| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is livF [H]
Identifier: 91786505
GI number: 91786505
Start: 604824
End: 605633
Strand: Reverse
Name: livF [H]
Synonym: Bpro_0599
Alternate gene names: 91786505
Gene position: 605633-604824 (Counterclockwise)
Preceding gene: 91786506
Following gene: 91786504
Centisome position: 11.65
GC content: 60.86
Gene sequence:
>810_bases ATGGACTCCAACAACATCGTTCTCAACGTCAACGGCATCGAGGTCATCTACAACCACGTGATCCTGGTGCTCAAGGGCGT GTCGCTCCAGGTGCCCCAGGGTCGCATCGTCGCCCTTCTGGGTGGCAATGGCGCAGGCAAGACCACGACCCTGCGCGCCA TTTCCAACCTCCTCAAAGGGGAACGGGGAGAAGTCACCAAGGGCTCGATCGAGCTGCGTGGCGAGCGCATTGAGAACCTC TCGACGTCCGACCTGGTGCAGCGCGGCGTGGTGCAGGTCATGGAGGGCCGGCACTGCTTTGCCCACCTGACCATTGAAGA GAACCTGCTGACCGGTGCCTACACCCGCAAGAGCAAGGCCGAAGTGGCCGCCAACCTGGAGAAGGTCTACAACTACTTTC CGCGCCTGAAAACGCGGCGTACCTCGCAGGCCGCGTACACCTCCGGTGGCGAGCAGCAGATGTGCGCGATTGGCCGGGCC CTGATGGCCAGCCCATCCATGGTGTTGCTGGACGAGCCCTCGATGGGGCTGGCGCCGCAAATTGTCGAAGAGGTGTTCAA CATCGTCAAAGACCTCAACCAGAAAGAAAAGGTCACCTTCCTGCTGGCTGAGCAAAATACCAACATGGCGCTGAAATACG CCGACTATGGCTACATCATGGAAAGCGGCCGCGTGGTGATGGACGGGCTGGCGGCCGACCTGGCCAGCAATGAAGACGTC AAGGAGTTTTACCTGGGTGTGGGCGGCGGGGAACGCAAGAGCTTCAAGGACGTCAAGAGCTACAAGCGCCGCAAGCGCTG GCTGGCCTGA
Upstream 100 bases:
>100_bases GATTGCGGATCGGGTCCGCAATGACAGCCGGGATGGCCCGCAATGACAGGCCAATCGGCAGCATTGCGCGCAGCGCTGCC GATTGGTAAAGGCAAAACTT
Downstream 100 bases:
>100_bases TATGGCCCCCACGCTCCCCACTTCGTGTGGTTCGCTGCCCCCCGAGGGGGCCGCCCGCCTGCGGCCCGGCAAAGCCGGTT CCGCGGCTTGGACTGGCCCA
Product: ABC transporter-like protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 269; Mature: 269
Protein sequence:
>269_residues MDSNNIVLNVNGIEVIYNHVILVLKGVSLQVPQGRIVALLGGNGAGKTTTLRAISNLLKGERGEVTKGSIELRGERIENL STSDLVQRGVVQVMEGRHCFAHLTIEENLLTGAYTRKSKAEVAANLEKVYNYFPRLKTRRTSQAAYTSGGEQQMCAIGRA LMASPSMVLLDEPSMGLAPQIVEEVFNIVKDLNQKEKVTFLLAEQNTNMALKYADYGYIMESGRVVMDGLAADLASNEDV KEFYLGVGGGERKSFKDVKSYKRRKRWLA
Sequences:
>Translated_269_residues MDSNNIVLNVNGIEVIYNHVILVLKGVSLQVPQGRIVALLGGNGAGKTTTLRAISNLLKGERGEVTKGSIELRGERIENL STSDLVQRGVVQVMEGRHCFAHLTIEENLLTGAYTRKSKAEVAANLEKVYNYFPRLKTRRTSQAAYTSGGEQQMCAIGRA LMASPSMVLLDEPSMGLAPQIVEEVFNIVKDLNQKEKVTFLLAEQNTNMALKYADYGYIMESGRVVMDGLAADLASNEDV KEFYLGVGGGERKSFKDVKSYKRRKRWLA >Mature_269_residues MDSNNIVLNVNGIEVIYNHVILVLKGVSLQVPQGRIVALLGGNGAGKTTTLRAISNLLKGERGEVTKGSIELRGERIENL STSDLVQRGVVQVMEGRHCFAHLTIEENLLTGAYTRKSKAEVAANLEKVYNYFPRLKTRRTSQAAYTSGGEQQMCAIGRA LMASPSMVLLDEPSMGLAPQIVEEVFNIVKDLNQKEKVTFLLAEQNTNMALKYADYGYIMESGRVVMDGLAADLASNEDV KEFYLGVGGGERKSFKDVKSYKRRKRWLA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=221, Percent_Identity=31.2217194570136, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI9961250, Length=223, Percent_Identity=29.5964125560538, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4505771, Length=223, Percent_Identity=29.5964125560538, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI9961252, Length=223, Percent_Identity=29.5964125560538, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI27477115, Length=213, Percent_Identity=30.0469483568075, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=23.9130434782609, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI148612844, Length=230, Percent_Identity=23.9130434782609, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI42741659, Length=211, Percent_Identity=28.436018957346, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI105990541, Length=202, Percent_Identity=28.2178217821782, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI11967971, Length=263, Percent_Identity=23.1939163498099, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI153792144, Length=207, Percent_Identity=25.6038647342995, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI46592964, Length=219, Percent_Identity=25.1141552511416, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592956, Length=219, Percent_Identity=25.1141552511416, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI46592971, Length=219, Percent_Identity=25.1141552511416, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI46592898, Length=219, Percent_Identity=25.1141552511416, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI46592915, Length=219, Percent_Identity=25.1141552511416, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI46592978, Length=219, Percent_Identity=25.1141552511416, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI150417984, Length=203, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI215820660, Length=213, Percent_Identity=26.2910798122066, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI20143975, Length=213, Percent_Identity=26.2910798122066, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI47078218, Length=228, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI45446740, Length=228, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI27436953, Length=211, Percent_Identity=25.1184834123223, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI87082268, Length=241, Percent_Identity=41.0788381742739, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=34.9775784753363, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1789864, Length=261, Percent_Identity=27.9693486590038, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=32.7659574468085, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=30.8755760368664, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789672, Length=205, Percent_Identity=31.7073170731707, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=30.7359307359307, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787370, Length=234, Percent_Identity=29.4871794871795, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1786253, Length=250, Percent_Identity=26.4, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081709, Length=217, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789593, Length=229, Percent_Identity=29.2576419213974, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790544, Length=242, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1787712, Length=207, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786398, Length=220, Percent_Identity=28.1818181818182, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788450, Length=251, Percent_Identity=27.4900398406374, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786872, Length=193, Percent_Identity=31.0880829015544, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789586, Length=237, Percent_Identity=27.0042194092827, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789032, Length=247, Percent_Identity=25.9109311740891, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787792, Length=227, Percent_Identity=26.431718061674, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=26.7782426778243, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87082267, Length=204, Percent_Identity=27.9411764705882, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI87081791, Length=206, Percent_Identity=27.6699029126214, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1788644, Length=225, Percent_Identity=28.4444444444444, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=26.6094420600858, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786319, Length=191, Percent_Identity=30.8900523560209, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786803, Length=231, Percent_Identity=23.8095238095238, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=27.6595744680851, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788506, Length=225, Percent_Identity=26.2222222222222, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=27.9620853080569, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI48995001, Length=232, Percent_Identity=26.2931034482759, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786345, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787105, Length=180, Percent_Identity=31.1111111111111, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786703, Length=202, Percent_Identity=28.7128712871287, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789873, Length=193, Percent_Identity=27.979274611399, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=26.0663507109005, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790162, Length=213, Percent_Identity=23.943661971831, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788897, Length=196, Percent_Identity=28.0612244897959, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1790739, Length=219, Percent_Identity=28.7671232876712, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788210, Length=210, Percent_Identity=24.2857142857143, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787112, Length=220, Percent_Identity=28.1818181818182, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1790190, Length=209, Percent_Identity=26.3157894736842, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788472, Length=213, Percent_Identity=27.6995305164319, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787143, Length=226, Percent_Identity=26.1061946902655, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI48994997, Length=241, Percent_Identity=26.9709543568465, Blast_Score=61, Evalue=6e-11, Organism=Escherichia coli, GI1789962, Length=227, Percent_Identity=23.3480176211454, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI71984940, Length=239, Percent_Identity=28.4518828451883, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115533608, Length=235, Percent_Identity=28.0851063829787, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71983510, Length=211, Percent_Identity=27.4881516587678, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71983516, Length=211, Percent_Identity=27.4881516587678, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71983523, Length=211, Percent_Identity=27.4881516587678, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193202349, Length=229, Percent_Identity=27.5109170305677, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI212646699, Length=162, Percent_Identity=30.8641975308642, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71996550, Length=262, Percent_Identity=29.0076335877863, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193209708, Length=220, Percent_Identity=29.5454545454545, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI25146777, Length=246, Percent_Identity=25.609756097561, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115535101, Length=212, Percent_Identity=29.7169811320755, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI193211015, Length=162, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI193211017, Length=162, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71996809, Length=162, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17567269, Length=215, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17541710, Length=228, Percent_Identity=25.4385964912281, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558664, Length=227, Percent_Identity=26.8722466960352, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17567265, Length=233, Percent_Identity=28.755364806867, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17510237, Length=267, Percent_Identity=25.0936329588015, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=184, Percent_Identity=30.9782608695652, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI24581191, Length=247, Percent_Identity=24.2914979757085, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581189, Length=247, Percent_Identity=24.2914979757085, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581193, Length=247, Percent_Identity=24.2914979757085, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581195, Length=247, Percent_Identity=24.2914979757085, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI85726357, Length=224, Percent_Identity=26.7857142857143, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI28574533, Length=216, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI281363262, Length=227, Percent_Identity=26.431718061674, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24653245, Length=227, Percent_Identity=26.431718061674, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI85816269, Length=248, Percent_Identity=24.1935483870968, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580553, Length=248, Percent_Identity=24.1935483870968, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI85724864, Length=248, Percent_Identity=24.1935483870968, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580555, Length=248, Percent_Identity=24.1935483870968, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24666092, Length=208, Percent_Identity=26.4423076923077, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 29678; Mature: 29678
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSNNIVLNVNGIEVIYNHVILVLKGVSLQVPQGRIVALLGGNGAGKTTTLRAISNLLKG CCCCCEEEEECHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCC ERGEVTKGSIELRGERIENLSTSDLVQRGVVQVMEGRHCFAHLTIEENLLTGAYTRKSKA CCCCCCCCCEEECCHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCHHCCHHCCCHHH EVAANLEKVYNYFPRLKTRRTSQAAYTSGGEQQMCAIGRALMASPSMVLLDEPSMGLAPQ HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHH IVEEVFNIVKDLNQKEKVTFLLAEQNTNMALKYADYGYIMESGRVVMDGLAADLASNEDV HHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCEEEECCCEEEHHHHHHHCCCCCH KEFYLGVGGGERKSFKDVKSYKRRKRWLA HHHHEECCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDSNNIVLNVNGIEVIYNHVILVLKGVSLQVPQGRIVALLGGNGAGKTTTLRAISNLLKG CCCCCEEEEECHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHCC ERGEVTKGSIELRGERIENLSTSDLVQRGVVQVMEGRHCFAHLTIEENLLTGAYTRKSKA CCCCCCCCCEEECCHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCHHCCHHCCCHHH EVAANLEKVYNYFPRLKTRRTSQAAYTSGGEQQMCAIGRALMASPSMVLLDEPSMGLAPQ HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHH IVEEVFNIVKDLNQKEKVTFLLAEQNTNMALKYADYGYIMESGRVVMDGLAADLASNEDV HHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCEEEECCCEEEHHHHHHHCCCCCH KEFYLGVGGGERKSFKDVKSYKRRKRWLA HHHHEECCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]