| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786337
Identifier: 91786337
GI number: 91786337
Start: 441714
End: 442505
Strand: Reverse
Name: 91786337
Synonym: Bpro_0427
Alternate gene names: NA
Gene position: 442505-441714 (Counterclockwise)
Preceding gene: 91786338
Following gene: 91786336
Centisome position: 8.51
GC content: 68.18
Gene sequence:
>792_bases ATGCCGTTGCACGCAGTGGGTCACAAGGCCACACCCATGTCCGACGCCGAGCGCCGGGTACGCGAGGATCTGGCCGCCGC CTACCGGCTGGTGGCGCTCCATGGCATGGACGACAGCATCTACACGCATATTTCCGCGCGTGTCCCCGGCGCCCATGACC AGTTCCTGATCAACCCCTTCGGGATGCTGTTCCGCGACATCACCGCGTCGTCGCTGGTCAAGATCGACCTCGAGGGACGC ATCCTGGACGAGTCACCCTACGACGTGAATCCTGCCGGCTTCACCATCCACAGCGCCGTGCACGCGGCGCGCCACGATGC CGCGTGCGTGCTGCACACCCACACGGTGGCGGGCGTGGCGGTGTCATCGCTCGCCGGCGGGCTGCAGCCCTGCAACCAGT GGTCGCTGCAGTTCTACAAGCGCGTCGTCTACCACGACTTCGAAGGCATCGCGCTCGACGCAGACGAGCGCGAGCGCCTG GTCGCCGACCTGGGCCCGACGGCGCGTGCGCTCATCCTGCGCAACCACGGTCTGGTGACGCTGGGGCGCACCATCGCGGA GGCCTTCATCCTGATGCTCAACCTGGAGCGCGCCTGCCGGGTGCAGGTGGCGATCCAGTCCAGCGGCTCGCCGGTGTATC CCGTCCCGCACGAGGTCTGCGAAAAAACAGCACGGCAGTACGAGAGCGGCGACAGCAACCGCCTGCCCGGCCTGCCGGAT CCGGACGCGCGCGAATGGCGCGCGCTGCTGCAGCGGCTGGAGCCTGCCGCGGTCACGTCCTTTCGCGATTGA
Upstream 100 bases:
>100_bases AATCCGTTATATGTTGACTGTCGACAGTATTCCAACCAGAATCGCCCAAAACAGCACCGGCGCGCTCAAGCCGCGCCTTA CTTACAGAGGGAAACAAGAT
Downstream 100 bases:
>100_bases TTTTTCCCTCCCACCCTGCTTCCCTCAACCTCGACAGAGCCACAAGGAGTTCGTTCTCATGAAACGTCGCAACCTCATTC AAATGGGTGCCGCTGCCGCC
Product: class II aldolase/adducin-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MPLHAVGHKATPMSDAERRVREDLAAAYRLVALHGMDDSIYTHISARVPGAHDQFLINPFGMLFRDITASSLVKIDLEGR ILDESPYDVNPAGFTIHSAVHAARHDAACVLHTHTVAGVAVSSLAGGLQPCNQWSLQFYKRVVYHDFEGIALDADERERL VADLGPTARALILRNHGLVTLGRTIAEAFILMLNLERACRVQVAIQSSGSPVYPVPHEVCEKTARQYESGDSNRLPGLPD PDAREWRALLQRLEPAAVTSFRD
Sequences:
>Translated_263_residues MPLHAVGHKATPMSDAERRVREDLAAAYRLVALHGMDDSIYTHISARVPGAHDQFLINPFGMLFRDITASSLVKIDLEGR ILDESPYDVNPAGFTIHSAVHAARHDAACVLHTHTVAGVAVSSLAGGLQPCNQWSLQFYKRVVYHDFEGIALDADERERL VADLGPTARALILRNHGLVTLGRTIAEAFILMLNLERACRVQVAIQSSGSPVYPVPHEVCEKTARQYESGDSNRLPGLPD PDAREWRALLQRLEPAAVTSFRD >Mature_262_residues PLHAVGHKATPMSDAERRVREDLAAAYRLVALHGMDDSIYTHISARVPGAHDQFLINPFGMLFRDITASSLVKIDLEGRI LDESPYDVNPAGFTIHSAVHAARHDAACVLHTHTVAGVAVSSLAGGLQPCNQWSLQFYKRVVYHDFEGIALDADERERLV ADLGPTARALILRNHGLVTLGRTIAEAFILMLNLERACRVQVAIQSSGSPVYPVPHEVCEKTARQYESGDSNRLPGLPDP DAREWRALLQRLEPAAVTSFRD
Specific function: Unknown
COG id: COG0235
COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldolase class II family [H]
Homologues:
Organism=Homo sapiens, GI29826325, Length=208, Percent_Identity=46.1538461538462, Blast_Score=183, Evalue=1e-46, Organism=Homo sapiens, GI29826323, Length=208, Percent_Identity=46.1538461538462, Blast_Score=183, Evalue=1e-46, Organism=Homo sapiens, GI29826321, Length=199, Percent_Identity=47.7386934673367, Blast_Score=183, Evalue=1e-46, Organism=Homo sapiens, GI29826319, Length=199, Percent_Identity=47.7386934673367, Blast_Score=183, Evalue=2e-46, Organism=Homo sapiens, GI9943848, Length=190, Percent_Identity=40, Blast_Score=148, Evalue=5e-36, Organism=Homo sapiens, GI9951927, Length=190, Percent_Identity=40, Blast_Score=148, Evalue=5e-36, Organism=Homo sapiens, GI62912453, Length=190, Percent_Identity=40, Blast_Score=148, Evalue=5e-36, Organism=Homo sapiens, GI9257190, Length=218, Percent_Identity=37.6146788990826, Blast_Score=147, Evalue=7e-36, Organism=Homo sapiens, GI297307160, Length=218, Percent_Identity=37.6146788990826, Blast_Score=147, Evalue=8e-36, Organism=Homo sapiens, GI89276787, Length=218, Percent_Identity=37.6146788990826, Blast_Score=147, Evalue=9e-36, Organism=Homo sapiens, GI297307158, Length=218, Percent_Identity=37.6146788990826, Blast_Score=147, Evalue=9e-36, Organism=Homo sapiens, GI9257192, Length=218, Percent_Identity=37.6146788990826, Blast_Score=147, Evalue=9e-36, Organism=Caenorhabditis elegans, GI115533216, Length=192, Percent_Identity=42.1875, Blast_Score=145, Evalue=2e-35, Organism=Caenorhabditis elegans, GI115533218, Length=253, Percent_Identity=37.1541501976285, Blast_Score=145, Evalue=2e-35, Organism=Caenorhabditis elegans, GI71989560, Length=249, Percent_Identity=34.9397590361446, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71989550, Length=249, Percent_Identity=34.9397590361446, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71989544, Length=249, Percent_Identity=34.9397590361446, Blast_Score=125, Evalue=1e-29, Organism=Caenorhabditis elegans, GI71989555, Length=249, Percent_Identity=34.9397590361446, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI71989541, Length=249, Percent_Identity=34.9397590361446, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI281363755, Length=212, Percent_Identity=34.4339622641509, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI281363751, Length=212, Percent_Identity=34.4339622641509, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI24655690, Length=212, Percent_Identity=34.4339622641509, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI24655685, Length=208, Percent_Identity=34.6153846153846, Blast_Score=136, Evalue=2e-32, Organism=Drosophila melanogaster, GI281363763, Length=201, Percent_Identity=35.3233830845771, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI281363757, Length=201, Percent_Identity=35.3233830845771, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI17136738, Length=201, Percent_Identity=35.3233830845771, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI281363761, Length=208, Percent_Identity=34.6153846153846, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI281363759, Length=208, Percent_Identity=34.6153846153846, Blast_Score=135, Evalue=2e-32, Organism=Drosophila melanogaster, GI281363753, Length=208, Percent_Identity=34.6153846153846, Blast_Score=135, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001303 [H]
Pfam domain/function: PF00596 Aldolase_II [H]
EC number: NA
Molecular weight: Translated: 28928; Mature: 28797
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLHAVGHKATPMSDAERRVREDLAAAYRLVALHGMDDSIYTHISARVPGAHDQFLINPF CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCEEECHH GMLFRDITASSLVKIDLEGRILDESPYDVNPAGFTIHSAVHAARHDAACVLHTHTVAGVA HHHHHHHCHHHEEEEEECCEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHH VSSLAGGLQPCNQWSLQFYKRVVYHDFEGIALDADERERLVADLGPTARALILRNHGLVT HHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCEEEEEECCCCEE LGRTIAEAFILMLNLERACRVQVAIQSSGSPVYPVPHEVCEKTARQYESGDSNRLPGLPD HHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC PDAREWRALLQRLEPAAVTSFRD CCHHHHHHHHHHCCCHHHCCCCC >Mature Secondary Structure PLHAVGHKATPMSDAERRVREDLAAAYRLVALHGMDDSIYTHISARVPGAHDQFLINPF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCEEECHH GMLFRDITASSLVKIDLEGRILDESPYDVNPAGFTIHSAVHAARHDAACVLHTHTVAGVA HHHHHHHCHHHEEEEEECCEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHH VSSLAGGLQPCNQWSLQFYKRVVYHDFEGIALDADERERLVADLGPTARALILRNHGLVT HHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCEEEEEECCCCEE LGRTIAEAFILMLNLERACRVQVAIQSSGSPVYPVPHEVCEKTARQYESGDSNRLPGLPD HHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC PDAREWRALLQRLEPAAVTSFRD CCHHHHHHHHHHCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]