| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gsiB [H]
Identifier: 91786336
GI number: 91786336
Start: 440087
End: 441655
Strand: Reverse
Name: gsiB [H]
Synonym: Bpro_0426
Alternate gene names: 91786336
Gene position: 441655-440087 (Counterclockwise)
Preceding gene: 91786337
Following gene: 91786335
Centisome position: 8.49
GC content: 63.22
Gene sequence:
>1569_bases ATGAAACGTCGCAACCTCATTCAAATGGGTGCCGCTGCCGCCACCGGCCTGACGCTGGCCGGTGTGCCTCTGCATCTGCT GGCCGCAGGCAAGAAGGGCGGCGTGATCAACGCCGTCGTTCAACCCGAGCCTCCGGGACTGATGATGGGCATCACGCAAA ACGCCCCCACGCAGCTGATCGCCGGCAACATCTACGAAGGCCTGCTGCGCTACGACGAGAAGATCACTCCGCTGCCTTCG CTGGCGACCTCGTGGACCTCGAACAAGGAAGGCACGCTGTTCACCTTCAAGCTCAAGCCCGGCGTGCTGTGGCATGACGG CAAGCCCTTCACGTCGGCGGACGTGGTGTTCTCGGCCGCCGTGTTCCTGCGCAAGACGCACGCACGCCTGCGCGCCAACC TGGCGGCGATCGAAAGCATCAAGGCCATCGACCCGCTGACGGTCGAGTTCAAGCTCAAGTACCCGTTCGGCCCGTTCCTC GGCATCTTTGAAGTCGGCAGCATGCCGATGGTGCCCAAGCACATCTACGAAGGCACGGACTTCGCCACCAACCCGGCCAA CGCCACGCCGATCGGCACCGGCCCCTTCAAGTTCAAGGAGTGGGTCAAGGGCTCCTACATCCAGCTCGTGGCCAACGACA AGTACCACGTCAAGGACGTGCCGCTGGTCGACAGCATCTACTTCCACATCATTCCCGATGCGGCCTCGCGCGCGGCCGCC TTCGAGTCGGGCAAGGTCGACCTGGTGCCCGGCGGCGCGGTCGAATACTTCGACGTGCTTCGCCTGTCGAAACTGCCGGG TGCCGCGGTCACGACCAAGGGCTGGGAGTTCTTTGCGCCGCATGCCTGGCTGTGGATCAACAACCGCAAGGCGCCGATGG ACAACATCAAGTTCCGTCAGGCCATGATGTTCGCGATCGACCGCGAAGCCATCTGCAAGGTGGCCTGGCAAGGCTTCGCC AAGCCCGCCACCGGCCCGTTCAACAGCAACATCAAGTTCCACAGCACCGATGTCGCCAAGTACCCGCGCAACGTCGAAAC CGCCAAAAAGCTGTTGGCCGAAGCCGGCTACAAGGGCGAAACGCTGCGCATGCTGCCGCTGCCCTACGGCGAAACCTGGA CGCGCTCGGCCGAAATCCTGCGCCAGAACCTGGCCCAGGCCGGCGTGAAGATCGAGATGGTCGCGACCGACGTGGCCGGC TGGAACCAGAAACTCAACGAGTGGGACTACGACCTCGCCTTCACCTACGTCTACCAGTACGGCGACCCGGCACTCGGCGT GGCGCGCAACTACACCACGGCCAACATCGCCAAGGGCTCGCCGTTCAACAACGTCGAGGGCTATTCCAACCCGAAGATCG ACGCGCTGTTCGACGCCGGCGCGAAGGAGAGCGATCCCGAAAAGCGCAGGGCGATCTATCTGCAGGCGCAGAAAATCCTG CTGGACGAAGTGCCGGTGGCCTGGCTGTACGAAATCAACTTCCCGACGCTCTACCGCACCAAGCTCAGCAACATCGTGAG CTCGGCCATCGGCCTGAACGACAGCCTGAGCACCGCGTCCATCGCATGA
Upstream 100 bases:
>100_bases CAGCGGCTGGAGCCTGCCGCGGTCACGTCCTTTCGCGATTGATTTTTCCCTCCCACCCTGCTTCCCTCAACCTCGACAGA GCCACAAGGAGTTCGTTCTC
Downstream 100 bases:
>100_bases TGGCGTGCTCGGACCGGCGCAGCGACGGGGGCTGCAAATGAAGCGCACGCAGTTCATGCTGACCCGCGTGCTGCAGGGTC TGGTGGCGATCCTGCTGATC
Product: extracellular solute-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 522; Mature: 522
Protein sequence:
>522_residues MKRRNLIQMGAAAATGLTLAGVPLHLLAAGKKGGVINAVVQPEPPGLMMGITQNAPTQLIAGNIYEGLLRYDEKITPLPS LATSWTSNKEGTLFTFKLKPGVLWHDGKPFTSADVVFSAAVFLRKTHARLRANLAAIESIKAIDPLTVEFKLKYPFGPFL GIFEVGSMPMVPKHIYEGTDFATNPANATPIGTGPFKFKEWVKGSYIQLVANDKYHVKDVPLVDSIYFHIIPDAASRAAA FESGKVDLVPGGAVEYFDVLRLSKLPGAAVTTKGWEFFAPHAWLWINNRKAPMDNIKFRQAMMFAIDREAICKVAWQGFA KPATGPFNSNIKFHSTDVAKYPRNVETAKKLLAEAGYKGETLRMLPLPYGETWTRSAEILRQNLAQAGVKIEMVATDVAG WNQKLNEWDYDLAFTYVYQYGDPALGVARNYTTANIAKGSPFNNVEGYSNPKIDALFDAGAKESDPEKRRAIYLQAQKIL LDEVPVAWLYEINFPTLYRTKLSNIVSSAIGLNDSLSTASIA
Sequences:
>Translated_522_residues MKRRNLIQMGAAAATGLTLAGVPLHLLAAGKKGGVINAVVQPEPPGLMMGITQNAPTQLIAGNIYEGLLRYDEKITPLPS LATSWTSNKEGTLFTFKLKPGVLWHDGKPFTSADVVFSAAVFLRKTHARLRANLAAIESIKAIDPLTVEFKLKYPFGPFL GIFEVGSMPMVPKHIYEGTDFATNPANATPIGTGPFKFKEWVKGSYIQLVANDKYHVKDVPLVDSIYFHIIPDAASRAAA FESGKVDLVPGGAVEYFDVLRLSKLPGAAVTTKGWEFFAPHAWLWINNRKAPMDNIKFRQAMMFAIDREAICKVAWQGFA KPATGPFNSNIKFHSTDVAKYPRNVETAKKLLAEAGYKGETLRMLPLPYGETWTRSAEILRQNLAQAGVKIEMVATDVAG WNQKLNEWDYDLAFTYVYQYGDPALGVARNYTTANIAKGSPFNNVEGYSNPKIDALFDAGAKESDPEKRRAIYLQAQKIL LDEVPVAWLYEINFPTLYRTKLSNIVSSAIGLNDSLSTASIA >Mature_522_residues MKRRNLIQMGAAAATGLTLAGVPLHLLAAGKKGGVINAVVQPEPPGLMMGITQNAPTQLIAGNIYEGLLRYDEKITPLPS LATSWTSNKEGTLFTFKLKPGVLWHDGKPFTSADVVFSAAVFLRKTHARLRANLAAIESIKAIDPLTVEFKLKYPFGPFL GIFEVGSMPMVPKHIYEGTDFATNPANATPIGTGPFKFKEWVKGSYIQLVANDKYHVKDVPLVDSIYFHIIPDAASRAAA FESGKVDLVPGGAVEYFDVLRLSKLPGAAVTTKGWEFFAPHAWLWINNRKAPMDNIKFRQAMMFAIDREAICKVAWQGFA KPATGPFNSNIKFHSTDVAKYPRNVETAKKLLAEAGYKGETLRMLPLPYGETWTRSAEILRQNLAQAGVKIEMVATDVAG WNQKLNEWDYDLAFTYVYQYGDPALGVARNYTTANIAKGSPFNNVEGYSNPKIDALFDAGAKESDPEKRRAIYLQAQKIL LDEVPVAWLYEINFPTLYRTKLSNIVSSAIGLNDSLSTASIA
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1789966, Length=523, Percent_Identity=26.0038240917782, Blast_Score=149, Evalue=5e-37, Organism=Escherichia coli, GI1787052, Length=458, Percent_Identity=26.6375545851528, Blast_Score=142, Evalue=7e-35, Organism=Escherichia coli, GI1787762, Length=506, Percent_Identity=24.901185770751, Blast_Score=122, Evalue=7e-29, Organism=Escherichia coli, GI1789887, Length=476, Percent_Identity=25.2100840336134, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI1787495, Length=520, Percent_Identity=25.5769230769231, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI87081878, Length=537, Percent_Identity=23.0912476722533, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1789397, Length=524, Percent_Identity=24.0458015267176, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1787551, Length=487, Percent_Identity=22.9979466119097, Blast_Score=89, Evalue=6e-19,
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 57416; Mature: 57416
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRNLIQMGAAAATGLTLAGVPLHLLAAGKKGGVINAVVQPEPPGLMMGITQNAPTQLI CCCCCHHHHCCHHHCCEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCEE AGNIYEGLLRYDEKITPLPSLATSWTSNKEGTLFTFKLKPGVLWHDGKPFTSADVVFSAA ECHHHHHHHHHCCCCCCCCCHHHCCCCCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHH VFLRKTHARLRANLAAIESIKAIDPLTVEFKLKYPFGPFLGIFEVGSMPMVPKHIYEGTD HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHCCCCCCCHHHHHCCCC FATNPANATPIGTGPFKFKEWVKGSYIQLVANDKYHVKDVPLVDSIYFHIIPDAASRAAA CCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCEEEECCCHHHCEEEEEECCHHHHHHH FESGKVDLVPGGAVEYFDVLRLSKLPGAAVTTKGWEFFAPHAWLWINNRKAPMDNIKFRQ HCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCEEECCEEEEEECCCCCCCHHHHHHH AMMFAIDREAICKVAWQGFAKPATGPFNSNIKFHSTDVAKYPRNVETAKKLLAEAGYKGE HHHHHHCHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHCCCCHHHHHHHHHHCCCCCC TLRMLPLPYGETWTRSAEILRQNLAQAGVKIEMVATDVAGWNQKLNEWDYDLAFTYVYQY EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCCCCCEEEEEEEEC GDPALGVARNYTTANIAKGSPFNNVEGYSNPKIDALFDAGAKESDPEKRRAIYLQAQKIL CCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHEEEEEHHHHH LDEVPVAWLYEINFPTLYRTKLSNIVSSAIGLNDSLSTASIA HHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKRRNLIQMGAAAATGLTLAGVPLHLLAAGKKGGVINAVVQPEPPGLMMGITQNAPTQLI CCCCCHHHHCCHHHCCEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCEE AGNIYEGLLRYDEKITPLPSLATSWTSNKEGTLFTFKLKPGVLWHDGKPFTSADVVFSAA ECHHHHHHHHHCCCCCCCCCHHHCCCCCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHH VFLRKTHARLRANLAAIESIKAIDPLTVEFKLKYPFGPFLGIFEVGSMPMVPKHIYEGTD HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHCCCCCCCHHHHHCCCC FATNPANATPIGTGPFKFKEWVKGSYIQLVANDKYHVKDVPLVDSIYFHIIPDAASRAAA CCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCEEEECCCHHHCEEEEEECCHHHHHHH FESGKVDLVPGGAVEYFDVLRLSKLPGAAVTTKGWEFFAPHAWLWINNRKAPMDNIKFRQ HCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCEEECCEEEEEECCCCCCCHHHHHHH AMMFAIDREAICKVAWQGFAKPATGPFNSNIKFHSTDVAKYPRNVETAKKLLAEAGYKGE HHHHHHCHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHCCCCHHHHHHHHHHCCCCCC TLRMLPLPYGETWTRSAEILRQNLAQAGVKIEMVATDVAGWNQKLNEWDYDLAFTYVYQY EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCCCCCEEEEEEEEC GDPALGVARNYTTANIAKGSPFNNVEGYSNPKIDALFDAGAKESDPEKRRAIYLQAQKIL CCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHEEEEEHHHHH LDEVPVAWLYEINFPTLYRTKLSNIVSSAIGLNDSLSTASIA HHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA