCGATGCGGCCAACGCCAAGGTGCAGGCG CGCGCTGGCCGGTTGCTAAAACGGCACGTAACCCAGCCCTGA
Upstream 100 bases:
>100_bases GCGGCGTGCGCGACGTGCTCAGCACGCGCGGCGTGGACATGCGGCACTATCCCAGGCTCGATTGGGACACGGTCACCGCC GTCAAGGAAAGCAAACTCAA
Downstream 100 bases:
>100_bases AAAGGTTCCCCGCCCAGCAGGGGCCGCGGGACTGGCTTTGCCAGACCGCAGGCGCAGCGCCCCCTCGGGGGGCAGCGAAC CACACGAAGTGGGGAGCGTG
Product: dihydroorotase
Products: NA
Alternate protein names: N-acyl-D-amino-acid deacylase [H]
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MTRATLLESGLVIDGTGAEGWIGDVLLMDGRIAALGKNLSDQLPEGLKPEEVARIDCTGLAIAPGFIDVHTHDDAIVLKQ PDMLPKVSQGITTVITGNCGISLLPFIVDNPEPPLNLLGADSFRFDSVQSYERAIIQAQPAVNVAVLIGHTTLRFACMGD LTRAASASELDAMCALLTQCMESGATGMSSGLFYEPAFAAPAQEVVRLAQVVSRFGGVYSTHLRDEMATIVEALHEAGDT AFSAGVPLIVSHHKCAGPANWGRTQQTLPLIESLARRQPVAMDVYPYVAGSTVLREDLVDGVIDVLVSWSTPHPEMTGRT LASIAAEWGVDQKAVCRRLQPGGACYFQMHEDDVRRVVAHPLTMIGSDGLPHDQHPHPRLWGAFPRVLARYWREEKLFSL ETAIYKMTGLSARNFRLHQRGQLQPGWHADVVVLDPARVRDVATYENPIALSEGIEKVFVNGELAYVAGSADAANAKVQA RAGRLLKRHVTQP
Sequences:
>Translated_493_residues MTRATLLESGLVIDGTGAEGWIGDVLLMDGRIAALGKNLSDQLPEGLKPEEVARIDCTGLAIAPGFIDVHTHDDAIVLKQ PDMLPKVSQGITTVITGNCGISLLPFIVDNPEPPLNLLGADSFRFDSVQSYERAIIQAQPAVNVAVLIGHTTLRFACMGD LTRAASASELDAMCALLTQCMESGATGMSSGLFYEPAFAAPAQEVVRLAQVVSRFGGVYSTHLRDEMATIVEALHEAGDT AFSAGVPLIVSHHKCAGPANWGRTQQTLPLIESLARRQPVAMDVYPYVAGSTVLREDLVDGVIDVLVSWSTPHPEMTGRT LASIAAEWGVDQKAVCRRLQPGGACYFQMHEDDVRRVVAHPLTMIGSDGLPHDQHPHPRLWGAFPRVLARYWREEKLFSL ETAIYKMTGLSARNFRLHQRGQLQPGWHADVVVLDPARVRDVATYENPIALSEGIEKVFVNGELAYVAGSADAANAKVQA RAGRLLKRHVTQP >Mature_492_residues TRATLLESGLVIDGTGAEGWIGDVLLMDGRIAALGKNLSDQLPEGLKPEEVARIDCTGLAIAPGFIDVHTHDDAIVLKQP DMLPKVSQGITTVITGNCGISLLPFIVDNPEPPLNLLGADSFRFDSVQSYERAIIQAQPAVNVAVLIGHTTLRFACMGDL TRAASASELDAMCALLTQCMESGATGMSSGLFYEPAFAAPAQEVVRLAQVVSRFGGVYSTHLRDEMATIVEALHEAGDTA FSAGVPLIVSHHKCAGPANWGRTQQTLPLIESLARRQPVAMDVYPYVAGSTVLREDLVDGVIDVLVSWSTPHPEMTGRTL ASIAAEWGVDQKAVCRRLQPGGACYFQMHEDDVRRVVAHPLTMIGSDGLPHDQHPHPRLWGAFPRVLARYWREEKLFSLE TAIYKMTGLSARNFRLHQRGQLQPGWHADVVVLDPARVRDVATYENPIALSEGIEKVFVNGELAYVAGSADAANAKVQAR AGRLLKRHVTQP
Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]
COG id: COG3653
COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR023100 - InterPro: IPR012855 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]
EC number: =3.5.1.81 [H]
Molecular weight: Translated: 53341; Mature: 53209
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRATLLESGLVIDGTGAEGWIGDVLLMDGRIAALGKNLSDQLPEGLKPEEVARIDCTGL CCCHHHHHCCCEEECCCCCCCCCCEEEECCCHHHHCCCHHHHCCCCCCHHHHEEEEECCE AIAPGFIDVHTHDDAIVLKQPDMLPKVSQGITTVITGNCGISLLPFIVDNPEPPLNLLGA EECCCEEEEEECCCEEEEECCCCCCHHHCCCEEEEECCCCCEEEEEEECCCCCCCEECCC DSFRFDSVQSYERAIIQAQPAVNVAVLIGHTTLRFACMGDLTRAASASELDAMCALLTQC CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH MESGATGMSSGLFYEPAFAAPAQEVVRLAQVVSRFGGVYSTHLRDEMATIVEALHEAGDT HHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC AFSAGVPLIVSHHKCAGPANWGRTQQTLPLIESLARRQPVAMDVYPYVAGSTVLREDLVD HHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHCCHHHHHHHHHH GVIDVLVSWSTPHPEMTGRTLASIAAEWGVDQKAVCRRLQPGGACYFQMHEDDVRRVVAH HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECHHHHHHHHHH PLTMIGSDGLPHDQHPHPRLWGAFPRVLARYWREEKLFSLETAIYKMTGLSARNFRLHQR HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCC GQLQPGWHADVVVLDPARVRDVATYENPIALSEGIEKVFVNGELAYVAGSADAANAKVQA CCCCCCCCCCEEEECCHHHHHHHHCCCCCHHHHCCCEEEECCEEEEEECCCCCCCCCHHH RAGRLLKRHVTQP HHHHHHHHHCCCC >Mature Secondary Structure TRATLLESGLVIDGTGAEGWIGDVLLMDGRIAALGKNLSDQLPEGLKPEEVARIDCTGL CCHHHHHCCCEEECCCCCCCCCCEEEECCCHHHHCCCHHHHCCCCCCHHHHEEEEECCE AIAPGFIDVHTHDDAIVLKQPDMLPKVSQGITTVITGNCGISLLPFIVDNPEPPLNLLGA EECCCEEEEEECCCEEEEECCCCCCHHHCCCEEEEECCCCCEEEEEEECCCCCCCEECCC DSFRFDSVQSYERAIIQAQPAVNVAVLIGHTTLRFACMGDLTRAASASELDAMCALLTQC CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH MESGATGMSSGLFYEPAFAAPAQEVVRLAQVVSRFGGVYSTHLRDEMATIVEALHEAGDT HHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC AFSAGVPLIVSHHKCAGPANWGRTQQTLPLIESLARRQPVAMDVYPYVAGSTVLREDLVD HHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCHHCCHHHHHHHHHH GVIDVLVSWSTPHPEMTGRTLASIAAEWGVDQKAVCRRLQPGGACYFQMHEDDVRRVVAH HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECHHHHHHHHHH PLTMIGSDGLPHDQHPHPRLWGAFPRVLARYWREEKLFSLETAIYKMTGLSARNFRLHQR HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCC GQLQPGWHADVVVLDPARVRDVATYENPIALSEGIEKVFVNGELAYVAGSADAANAKVQA CCCCCCCCCCEEEECCHHHHHHHHCCCCCHHHHCCCEEEECCEEEEEECCCCCCCCCHHH RAGRLLKRHVTQP HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8541651 [H]